jgi.p|Nanoce1779_2|606810, mRNA_9188 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|606810
Unique NamemRNA_9188
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1376
Alignment locationscaffold_36:173278..174909 -

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Properties
Property NameValue
TranscriptId606896
TrackFilteredModels2
ProteinId606810
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_36supercontigscaffold_36:173278..174909 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|606810gene_9188Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|606810mRNA_9188-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9188CDS_9188Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9188 ID=mRNA_9188|Name=jgi.p|Nanoce1779_2|606810|organism=Nannochloropsis oceanica|type=mRNA|length=1376bp
ACAGGCTCACATCGGATTTGAGGTTCACAAATTCCAGTCAGTCAGTCAGT
CATGTACACGCCTTCCTCCTCGTCCACTTCCCCTGCAAGTATGCGGCGGG
TGCAGGCACTAAGTGCGGCAGGCGGCTCATCGGGGGACAGCAAGACGGCA
GCCGCCCGTATTTTGGGTTCGGGTACGGCAGGGATTTTTGAGCTGGCCTT
GTTCCACCCCTTCGATACGGCCGCTAAACGATTGATGAGTTGGGAGGGCC
GCATTATCGTCTCAGGTCAAACTTTAACCAATCTGAACAACGCCGTCTTC
CGCAATCAGGCATCTGCCGCACCCCTCACCAAGTGGATGTCTCTCTTTCC
CGGAGTCTCTTTCGGTGCCGCCTATAAGGTCTTGCAACGCGCCTATAAAT
TCGGCGGGCAGCCATTCGTGCGTGATTATTTGACGACGTATCACAACGAT
ATGTTTGAAAGCTCTTTTGGAAAAAGGAACGGGAAGACGATGATCTATGC
GACTGCTGGCAGCATCATGGGGGTGGGTGAGATCGTGCTGCTGCCGCTGG
ATGTCTTAAAAATCAAGGCCCAGACCAATCCGGAGGCGTTCAAGGGCCGT
GGATTGATGAAGATCATTTCGGACGAGGGGGTTAATTTATACCGAGGGGC
GAGCTGGACGGCGGCTCGGAATGCGCCGGGCTCGTTTGCGTTGTTCGGCG
GGTCGGCAGCCATGAAGGATTATGTGTTTAAGCTGGAGAAGTACAGCGAT
GCCACCTTTTTCCAGGACTCCATGGCGAGCGTGGCAGGGGCCGTAGCCTC
GATTACGGTAGCACAGCCTCTGGACGTAATCAAAACACGCATCCAGAGGC
GCGATTTCAACGATAAGACCTCGGGCACGCGCATTCTGGCCGACCTGGTC
AAGAAGGAGGGGTTTGGGGCATTCTTCAAGGGGCTGACGCCCAAGCTTAT
CGTGATCGGCCCCAAGCTGGTCTTCTCCTTCACCATCGCCCAGCAGTTGA
TGTCCTTCTTCGAGAAGCGCTTTTAAGTGAGGAGGAAAGGAGGATGGAGG
GGAGAAAAGGAAGGAGGGTAGAGTATTCTTTTTGTCTGGGTTTTGAGTTG
AGAGGAAAGATGGTAAAAAAGGAATGAGAGGAAGAGGAGGAGGATGCGCG
GGGCATCGGAGATATTTTTGTAGGTGCATGATTGAAAAGCAGGGAGAAAG
GGAGAAAAAGTATGTACGCTTGGGAAGAGGGAGAGGGAAAGGGACAGGGA
GAGGGAGAAAGAAAGAGATGCACACTCACAGCCACCAATTTTTGTGTCGA
AGAAGTAATTTAACCCAAAAACATCGACGAAAAAATGAACTATACGTGAT
CCCATCGTATGTAAAAAGAAGAAGAG
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protein sequence of jgi.p|Nanoce1779_2|606810

>mRNA_9188-protein ID=mRNA_9188-protein|Name=jgi.p|Nanoce1779_2|606810|organism=Nannochloropsis oceanica|type=polypeptide|length=325bp
MYTPSSSSTSPASMRRVQALSAAGGSSGDSKTAAARILGSGTAGIFELAL
FHPFDTAAKRLMSWEGRIIVSGQTLTNLNNAVFRNQASAAPLTKWMSLFP
GVSFGAAYKVLQRAYKFGGQPFVRDYLTTYHNDMFESSFGKRNGKTMIYA
TAGSIMGVGEIVLLPLDVLKIKAQTNPEAFKGRGLMKIISDEGVNLYRGA
SWTAARNAPGSFALFGGSAAMKDYVFKLEKYSDATFFQDSMASVAGAVAS
ITVAQPLDVIKTRIQRRDFNDKTSGTRILADLVKKEGFGAFFKGLTPKLI
VIGPKLVFSFTIAQQLMSFFEKRF*
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mRNA from alignment at scaffold_36:173278..174909-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9188 ID=mRNA_9188|Name=jgi.p|Nanoce1779_2|606810|organism=Nannochloropsis oceanica|type=mRNA|length=1632bp|location=Sequence derived from alignment at scaffold_36:173278..174909- (Nannochloropsis oceanica)
ACAGGCTCACATCGGATTTGAGGTTCACAAATTCCAGTCAGTCAGTCAGT
CATGTACACGCCTTCCTCCTCGTCCACTTCCCCTGCAAGTATGCGGCGGG
TGCAGGCACTAAGTGCGGCAGGCGGCTCATCGGGGGACAGCAAGACGGCA
GCCGCCCGTATTTTGGGTTCGGGTACGGCAGGGATTTTTGAGCTGGTACG
TTTGATCAATAAGCATGTCCTCAATCCTTTCAAATTGTCTTGCTTATCCC
ATGCATATGACTCACCTTTCCCTTTCACTTCGCCCTTCCCCTCCATTCAA
ATCAAAAACAAAGGCCTTGTTCCACCCCTTCGATACGGCCGCTAAACGAT
TGATGAGTTGGGAGGGCCGCATTATCGTCTCAGGTCAAACTTTAACCAAT
CTGAACAACGCCGTCTTCCGCAATCAGGCATCTGCCGCACCCCTCACCAA
GTGGATGTCTCTCTTTCCCGGAGTCTCTTTCGGTGCCGCCTATAAGGTCT
TGCAACGCGCCTATAAATTCGGCGGGCAGCCATTCGTGCGTGATTATTTG
ACGACGTATCACAACGATATGTTTGAAAGCTCTTTTGGAAAAAGGAACGG
GAAGACGATGATCTATGCGACTGCTGGCAGCATCATGGGGGTGGGTGAGA
TCGTGCTGCTGCCGCTGGATGTCTTAAAAATCAAGGCCCAGACCAATCCG
GAGGCGTTCAAGGGCCGTGGATTGATGAAGATCATTTCGGACGAGGGGGT
TAATTTATACCGAGGGGCGAGCTGGACGGCGGCTCGGAATGCGCCGGGCT
CGTTTGCGTTGTTCGGCGGGTCGGCAGCCATGAAGGATTATGTGTTTAAG
CTGGAGAAGTACAGCGATGCCACCTTTTTCCAGGACTCCATGGCGAGCGT
GGCAGGGGCCGTAGCCTCGATTACGGTAGCACAGCCTCTGGTATGAACGG
GAGGAAGGAAGAGATAGAGGGACAGGGACGGGGAGGAGGAACATGTGTCT
TTTTTTTCTTGCTCTTTTCGCCCCTATCCTCACTTCCTCCCCTACACCGT
CCATCCACTCCTTCCTCTACCTTTACAGGACGTAATCAAAACACGCATCC
AGAGGCGCGATTTCAACGATAAGACCTCGGGCACGCGCATTCTGGCCGAC
CTGGTCAAGAAGGAGGGGTTTGGGGCATTCTTCAAGGGGCTGACGCCCAA
GCTTATCGTGATCGGCCCCAAGCTGGTCTTCTCCTTCACCATCGCCCAGC
AGTTGATGTCCTTCTTCGAGAAGCGCTTTTAAGTGAGGAGGAAAGGAGGA
TGGAGGGGAGAAAAGGAAGGAGGGTAGAGTATTCTTTTTGTCTGGGTTTT
GAGTTGAGAGGAAAGATGGTAAAAAAGGAATGAGAGGAAGAGGAGGAGGA
TGCGCGGGGCATCGGAGATATTTTTGTAGGTGCATGATTGAAAAGCAGGG
AGAAAGGGAGAAAAAGTATGTACGCTTGGGAAGAGGGAGAGGGAAAGGGA
CAGGGAGAGGGAGAAAGAAAGAGATGCACACTCACAGCCACCAATTTTTG
TGTCGAAGAAGTAATTTAACCCAAAAACATCGACGAAAAAATGAACTATA
CGTGATCCCATCGTATGTAAAAAGAAGAAGAG
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Coding sequence (CDS) from alignment at scaffold_36:173278..174909-

>mRNA_9188 ID=mRNA_9188|Name=jgi.p|Nanoce1779_2|606810|organism=Nannochloropsis oceanica|type=CDS|length=2925bp|location=Sequence derived from alignment at scaffold_36:173278..174909- (Nannochloropsis oceanica)
GACGTAATCAAAACACGCATCCAGAGGCGCGATTTCAACGATAAGACCTC
GGGCACGCGCATTCTGGCCGACCTGGTCAAGAAGGAGGGGTTTGGGGCAT
TCTTCAAGGGGCTGACGCCCAAGCTTATCGTGATCGGCCCCAAGCTGGTC
TTCTCCTTCACCATCGCCCAGCAGTTGATGTCCTTCTTCGAGAAGCGCTT
TTAAGCCTTGTTCCACCCCTTCGATACGGCCGCTAAACGATTGATGAGTT
GGGAGGGCCGCATTATCGTCTCAGGTCAAACTTTAACCAATCTGAACAAC
GCCGTCTTCCGCAATCAGGCATCTGCCGCACCCCTCACCAAGTGGATGTC
TCTCTTTCCCGGAGTCTCTTTCGGTGCCGCCTATAAGGTCTTGCAACGCG
CCTATAAATTCGGCGGGCAGCCATTCGTGCGTGATTATTTGACGACGTAT
CACAACGATATGTTTGAAAGCTCTTTTGGAAAAAGGAACGGGAAGACGAT
GATCTATGCGACTGCTGGCAGCATCATGGGGGTGGGTGAGATCGTGCTGC
TGCCGCTGGATGTCTTAAAAATCAAGGCCCAGACCAATCCGGAGGCGTTC
AAGGGCCGTGGATTGATGAAGATCATTTCGGACGAGGGGGTTAATTTATA
CCGAGGGGCGAGCTGGACGGCGGCTCGGAATGCGCCGGGCTCGTTTGCGT
TGTTCGGCGGGTCGGCAGCCATGAAGGATTATGTGTTTAAGCTGGAGAAG
TACAGCGATGCCACCTTTTTCCAGGACTCCATGGCGAGCGTGGCAGGGGC
CGTAGCCTCGATTACGGTAGCACAGCCTCTGATGTACACGCCTTCCTCCT
CGTCCACTTCCCCTGCAAGTATGCGGCGGGTGCAGGCACTAAGTGCGGCA
GGCGGCTCATCGGGGGACAGCAAGACGGCAGCCGCCCGTATTTTGGGTTC
GGGTACGGCAGGGATTTTTGAGCTGGACGTAATCAAAACACGCATCCAGA
GGCGCGATTTCAACGATAAGACCTCGGGCACGCGCATTCTGGCCGACCTG
GTCAAGAAGGAGGGGTTTGGGGCATTCTTCAAGGGGCTGACGCCCAAGCT
TATCGTGATCGGCCCCAAGCTGGTCTTCTCCTTCACCATCGCCCAGCAGT
TGATGTCCTTCTTCGAGAAGCGCTTTTAAGCCTTGTTCCACCCCTTCGAT
ACGGCCGCTAAACGATTGATGAGTTGGGAGGGCCGCATTATCGTCTCAGG
TCAAACTTTAACCAATCTGAACAACGCCGTCTTCCGCAATCAGGCATCTG
CCGCACCCCTCACCAAGTGGATGTCTCTCTTTCCCGGAGTCTCTTTCGGT
GCCGCCTATAAGGTCTTGCAACGCGCCTATAAATTCGGCGGGCAGCCATT
CGTGCGTGATTATTTGACGACGTATCACAACGATATGTTTGAAAGCTCTT
TTGGAAAAAGGAACGGGAAGACGATGATCTATGCGACTGCTGGCAGCATC
ATGGGGGTGGGTGAGATCGTGCTGCTGCCGCTGGATGTCTTAAAAATCAA
GGCCCAGACCAATCCGGAGGCGTTCAAGGGCCGTGGATTGATGAAGATCA
TTTCGGACGAGGGGGTTAATTTATACCGAGGGGCGAGCTGGACGGCGGCT
CGGAATGCGCCGGGCTCGTTTGCGTTGTTCGGCGGGTCGGCAGCCATGAA
GGATTATGTGTTTAAGCTGGAGAAGTACAGCGATGCCACCTTTTTCCAGG
ACTCCATGGCGAGCGTGGCAGGGGCCGTAGCCTCGATTACGGTAGCACAG
CCTCTGATGTACACGCCTTCCTCCTCGTCCACTTCCCCTGCAAGTATGCG
GCGGGTGCAGGCACTAAGTGCGGCAGGCGGCTCATCGGGGGACAGCAAGA
CGGCAGCCGCCCGTATTTTGGGTTCGGGTACGGCAGGGATTTTTGAGCTG
GACGTAATCAAAACACGCATCCAGAGGCGCGATTTCAACGATAAGACCTC
GGGCACGCGCATTCTGGCCGACCTGGTCAAGAAGGAGGGGTTTGGGGCAT
TCTTCAAGGGGCTGACGCCCAAGCTTATCGTGATCGGCCCCAAGCTGGTC
TTCTCCTTCACCATCGCCCAGCAGTTGATGTCCTTCTTCGAGAAGCGCTT
TTAAGCCTTGTTCCACCCCTTCGATACGGCCGCTAAACGATTGATGAGTT
GGGAGGGCCGCATTATCGTCTCAGGTCAAACTTTAACCAATCTGAACAAC
GCCGTCTTCCGCAATCAGGCATCTGCCGCACCCCTCACCAAGTGGATGTC
TCTCTTTCCCGGAGTCTCTTTCGGTGCCGCCTATAAGGTCTTGCAACGCG
CCTATAAATTCGGCGGGCAGCCATTCGTGCGTGATTATTTGACGACGTAT
CACAACGATATGTTTGAAAGCTCTTTTGGAAAAAGGAACGGGAAGACGAT
GATCTATGCGACTGCTGGCAGCATCATGGGGGTGGGTGAGATCGTGCTGC
TGCCGCTGGATGTCTTAAAAATCAAGGCCCAGACCAATCCGGAGGCGTTC
AAGGGCCGTGGATTGATGAAGATCATTTCGGACGAGGGGGTTAATTTATA
CCGAGGGGCGAGCTGGACGGCGGCTCGGAATGCGCCGGGCTCGTTTGCGT
TGTTCGGCGGGTCGGCAGCCATGAAGGATTATGTGTTTAAGCTGGAGAAG
TACAGCGATGCCACCTTTTTCCAGGACTCCATGGCGAGCGTGGCAGGGGC
CGTAGCCTCGATTACGGTAGCACAGCCTCTGATGTACACGCCTTCCTCCT
CGTCCACTTCCCCTGCAAGTATGCGGCGGGTGCAGGCACTAAGTGCGGCA
GGCGGCTCATCGGGGGACAGCAAGACGGCAGCCGCCCGTATTTTGGGTTC
GGGTACGGCAGGGATTTTTGAGCTG
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Synonyms
Publications