jgi.p|Nanoce1779_2|576124, mRNA_72 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|576124
Unique NamemRNA_72
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length467
Alignment locationscaffold_3:196233..196699 -

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Properties
Property NameValue
TranscriptId576210
TrackFilteredModels2
ProteinId576124
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:196233..196699 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|576124gene_72Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|576124mRNA_72-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_72CDS_72Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_72 ID=mRNA_72|Name=jgi.p|Nanoce1779_2|576124|organism=Nannochloropsis oceanica|type=mRNA|length=467bp
TGGATATGGGTACCAAAATCGAAGCTCGATACAAGGGCCGTGATCGTTGG
TTTACAGGCATCGTCGCGCGGACCCACCAAAACGAGCACACTTATGACAT
TCACTACGACGATGGTGATGAGGAAACACATGTCCCCCAAGAAATGGTCC
GTCCTCGCGGCGCCAGTACAGCTTTGCAATTGCAACGTCCCTCTTCCGTC
GAGTCCTCGTCTTCCGTCAGCTCCGTCTTATCGCTGGTATTTCAAAAAGG
TGACCGCGTCGAGGCCCGATACCAGGGCCGAGGGACATTCTATTCAGGTG
TGATTGCGGCCGTGCATGCCTCCGATGGATCTTATGAAATTCATTACGAC
GACGGCGATGTCGAAAACCGGGTAGTGGCCGCCATGGTCCGCCCCGTGGG
AGGAAAGAGTTAGGTCTTTGAAAGGGGAAAGTTAGTGAGTAAAGTGAGTC
ATAAAAAAGAAATATCG
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protein sequence of jgi.p|Nanoce1779_2|576124

>mRNA_72-protein ID=mRNA_72-protein|Name=jgi.p|Nanoce1779_2|576124|organism=Nannochloropsis oceanica|type=polypeptide|length=136bp
MGTKIEARYKGRDRWFTGIVARTHQNEHTYDIHYDDGDEETHVPQEMVRP
RGASTALQLQRPSSVESSSSVSSVLSLVFQKGDRVEARYQGRGTFYSGVI
AAVHASDGSYEIHYDDGDVENRVVAAMVRPVGGKS*
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mRNA from alignment at scaffold_3:196233..196699-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_72 ID=mRNA_72|Name=jgi.p|Nanoce1779_2|576124|organism=Nannochloropsis oceanica|type=mRNA|length=467bp|location=Sequence derived from alignment at scaffold_3:196233..196699- (Nannochloropsis oceanica)
TGGATATGGGTACCAAAATCGAAGCTCGATACAAGGGCCGTGATCGTTGG
TTTACAGGCATCGTCGCGCGGACCCACCAAAACGAGCACACTTATGACAT
TCACTACGACGATGGTGATGAGGAAACACATGTCCCCCAAGAAATGGTCC
GTCCTCGCGGCGCCAGTACAGCTTTGCAATTGCAACGTCCCTCTTCCGTC
GAGTCCTCGTCTTCCGTCAGCTCCGTCTTATCGCTGGTATTTCAAAAAGG
TGACCGCGTCGAGGCCCGATACCAGGGCCGAGGGACATTCTATTCAGGTG
TGATTGCGGCCGTGCATGCCTCCGATGGATCTTATGAAATTCATTACGAC
GACGGCGATGTCGAAAACCGGGTAGTGGCCGCCATGGTCCGCCCCGTGGG
AGGAAAGAGTTAGGTCTTTGAAAGGGGAAAGTTAGTGAGTAAAGTGAGTC
ATAAAAAAGAAATATCG
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Coding sequence (CDS) from alignment at scaffold_3:196233..196699-

>mRNA_72 ID=mRNA_72|Name=jgi.p|Nanoce1779_2|576124|organism=Nannochloropsis oceanica|type=CDS|length=408bp|location=Sequence derived from alignment at scaffold_3:196233..196699- (Nannochloropsis oceanica)
ATGGGTACCAAAATCGAAGCTCGATACAAGGGCCGTGATCGTTGGTTTAC
AGGCATCGTCGCGCGGACCCACCAAAACGAGCACACTTATGACATTCACT
ACGACGATGGTGATGAGGAAACACATGTCCCCCAAGAAATGGTCCGTCCT
CGCGGCGCCAGTACAGCTTTGCAATTGCAACGTCCCTCTTCCGTCGAGTC
CTCGTCTTCCGTCAGCTCCGTCTTATCGCTGGTATTTCAAAAAGGTGACC
GCGTCGAGGCCCGATACCAGGGCCGAGGGACATTCTATTCAGGTGTGATT
GCGGCCGTGCATGCCTCCGATGGATCTTATGAAATTCATTACGACGACGG
CGATGTCGAAAACCGGGTAGTGGCCGCCATGGTCCGCCCCGTGGGAGGAA
AGAGTTAG
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Synonyms
Publications