jgi.p|Nanoce1779_2|226534, mRNA_8950 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|226534
Unique NamemRNA_8950
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length569
Alignment locationscaffold_29:297062..297630 -

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Properties
Property NameValue
TranscriptId226620
TrackFilteredModels2
ProteinId226534
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_29supercontigscaffold_29:297062..297630 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|226534gene_8950Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|226534mRNA_8950-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_8950CDS_8950Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_8950 ID=mRNA_8950|Name=jgi.p|Nanoce1779_2|226534|organism=Nannochloropsis oceanica|type=mRNA|length=569bp
GAGGGAGGGAGGGAGGGAGGGAGGGAGGCAGGGAGGGAGACAGGGAGGAT
GGAACGTCGGAATCGGCTTTATGCCAGCATGGCCCGGCTTTCGTTTCACA
TGGCATGACTTTTATTCCTCCTTCGCTCTTTCGCTCGCTCCCTCCCTCCC
TCTCTTTCAGGTGGCCTGCGAAGCGGCAGACTTGGTCCTTCTCCACAACT
CCCTCTCTGACGTGGTCACGGCCTTGCACCTCGCCCGCACTGTCTTTCGC
CGCATTCAACTTAACATGCTTTGGGCTTTGGGATATAACGTGATTGGGAT
TCCTTTGGCGGCCGGCGCGTTTCTCCCGTTGGTAGGATGGAGGCTTCCCC
CCGGCTACTCAGGTAGGAAACGAGGAAGGGAGGGAGGGAGGGAGCGAAGG
AGGGAGGGAGGACCTCGCGCATCCTGCTCCACATGCGCCTGTGGTGCTTA
GGATTTGTTCTTAATGCTTCTCCCATTGGTCTTCCAGTCGGACTTTCGCT
TCCTTCATCTCACCTTCCCATCCCTTCCCCCCTCCATTCTTCCCTCTCTC
CCTAGGCCTGGCAATGATC
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protein sequence of jgi.p|Nanoce1779_2|226534

>mRNA_8950-protein ID=mRNA_8950-protein|Name=jgi.p|Nanoce1779_2|226534|organism=Nannochloropsis oceanica|type=polypeptide|length=127bp
MPAWPGFRFTWHDFYSSFALSLAPSLPLFQVACEAADLVLLHNSLSDVVT
ALHLARTVFRRIQLNMLWALGYNVIGIPLAAGAFLPLVGWRLPPGYSGRK
RGREGGRERRREGGPRASCSTCACGA*
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mRNA from alignment at scaffold_29:297062..297630-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_8950 ID=mRNA_8950|Name=jgi.p|Nanoce1779_2|226534|organism=Nannochloropsis oceanica|type=mRNA|length=569bp|location=Sequence derived from alignment at scaffold_29:297062..297630- (Nannochloropsis oceanica)
GAGGGAGGGAGGGAGGGAGGGAGGGAGGCAGGGAGGGAGACAGGGAGGAT
GGAACGTCGGAATCGGCTTTATGCCAGCATGGCCCGGCTTTCGTTTCACA
TGGCATGACTTTTATTCCTCCTTCGCTCTTTCGCTCGCTCCCTCCCTCCC
TCTCTTTCAGGTGGCCTGCGAAGCGGCAGACTTGGTCCTTCTCCACAACT
CCCTCTCTGACGTGGTCACGGCCTTGCACCTCGCCCGCACTGTCTTTCGC
CGCATTCAACTTAACATGCTTTGGGCTTTGGGATATAACGTGATTGGGAT
TCCTTTGGCGGCCGGCGCGTTTCTCCCGTTGGTAGGATGGAGGCTTCCCC
CCGGCTACTCAGGTAGGAAACGAGGAAGGGAGGGAGGGAGGGAGCGAAGG
AGGGAGGGAGGACCTCGCGCATCCTGCTCCACATGCGCCTGTGGTGCTTA
GGATTTGTTCTTAATGCTTCTCCCATTGGTCTTCCAGTCGGACTTTCGCT
TCCTTCATCTCACCTTCCCATCCCTTCCCCCCTCCATTCTTCCCTCTCTC
CCTAGGCCTGGCAATGATC
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Coding sequence (CDS) from alignment at scaffold_29:297062..297630-

>mRNA_8950 ID=mRNA_8950|Name=jgi.p|Nanoce1779_2|226534|organism=Nannochloropsis oceanica|type=CDS|length=381bp|location=Sequence derived from alignment at scaffold_29:297062..297630- (Nannochloropsis oceanica)
ATGCCAGCATGGCCCGGCTTTCGTTTCACATGGCATGACTTTTATTCCTC
CTTCGCTCTTTCGCTCGCTCCCTCCCTCCCTCTCTTTCAGGTGGCCTGCG
AAGCGGCAGACTTGGTCCTTCTCCACAACTCCCTCTCTGACGTGGTCACG
GCCTTGCACCTCGCCCGCACTGTCTTTCGCCGCATTCAACTTAACATGCT
TTGGGCTTTGGGATATAACGTGATTGGGATTCCTTTGGCGGCCGGCGCGT
TTCTCCCGTTGGTAGGATGGAGGCTTCCCCCCGGCTACTCAGGTAGGAAA
CGAGGAAGGGAGGGAGGGAGGGAGCGAAGGAGGGAGGGAGGACCTCGCGC
ATCCTGCTCCACATGCGCCTGTGGTGCTTAG
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Synonyms
Publications