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Properties
Property Name | Value |
TranscriptId | 250174 |
Track | FilteredModels2 |
ProteinId | 250088 |
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_30 | supercontig | scaffold_30:224594..227339 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_9021 ID=mRNA_9021|Name=jgi.p|Nanoce1779_2|250088|organism=Nannochloropsis oceanica|type=mRNA|length=2595bp AAATTTTACGCGACTGATCACACACTCCACCCATCACAGGCGGCATCACA ACCCCAGCTATCCTAAACACTCAACCCTACAACCCTGCGCAGTCCGTGTG TTTCTCCTTCCCCTGCCGTCCCTTCTCCTTCCCATAGCCAGCTGCTAACT TAGTGTCATGATGGAGGGGACGGGCGCGTACTCCACCGTCCTCCCCACCG TTACCACCGGCGGCAGCAACGAAGAACATTTCAATCTTCTCCTCCAAATC CAGCAGCTCCAGGATAAATGCACGTACCTTGCGGGGGGCACCAATGGAGT GCAACTCACCGAAATCCTGATCGAAAAAGAGGAGGAATGCCGAGACAAGG ATCGGGCCATGTCATCACTCGAAGAGGAAATGAATCGTTTAAAGGAGGTC CTCATGCGGATGGAGCAGGAAAAGGCGGCACTACAGGGGCTGGTGCACGA GCAAGGGGTATCTATCACGGGTCTAACGAAGCAGATGCAAACGCTATCGG CAGAGCGAGAGGAGCTCCAACAGCGCCTTGATGCCACGCATGCCGAGCTT ACCACCACCCAAGCCTCCCTTTATGCCATTCAAATAAAGGCAGACACTTC GCATTCGGCCTGGATGAGGAGCGAGGAACAACTGGCTATGGCGCGGGAGA CGGAAAAGGCTCTGGAAATGGCAATGGAGAGGATGCGGGAGGAGGAGAAG GAGAGAGAGAGCCGGAGGGATGAAGAGGTTGGAGCAGAGAGGAGGGAGAA GGAGGAGATGGAGCGGCTGCTGCAGGCGAGTCGGAAAGAAATGAGAGATT TAAAAATGAGGTTGGAAGAGAATTTAGAGAGGGAGCAGGACATTGCACAA GCGAGGCGAAAGGCGGAGGAAGCAGTGACAGGCCTCCGGATAGAAAACGA GGCATGTCGGAAGAAGGTCTTGTTGTTTCAAAAAGAACACCAAGAAATCA GCTTGAGGCTCAGCAATGCACGCCACGAGAAGGAGGCACAATGGCGTCAA ACACGAGAGGAGAACGAGGGAAGCATGAGAAAAATCCGCGAGGAAAAAGA GGAATGCAGGCGGAAAGTGGATGAGTTGAAGAGGGAGCTCAAGGTGGTGG TGGGTGTGAGTGTGTGCAACGCCGACAAGGTGAAAGAGCTAGAGGGCGAG ATAGAAAGGATGGGCTGGGAGAAGGAGAGGGTGGAGTTGGAGAGAAAGCG GGAGATGGAGCGGTGGGAGGAGGAGGAGAGGAGGAGGAGGGAGCAGGGGG AGGAGGAGGGGAGGGAGAGGGATAGGAGGTTGGAATGGTATCGGAAGAGG GTGATTGAGATGGAGGGGAGGGAGGAGGAGATGGAGAGGGAGAGAAAGGA ATCTATGGAGGAAGTACGAGAATTGAGAAAGGGGGGCATGAGGGAGGGCG AGGATGTGAGGGCGGAGTTGGTACGAATAAAAGGAGAAAATGAGATTCTG AGGGAAAGGGTAGCAAGGCAAGATGCTTATTTAAGGAGGAGAGTACTGAA GGAGGGAGGAGGGAGGGAGAGAGTTAGAGGGGGGGGAAGGGCCACTATGG ATCATATGACCAGCTTGTTGCTCAGCTCGTCGGCGGAAGTGGAGAGGGAG GGAAGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGATTCGTCGTACATGCT GGACCAGCAGGACTTCAGACTGCAGCAGCGGCTCTTGCAACAGCACTGTT TTGTGGACCCGGACGGCCATAGAACTCCTGCAGTTCCTTCTGCTGTTGCT GCTACTGCGACTGCTGTTGGTGTGGGTGGGATGAGGATCAGGAAGGAGGT GGAAGATAAACAGCACCGGCATTACCAGCACGAGCAGCAGTACGAGGAGC AGGAGGAGTTGGAGAATGATTTCTCACGGCTTTTGTCGCACTATCGAGAG AGGGGAGGAAGGTTAGATAATGGTTATGATGATGAGGAGGAAGACGACAA GAAGTACGAAGGTCGGAATGAGTCTTCTTTTCCGCGGACGTTTCCCCATG GGCATAAGCCTTCGAAGGTAACACAGCAGCTGCAGCAGCAGCATGCGAGG AACGGCCGCACTAGCAGGTGGAGGGATGGCCAAGGCGATGCACACGGTGC TATAAACGGTAATATTGCTGCTGGCCTATCTTCTCTCCCGCCGCGGACCT CCGTTTCTACTGCCTCCCCTCCCTCCTTCCCTTCCTCCCGCCATACCAGC ATTCCTCGCCACGGGCCCTCTCCGGCGCGGCTTAAGCTTTTAAGGAGAGA GGGAGGAGGAGACAAAGGAATTTGGGGTCCCTCCCCACGATGGTGACCCA GTGATGTGTGTGGGGCTTGTAAATTGGATGTTGTAGGTTGTGGGAAAAGA AGCTGAGGCATCGAAGGAACTGTGCGTGAACGGGTAGTACTTTTTGCAGT CCTAAACAAAGAAGCATGGAGCACAGAGCACACAGACAGACGGTCGATAG ATGGAGTCGAAGGAATAAAGTACAAACCAACCGTGAAGCGAAACAGACGA CCTATGCATGTAAGCACTACCGAGCGGCATAGTGCTTTTGGTTCCAGGCA CATACGTCCGTTGGAGGGGCAAGGCAATTAATTAACTTACTTTCA back to topprotein sequence of jgi.p|Nanoce1779_2|250088 >mRNA_9021-protein ID=mRNA_9021-protein|Name=jgi.p|Nanoce1779_2|250088|organism=Nannochloropsis oceanica|type=polypeptide|length=713bp MMEGTGAYSTVLPTVTTGGSNEEHFNLLLQIQQLQDKCTYLAGGTNGVQL TEILIEKEEECRDKDRAMSSLEEEMNRLKEVLMRMEQEKAALQGLVHEQG VSITGLTKQMQTLSAEREELQQRLDATHAELTTTQASLYAIQIKADTSHS AWMRSEEQLAMARETEKALEMAMERMREEEKERESRRDEEVGAERREKEE MERLLQASRKEMRDLKMRLEENLEREQDIAQARRKAEEAVTGLRIENEAC RKKVLLFQKEHQEISLRLSNARHEKEAQWRQTREENEGSMRKIREEKEEC RRKVDELKRELKVVVGVSVCNADKVKELEGEIERMGWEKERVELERKREM ERWEEEERRRREQGEEEGRERDRRLEWYRKRVIEMEGREEEMERERKESM EEVRELRKGGMREGEDVRAELVRIKGENEILRERVARQDAYLRRRVLKEG GGRERVRGGGRATMDHMTSLLLSSSAEVEREGRREGGREGGRDSSYMLDQ QDFRLQQRLLQQHCFVDPDGHRTPAVPSAVAATATAVGVGGMRIRKEVED KQHRHYQHEQQYEEQEELENDFSRLLSHYRERGGRLDNGYDDEEEDDKKY EGRNESSFPRTFPHGHKPSKVTQQLQQQHARNGRTSRWRDGQGDAHGAIN GNIAAGLSSLPPRTSVSTASPPSFPSSRHTSIPRHGPSPARLKLLRREGG GDKGIWGPSPRW* back to topmRNA from alignment at scaffold_30:224594..227339- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_9021 ID=mRNA_9021|Name=jgi.p|Nanoce1779_2|250088|organism=Nannochloropsis oceanica|type=mRNA|length=2746bp|location=Sequence derived from alignment at scaffold_30:224594..227339- (Nannochloropsis oceanica) AAATTTTACGCGACTGATCACACACTCCACCCATCACAGGCGGCATCACA
ACCCCAGCTATCCTAAACACTCAACCCTACAACCCTGCGCAGTCCGTGTG
TTTCTCCTTCCCCTGCCGTCCCTTCTCCTTCCCATAGCCAGCTGCTAACT
TAGTGTCATGATGGAGGGGACGGGCGCGTACTCCACCGTCCTCCCCACCG
TTACCACCGGCGGCAGCAACGAAGAACATTTCAATCTTCTCCTCCAAATC
CAGCAGCTCCAGGATAAATGCACGTACCTTGCGGGGGGCACCAATGGAGT
GCAACTCACCGAAATCCTGATCGAAAAAGAGGAGGAATGCCGAGACAAGG
ATCGGGCCATGTCATCACTCGAAGAGGAAATGAATCGTTTAAAGGAGGTC
CTCATGCGGATGGAGCAGGAAAAGGCGGCACTACAGGGGCTGGTGCACGA
GCAAGGGGTATCTATCACGGGTCTAACGAAGCAGGTAAGGCGGCATGTTC
GGGCTTAATGATGCCTCTTCCGAAGCACTCTTCCCTTCGTTTGTCCCCCT
CTTTTCCCTCCTACCTCGGCCTGTGCCAAAGCTTGTCCAAATAATCTGGC
TAAGTATTCCCCCTTCCTCCTTCTACCGTCCCTAGATGCAAACGCTATCG
GCAGAGCGAGAGGAGCTCCAACAGCGCCTTGATGCCACGCATGCCGAGCT
TACCACCACCCAAGCCTCCCTTTATGCCATTCAAATAAAGGCAGACACTT
CGCATTCGGCCTGGATGAGGAGCGAGGAACAACTGGCTATGGCGCGGGAG
ACGGAAAAGGCTCTGGAAATGGCAATGGAGAGGATGCGGGAGGAGGAGAA
GGAGAGAGAGAGCCGGAGGGATGAAGAGGTTGGAGCAGAGAGGAGGGAGA
AGGAGGAGATGGAGCGGCTGCTGCAGGCGAGTCGGAAAGAAATGAGAGAT
TTAAAAATGAGGTTGGAAGAGAATTTAGAGAGGGAGCAGGACATTGCACA
AGCGAGGCGAAAGGCGGAGGAAGCAGTGACAGGCCTCCGGATAGAAAACG
AGGCATGTCGGAAGAAGGTCTTGTTGTTTCAAAAAGAACACCAAGAAATC
AGCTTGAGGCTCAGCAATGCACGCCACGAGAAGGAGGCACAATGGCGTCA
AACACGAGAGGAGAACGAGGGAAGCATGAGAAAAATCCGCGAGGAAAAAG
AGGAATGCAGGCGGAAAGTGGATGAGTTGAAGAGGGAGCTCAAGGTGGTG
GTGGGTGTGAGTGTGTGCAACGCCGACAAGGTGAAAGAGCTAGAGGGCGA
GATAGAAAGGATGGGCTGGGAGAAGGAGAGGGTGGAGTTGGAGAGAAAGC
GGGAGATGGAGCGGTGGGAGGAGGAGGAGAGGAGGAGGAGGGAGCAGGGG
GAGGAGGAGGGGAGGGAGAGGGATAGGAGGTTGGAATGGTATCGGAAGAG
GGTGATTGAGATGGAGGGGAGGGAGGAGGAGATGGAGAGGGAGAGAAAGG
AATCTATGGAGGAAGTACGAGAATTGAGAAAGGGGGGCATGAGGGAGGGC
GAGGATGTGAGGGCGGAGTTGGTACGAATAAAAGGAGAAAATGAGATTCT
GAGGGAAAGGGTAGCAAGGCAAGATGCTTATTTAAGGAGGAGAGTACTGA
AGGAGGGAGGAGGGAGGGAGAGAGTTAGAGGGGGGGGAAGGGCCACTATG
GATCATATGACCAGCTTGTTGCTCAGCTCGTCGGCGGAAGTGGAGAGGGA
GGGAAGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGATTCGTCGTACATGC
TGGACCAGCAGGACTTCAGACTGCAGCAGCGGCTCTTGCAACAGCACTGT
TTTGTGGACCCGGACGGCCATAGAACTCCTGCAGTTCCTTCTGCTGTTGC
TGCTACTGCGACTGCTGTTGGTGTGGGTGGGATGAGGATCAGGAAGGAGG
TGGAAGATAAACAGCACCGGCATTACCAGCACGAGCAGCAGTACGAGGAG
CAGGAGGAGTTGGAGAATGATTTCTCACGGCTTTTGTCGCACTATCGAGA
GAGGGGAGGAAGGTTAGATAATGGTTATGATGATGAGGAGGAAGACGACA
AGAAGTACGAAGGTCGGAATGAGTCTTCTTTTCCGCGGACGTTTCCCCAT
GGGCATAAGCCTTCGAAGGTAACACAGCAGCTGCAGCAGCAGCATGCGAG
GAACGGCCGCACTAGCAGGTGGAGGGATGGCCAAGGCGATGCACACGGTG
CTATAAACGGTAATATTGCTGCTGGCCTATCTTCTCTCCCGCCGCGGACC
TCCGTTTCTACTGCCTCCCCTCCCTCCTTCCCTTCCTCCCGCCATACCAG
CATTCCTCGCCACGGGCCCTCTCCGGCGCGGCTTAAGCTTTTAAGGAGAG
AGGGAGGAGGAGACAAAGGAATTTGGGGTCCCTCCCCACGATGGTGACCC
AGTGATGTGTGTGGGGCTTGTAAATTGGATGTTGTAGGTTGTGGGAAAAG
AAGCTGAGGCATCGAAGGAACTGTGCGTGAACGGGTAGTACTTTTTGCAG
TCCTAAACAAAGAAGCATGGAGCACAGAGCACACAGACAGACGGTCGATA
GATGGAGTCGAAGGAATAAAGTACAAACCAACCGTGAAGCGAAACAGACG
ACCTATGCATGTAAGCACTACCGAGCGGCATAGTGCTTTTGGTTCCAGGC
ACATACGTCCGTTGGAGGGGCAAGGCAATTAATTAACTTACTTTCA back to topCoding sequence (CDS) from alignment at scaffold_30:224594..227339- >mRNA_9021 ID=mRNA_9021|Name=jgi.p|Nanoce1779_2|250088|organism=Nannochloropsis oceanica|type=CDS|length=4278bp|location=Sequence derived from alignment at scaffold_30:224594..227339- (Nannochloropsis oceanica) ATGCAAACGCTATCGGCAGAGCGAGAGGAGCTCCAACAGCGCCTTGATGC CACGCATGCCGAGCTTACCACCACCCAAGCCTCCCTTTATGCCATTCAAA TAAAGGCAGACACTTCGCATTCGGCCTGGATGAGGAGCGAGGAACAACTG GCTATGGCGCGGGAGACGGAAAAGGCTCTGGAAATGGCAATGGAGAGGAT GCGGGAGGAGGAGAAGGAGAGAGAGAGCCGGAGGGATGAAGAGGTTGGAG CAGAGAGGAGGGAGAAGGAGGAGATGGAGCGGCTGCTGCAGGCGAGTCGG AAAGAAATGAGAGATTTAAAAATGAGGTTGGAAGAGAATTTAGAGAGGGA GCAGGACATTGCACAAGCGAGGCGAAAGGCGGAGGAAGCAGTGACAGGCC TCCGGATAGAAAACGAGGCATGTCGGAAGAAGGTCTTGTTGTTTCAAAAA GAACACCAAGAAATCAGCTTGAGGCTCAGCAATGCACGCCACGAGAAGGA GGCACAATGGCGTCAAACACGAGAGGAGAACGAGGGAAGCATGAGAAAAA TCCGCGAGGAAAAAGAGGAATGCAGGCGGAAAGTGGATGAGTTGAAGAGG GAGCTCAAGGTGGTGGTGGGTGTGAGTGTGTGCAACGCCGACAAGGTGAA AGAGCTAGAGGGCGAGATAGAAAGGATGGGCTGGGAGAAGGAGAGGGTGG AGTTGGAGAGAAAGCGGGAGATGGAGCGGTGGGAGGAGGAGGAGAGGAGG AGGAGGGAGCAGGGGGAGGAGGAGGGGAGGGAGAGGGATAGGAGGTTGGA ATGGTATCGGAAGAGGGTGATTGAGATGGAGGGGAGGGAGGAGGAGATGG AGAGGGAGAGAAAGGAATCTATGGAGGAAGTACGAGAATTGAGAAAGGGG GGCATGAGGGAGGGCGAGGATGTGAGGGCGGAGTTGGTACGAATAAAAGG AGAAAATGAGATTCTGAGGGAAAGGGTAGCAAGGCAAGATGCTTATTTAA GGAGGAGAGTACTGAAGGAGGGAGGAGGGAGGGAGAGAGTTAGAGGGGGG GGAAGGGCCACTATGGATCATATGACCAGCTTGTTGCTCAGCTCGTCGGC GGAAGTGGAGAGGGAGGGAAGGAGGGAGGGAGGGAGGGAGGGAGGGAGGG ATTCGTCGTACATGCTGGACCAGCAGGACTTCAGACTGCAGCAGCGGCTC TTGCAACAGCACTGTTTTGTGGACCCGGACGGCCATAGAACTCCTGCAGT TCCTTCTGCTGTTGCTGCTACTGCGACTGCTGTTGGTGTGGGTGGGATGA GGATCAGGAAGGAGGTGGAAGATAAACAGCACCGGCATTACCAGCACGAG CAGCAGTACGAGGAGCAGGAGGAGTTGGAGAATGATTTCTCACGGCTTTT GTCGCACTATCGAGAGAGGGGAGGAAGGTTAGATAATGGTTATGATGATG AGGAGGAAGACGACAAGAAGTACGAAGGTCGGAATGAGTCTTCTTTTCCG CGGACGTTTCCCCATGGGCATAAGCCTTCGAAGGTAACACAGCAGCTGCA GCAGCAGCATGCGAGGAACGGCCGCACTAGCAGGTGGAGGGATGGCCAAG GCGATGCACACGGTGCTATAAACGGTAATATTGCTGCTGGCCTATCTTCT CTCCCGCCGCGGACCTCCGTTTCTACTGCCTCCCCTCCCTCCTTCCCTTC CTCCCGCCATACCAGCATTCCTCGCCACGGGCCCTCTCCGGCGCGGCTTA AGCTTTTAAGGAGAGAGGGAGGAGGAGACAAAGGAATTTGGGGTCCCTCC CCACGATGGTGAATGATGGAGGGGACGGGCGCGTACTCCACCGTCCTCCC CACCGTTACCACCGGCGGCAGCAACGAAGAACATTTCAATCTTCTCCTCC AAATCCAGCAGCTCCAGGATAAATGCACGTACCTTGCGGGGGGCACCAAT GGAGTGCAACTCACCGAAATCCTGATCGAAAAAGAGGAGGAATGCCGAGA CAAGGATCGGGCCATGTCATCACTCGAAGAGGAAATGAATCGTTTAAAGG AGGTCCTCATGCGGATGGAGCAGGAAAAGGCGGCACTACAGGGGCTGGTG CACGAGCAAGGGGTATCTATCACGGGTCTAACGAAGCAGATGCAAACGCT ATCGGCAGAGCGAGAGGAGCTCCAACAGCGCCTTGATGCCACGCATGCCG AGCTTACCACCACCCAAGCCTCCCTTTATGCCATTCAAATAAAGGCAGAC ACTTCGCATTCGGCCTGGATGAGGAGCGAGGAACAACTGGCTATGGCGCG GGAGACGGAAAAGGCTCTGGAAATGGCAATGGAGAGGATGCGGGAGGAGG AGAAGGAGAGAGAGAGCCGGAGGGATGAAGAGGTTGGAGCAGAGAGGAGG GAGAAGGAGGAGATGGAGCGGCTGCTGCAGGCGAGTCGGAAAGAAATGAG AGATTTAAAAATGAGGTTGGAAGAGAATTTAGAGAGGGAGCAGGACATTG CACAAGCGAGGCGAAAGGCGGAGGAAGCAGTGACAGGCCTCCGGATAGAA AACGAGGCATGTCGGAAGAAGGTCTTGTTGTTTCAAAAAGAACACCAAGA AATCAGCTTGAGGCTCAGCAATGCACGCCACGAGAAGGAGGCACAATGGC GTCAAACACGAGAGGAGAACGAGGGAAGCATGAGAAAAATCCGCGAGGAA AAAGAGGAATGCAGGCGGAAAGTGGATGAGTTGAAGAGGGAGCTCAAGGT GGTGGTGGGTGTGAGTGTGTGCAACGCCGACAAGGTGAAAGAGCTAGAGG GCGAGATAGAAAGGATGGGCTGGGAGAAGGAGAGGGTGGAGTTGGAGAGA AAGCGGGAGATGGAGCGGTGGGAGGAGGAGGAGAGGAGGAGGAGGGAGCA GGGGGAGGAGGAGGGGAGGGAGAGGGATAGGAGGTTGGAATGGTATCGGA AGAGGGTGATTGAGATGGAGGGGAGGGAGGAGGAGATGGAGAGGGAGAGA AAGGAATCTATGGAGGAAGTACGAGAATTGAGAAAGGGGGGCATGAGGGA GGGCGAGGATGTGAGGGCGGAGTTGGTACGAATAAAAGGAGAAAATGAGA TTCTGAGGGAAAGGGTAGCAAGGCAAGATGCTTATTTAAGGAGGAGAGTA CTGAAGGAGGGAGGAGGGAGGGAGAGAGTTAGAGGGGGGGGAAGGGCCAC TATGGATCATATGACCAGCTTGTTGCTCAGCTCGTCGGCGGAAGTGGAGA GGGAGGGAAGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGATTCGTCGTAC ATGCTGGACCAGCAGGACTTCAGACTGCAGCAGCGGCTCTTGCAACAGCA CTGTTTTGTGGACCCGGACGGCCATAGAACTCCTGCAGTTCCTTCTGCTG TTGCTGCTACTGCGACTGCTGTTGGTGTGGGTGGGATGAGGATCAGGAAG GAGGTGGAAGATAAACAGCACCGGCATTACCAGCACGAGCAGCAGTACGA GGAGCAGGAGGAGTTGGAGAATGATTTCTCACGGCTTTTGTCGCACTATC GAGAGAGGGGAGGAAGGTTAGATAATGGTTATGATGATGAGGAGGAAGAC GACAAGAAGTACGAAGGTCGGAATGAGTCTTCTTTTCCGCGGACGTTTCC CCATGGGCATAAGCCTTCGAAGGTAACACAGCAGCTGCAGCAGCAGCATG CGAGGAACGGCCGCACTAGCAGGTGGAGGGATGGCCAAGGCGATGCACAC GGTGCTATAAACGGTAATATTGCTGCTGGCCTATCTTCTCTCCCGCCGCG GACCTCCGTTTCTACTGCCTCCCCTCCCTCCTTCCCTTCCTCCCGCCATA CCAGCATTCCTCGCCACGGGCCCTCTCCGGCGCGGCTTAAGCTTTTAAGG AGAGAGGGAGGAGGAGACAAAGGAATTTGGGGTCCCTCCCCACGATGGTG AATGATGGAGGGGACGGGCGCGTACTCCACCGTCCTCCCCACCGTTACCA CCGGCGGCAGCAACGAAGAACATTTCAATCTTCTCCTCCAAATCCAGCAG CTCCAGGATAAATGCACGTACCTTGCGGGGGGCACCAATGGAGTGCAACT CACCGAAATCCTGATCGAAAAAGAGGAGGAATGCCGAGACAAGGATCGGG CCATGTCATCACTCGAAGAGGAAATGAATCGTTTAAAGGAGGTCCTCATG CGGATGGAGCAGGAAAAGGCGGCACTACAGGGGCTGGTGCACGAGCAAGG GGTATCTATCACGGGTCTAACGAAGCAG back to top
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