jgi.p|Nanoce1779_2|578950, mRNA_2074 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|578950
Unique Name	mRNA_2074
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2487
Alignment location	scaffold_4:718319..720805 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	579036
Track	FilteredModels2
ProteinId	578950

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_4	supercontig	scaffold_4:718319..720805 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|578950	gene_2074	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|578950	mRNA_2074-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2074	CDS_2074	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_4:718319..720805+
coding sequence from alignment at scaffold_4:718319..720805+

mRNA sequence

>mRNA_2074 ID=mRNA_2074|Name=jgi.p|Nanoce1779_2|578950|organism=Nannochloropsis oceanica|type=mRNA|length=2487bp
CAGCACCACAAGCTCGTTCCCATGGCCACTTCGGGCCTGGCCGAGCTGGA
CCGCATTGACATGCCGCTTCAAAAAACAGAACTTCACTTGTCCAACCCAA
GCCAAGTGCCGAGCAGCCGAAGCCTGCTATTATCACTATCAAGACCTTCT
GGTGCCTCTTCCCGCCTCTCTCCACCGCCGCTGCACAGCCCCCCGGCCTC
GCAAATAGGGTCTGTAGAAGAAGTGCCAGCAGCTCGCGTGGATGCCGCCA
TTTATTCCCGACTGCAACCGCGACATCTTCCCTCTTCCCCGACGCTAGCA
GCAGCACGCTCGACCCCCCGCCCGCTCCCCTCTTCTTTCATGCCAAGCTC
TACACCACCCCCGACACCACTGTCAGAGCAATCACCATCTATGGCACGCT
CAGTCTCACAATTGGTACACTCAACCACCTCCGTCCGCGGCCCTTCCTCA
TCATCGTCACCATGCCCTGCCCCCCCGACGTCCCAGCCGTGCATTCGCTT
TACCAAGCCCACCGTGTCGCAGACGCTCTTGCGGCTCGCACAACCCCGGA
ACAAAATTTATGCTGAGCGAGAGCGACAACGCGAGGAACGAGAAATAGCC
AAGACGATACAAGAAAATTGTACATTCAAGCCCAACCTTTGTCAAGGCAC
GGAGAAGCGCGCCGCCGCTGCTGCCGCCGCCTCCAAGGGCGAGGTGCCCA
AGTCCTTGCCAGACCGTCTAAAAGAGAAGCAAGAAGCGGCCGAGGCAGCG
CGACTACGTCGACAGGAAAAGCTCGAGCTTGAACTAGCGGCCGAGTGCAC
CTTTCGACCAGTCTTGTACACGGACGAGGCCCGACTTATGTCTGGATCAA
CCTTCTGGTCTTCCCCTTTGGCTTCCCCCTGCTCCTCGCCCTTGCGGCGC
CCCGGTCAAGAAAAGCCTTTGCACCAGCGATTAGGAGACGTGCAACGTGC
TCGGCGTGATAATCTTAATCGGTTGCGGGCCCGAGAAGAGAAGAAGGAAG
CAGCAGAGTGGACTTTTAGCCCTCGCCTTTGTAGCGTGTCAGAGGAGATT
GCCCGGCAACGGCGCCAGGAGCAGGACTATCAAAAAATGTACGACCAGCG
TATCAACGATGAGAAGGATCAGCCACAATCTGTCAAGAGCGGAGCGAAAT
TTGATTACTTGGCCTATGAGTCGCAACGGTTCTTGCAGCGGCGCATTGCC
AAGCAGTTAGACTTGGAGCAGGAGCAATTGGCGGAATGTCATTTTTCCCC
ACGCCTATGTGAGAAAACCGAAAAGCTGATTGCGCACGCAGGCTTACCAC
TGGATTTTGAGTCGCGCCAGTACGTGTGGAAAGAGCAAAGGCAACGCAAG
GCTGCTGTAATTGAAGCAAACAAAGCTGCAGAGGAAGATGAATGGTTCAG
ACCGGCCCTCAAGCCCTACAGCGAAGCTATCGTGGCCCGCCTCCGACTGC
GCCTAGACCAAGAGGACATCAACAGGAGGCACACCGATAGCAACAGCAAC
AGCGACGACGACCCTGTCGTACAGCGGCTGGCAGTCAAGGAGATCGCCAG
GCGGGAGGCCGCCCGCCTGCATCGGACCGAGGCCTTTTATGCCCAGTATC
TCTTCCAGCCTTCCCTCAACCCCGTCTCTCGTGCCTTGGGCCGACCCTCT
ACCACAGACGAGCTTGCATACAACTGGCGCGGGGAGATGGCCCGGAACAA
GGCTTTTGAAGAAGCGCAGGAACGGTTTGAGGCCGAGTGCACATTTCAAC
CAGTACTTCAGTCCTCCTATTCTTCTTCGTCTCTTCCCCTTGCTGCCTCC
GCCCCTACAGTCCCAGTAGCAGCAACGTCAAAAGCAATAGCAACTAGGTG
CCGCCAATCTCTCAGTACTAGTGCTTTGGTCGCTATCGGCAACGTTTCGG
TGCCTGCAACAACAAAAATACAGCTTAGGCAACCGTCGTCGCTCTCCATC
GCCGGCGATTGGGAAGTCCGGCGACGGGACAAGGAATCGCTTGCGGCTAA
GGCTCATGCGGCTCGTGAAGCGGAAGAGCTGCAGGATTGCACGTGGCAGC
CGGAACTTGCCACAAAGGCCATACCCACTAGGCGTCGGCAAAAGCAGCAG
CAATCCCCGGTCCTGGTGCGGGGTCTCGGGAAGTTCATAGCTCGCACGCA
AGCAGCTGCACAGCAGCGGGAGGAGCGGGCTATCGCGACCGCTGCACTGG
CTGCTGGGGGAACCAAGAGGACCGGCGTGACTACTAATTCGGGTGCTGAG
CAGGTCAAGACCACCATGGCGCGGCCTTTTCAAATTAGCTCTCGTCCACA
AGGTCAACGTGGTAGCCGAGCAAGCGTGAGAGCCGAGGTGGAGAAACTTG
CGCAGGCCACCTTGACTTTTCGACCAAAGACCATTGAGCGACGGAAGCGT
GCAGCGCTACAAAATATGCTTGAGGGAGGAGTGTCAACATATGTATAAAA
CGATGAAGAAAACCTAATCAATACATTGATGTTTTAC

protein sequence of jgi.p|Nanoce1779_2|578950

>mRNA_2074-protein ID=mRNA_2074-protein|Name=jgi.p|Nanoce1779_2|578950|organism=Nannochloropsis oceanica|type=polypeptide|length=809bp
MATSGLAELDRIDMPLQKTELHLSNPSQVPSSRSLLLSLSRPSGASSRLS
PPPLHSPPASQIGSVEEVPAARVDAAIYSRLQPRHLPSSPTLAAARSTPR
PLPSSFMPSSTPPPTPLSEQSPSMARSVSQLVHSTTSVRGPSSSSSPCPA
PPTSQPCIRFTKPTVSQTLLRLAQPRNKIYAERERQREEREIAKTIQENC
TFKPNLCQGTEKRAAAAAAASKGEVPKSLPDRLKEKQEAAEAARLRRQEK
LELELAAECTFRPVLYTDEARLMSGSTFWSSPLASPCSSPLRRPGQEKPL
HQRLGDVQRARRDNLNRLRAREEKKEAAEWTFSPRLCSVSEEIARQRRQE
QDYQKMYDQRINDEKDQPQSVKSGAKFDYLAYESQRFLQRRIAKQLDLEQ
EQLAECHFSPRLCEKTEKLIAHAGLPLDFESRQYVWKEQRQRKAAVIEAN
KAAEEDEWFRPALKPYSEAIVARLRLRLDQEDINRRHTDSNSNSDDDPVV
QRLAVKEIARREAARLHRTEAFYAQYLFQPSLNPVSRALGRPSTTDELAY
NWRGEMARNKAFEEAQERFEAECTFQPVLQSSYSSSSLPLAASAPTVPVA
ATSKAIATRCRQSLSTSALVAIGNVSVPATTKIQLRQPSSLSIAGDWEVR
RRDKESLAAKAHAAREAEELQDCTWQPELATKAIPTRRRQKQQQSPVLVR
GLGKFIARTQAAAQQREERAIATAALAAGGTKRTGVTTNSGAEQVKTTMA
RPFQISSRPQGQRGSRASVRAEVEKLAQATLTFRPKTIERRKRAALQNML
EGGVSTYV*

mRNA from alignment at scaffold_4:718319..720805+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2074 ID=mRNA_2074|Name=jgi.p|Nanoce1779_2|578950|organism=Nannochloropsis oceanica|type=mRNA|length=2487bp|location=Sequence derived from alignment at scaffold_4:718319..720805+ (Nannochloropsis oceanica)
CAGCACCACAAGCTCGTTCCCATGGCCACTTCGGGCCTGGCCGAGCTGGA
CCGCATTGACATGCCGCTTCAAAAAACAGAACTTCACTTGTCCAACCCAA
GCCAAGTGCCGAGCAGCCGAAGCCTGCTATTATCACTATCAAGACCTTCT
GGTGCCTCTTCCCGCCTCTCTCCACCGCCGCTGCACAGCCCCCCGGCCTC
GCAAATAGGGTCTGTAGAAGAAGTGCCAGCAGCTCGCGTGGATGCCGCCA
TTTATTCCCGACTGCAACCGCGACATCTTCCCTCTTCCCCGACGCTAGCA
GCAGCACGCTCGACCCCCCGCCCGCTCCCCTCTTCTTTCATGCCAAGCTC
TACACCACCCCCGACACCACTGTCAGAGCAATCACCATCTATGGCACGCT
CAGTCTCACAATTGGTACACTCAACCACCTCCGTCCGCGGCCCTTCCTCA
TCATCGTCACCATGCCCTGCCCCCCCGACGTCCCAGCCGTGCATTCGCTT
TACCAAGCCCACCGTGTCGCAGACGCTCTTGCGGCTCGCACAACCCCGGA
ACAAAATTTATGCTGAGCGAGAGCGACAACGCGAGGAACGAGAAATAGCC
AAGACGATACAAGAAAATTGTACATTCAAGCCCAACCTTTGTCAAGGCAC
GGAGAAGCGCGCCGCCGCTGCTGCCGCCGCCTCCAAGGGCGAGGTGCCCA
AGTCCTTGCCAGACCGTCTAAAAGAGAAGCAAGAAGCGGCCGAGGCAGCG
CGACTACGTCGACAGGAAAAGCTCGAGCTTGAACTAGCGGCCGAGTGCAC
CTTTCGACCAGTCTTGTACACGGACGAGGCCCGACTTATGTCTGGATCAA
CCTTCTGGTCTTCCCCTTTGGCTTCCCCCTGCTCCTCGCCCTTGCGGCGC
CCCGGTCAAGAAAAGCCTTTGCACCAGCGATTAGGAGACGTGCAACGTGC
TCGGCGTGATAATCTTAATCGGTTGCGGGCCCGAGAAGAGAAGAAGGAAG
CAGCAGAGTGGACTTTTAGCCCTCGCCTTTGTAGCGTGTCAGAGGAGATT
GCCCGGCAACGGCGCCAGGAGCAGGACTATCAAAAAATGTACGACCAGCG
TATCAACGATGAGAAGGATCAGCCACAATCTGTCAAGAGCGGAGCGAAAT
TTGATTACTTGGCCTATGAGTCGCAACGGTTCTTGCAGCGGCGCATTGCC
AAGCAGTTAGACTTGGAGCAGGAGCAATTGGCGGAATGTCATTTTTCCCC
ACGCCTATGTGAGAAAACCGAAAAGCTGATTGCGCACGCAGGCTTACCAC
TGGATTTTGAGTCGCGCCAGTACGTGTGGAAAGAGCAAAGGCAACGCAAG
GCTGCTGTAATTGAAGCAAACAAAGCTGCAGAGGAAGATGAATGGTTCAG
ACCGGCCCTCAAGCCCTACAGCGAAGCTATCGTGGCCCGCCTCCGACTGC
GCCTAGACCAAGAGGACATCAACAGGAGGCACACCGATAGCAACAGCAAC
AGCGACGACGACCCTGTCGTACAGCGGCTGGCAGTCAAGGAGATCGCCAG
GCGGGAGGCCGCCCGCCTGCATCGGACCGAGGCCTTTTATGCCCAGTATC
TCTTCCAGCCTTCCCTCAACCCCGTCTCTCGTGCCTTGGGCCGACCCTCT
ACCACAGACGAGCTTGCATACAACTGGCGCGGGGAGATGGCCCGGAACAA
GGCTTTTGAAGAAGCGCAGGAACGGTTTGAGGCCGAGTGCACATTTCAAC
CAGTACTTCAGTCCTCCTATTCTTCTTCGTCTCTTCCCCTTGCTGCCTCC
GCCCCTACAGTCCCAGTAGCAGCAACGTCAAAAGCAATAGCAACTAGGTG
CCGCCAATCTCTCAGTACTAGTGCTTTGGTCGCTATCGGCAACGTTTCGG
TGCCTGCAACAACAAAAATACAGCTTAGGCAACCGTCGTCGCTCTCCATC
GCCGGCGATTGGGAAGTCCGGCGACGGGACAAGGAATCGCTTGCGGCTAA
GGCTCATGCGGCTCGTGAAGCGGAAGAGCTGCAGGATTGCACGTGGCAGC
CGGAACTTGCCACAAAGGCCATACCCACTAGGCGTCGGCAAAAGCAGCAG
CAATCCCCGGTCCTGGTGCGGGGTCTCGGGAAGTTCATAGCTCGCACGCA
AGCAGCTGCACAGCAGCGGGAGGAGCGGGCTATCGCGACCGCTGCACTGG
CTGCTGGGGGAACCAAGAGGACCGGCGTGACTACTAATTCGGGTGCTGAG
CAGGTCAAGACCACCATGGCGCGGCCTTTTCAAATTAGCTCTCGTCCACA
AGGTCAACGTGGTAGCCGAGCAAGCGTGAGAGCCGAGGTGGAGAAACTTG
CGCAGGCCACCTTGACTTTTCGACCAAAGACCATTGAGCGACGGAAGCGT
GCAGCGCTACAAAATATGCTTGAGGGAGGAGTGTCAACATATGTATAAAA
CGATGAAGAAAACCTAATCAATACATTGATGTTTTAC

Coding sequence (CDS) from alignment at scaffold_4:718319..720805+

>mRNA_2074 ID=mRNA_2074|Name=jgi.p|Nanoce1779_2|578950|organism=Nannochloropsis oceanica|type=CDS|length=2427bp|location=Sequence derived from alignment at scaffold_4:718319..720805+ (Nannochloropsis oceanica)
ATGGCCACTTCGGGCCTGGCCGAGCTGGACCGCATTGACATGCCGCTTCA
AAAAACAGAACTTCACTTGTCCAACCCAAGCCAAGTGCCGAGCAGCCGAA
GCCTGCTATTATCACTATCAAGACCTTCTGGTGCCTCTTCCCGCCTCTCT
CCACCGCCGCTGCACAGCCCCCCGGCCTCGCAAATAGGGTCTGTAGAAGA
AGTGCCAGCAGCTCGCGTGGATGCCGCCATTTATTCCCGACTGCAACCGC
GACATCTTCCCTCTTCCCCGACGCTAGCAGCAGCACGCTCGACCCCCCGC
CCGCTCCCCTCTTCTTTCATGCCAAGCTCTACACCACCCCCGACACCACT
GTCAGAGCAATCACCATCTATGGCACGCTCAGTCTCACAATTGGTACACT
CAACCACCTCCGTCCGCGGCCCTTCCTCATCATCGTCACCATGCCCTGCC
CCCCCGACGTCCCAGCCGTGCATTCGCTTTACCAAGCCCACCGTGTCGCA
GACGCTCTTGCGGCTCGCACAACCCCGGAACAAAATTTATGCTGAGCGAG
AGCGACAACGCGAGGAACGAGAAATAGCCAAGACGATACAAGAAAATTGT
ACATTCAAGCCCAACCTTTGTCAAGGCACGGAGAAGCGCGCCGCCGCTGC
TGCCGCCGCCTCCAAGGGCGAGGTGCCCAAGTCCTTGCCAGACCGTCTAA
AAGAGAAGCAAGAAGCGGCCGAGGCAGCGCGACTACGTCGACAGGAAAAG
CTCGAGCTTGAACTAGCGGCCGAGTGCACCTTTCGACCAGTCTTGTACAC
GGACGAGGCCCGACTTATGTCTGGATCAACCTTCTGGTCTTCCCCTTTGG
CTTCCCCCTGCTCCTCGCCCTTGCGGCGCCCCGGTCAAGAAAAGCCTTTG
CACCAGCGATTAGGAGACGTGCAACGTGCTCGGCGTGATAATCTTAATCG
GTTGCGGGCCCGAGAAGAGAAGAAGGAAGCAGCAGAGTGGACTTTTAGCC
CTCGCCTTTGTAGCGTGTCAGAGGAGATTGCCCGGCAACGGCGCCAGGAG
CAGGACTATCAAAAAATGTACGACCAGCGTATCAACGATGAGAAGGATCA
GCCACAATCTGTCAAGAGCGGAGCGAAATTTGATTACTTGGCCTATGAGT
CGCAACGGTTCTTGCAGCGGCGCATTGCCAAGCAGTTAGACTTGGAGCAG
GAGCAATTGGCGGAATGTCATTTTTCCCCACGCCTATGTGAGAAAACCGA
AAAGCTGATTGCGCACGCAGGCTTACCACTGGATTTTGAGTCGCGCCAGT
ACGTGTGGAAAGAGCAAAGGCAACGCAAGGCTGCTGTAATTGAAGCAAAC
AAAGCTGCAGAGGAAGATGAATGGTTCAGACCGGCCCTCAAGCCCTACAG
CGAAGCTATCGTGGCCCGCCTCCGACTGCGCCTAGACCAAGAGGACATCA
ACAGGAGGCACACCGATAGCAACAGCAACAGCGACGACGACCCTGTCGTA
CAGCGGCTGGCAGTCAAGGAGATCGCCAGGCGGGAGGCCGCCCGCCTGCA
TCGGACCGAGGCCTTTTATGCCCAGTATCTCTTCCAGCCTTCCCTCAACC
CCGTCTCTCGTGCCTTGGGCCGACCCTCTACCACAGACGAGCTTGCATAC
AACTGGCGCGGGGAGATGGCCCGGAACAAGGCTTTTGAAGAAGCGCAGGA
ACGGTTTGAGGCCGAGTGCACATTTCAACCAGTACTTCAGTCCTCCTATT
CTTCTTCGTCTCTTCCCCTTGCTGCCTCCGCCCCTACAGTCCCAGTAGCA
GCAACGTCAAAAGCAATAGCAACTAGGTGCCGCCAATCTCTCAGTACTAG
TGCTTTGGTCGCTATCGGCAACGTTTCGGTGCCTGCAACAACAAAAATAC
AGCTTAGGCAACCGTCGTCGCTCTCCATCGCCGGCGATTGGGAAGTCCGG
CGACGGGACAAGGAATCGCTTGCGGCTAAGGCTCATGCGGCTCGTGAAGC
GGAAGAGCTGCAGGATTGCACGTGGCAGCCGGAACTTGCCACAAAGGCCA
TACCCACTAGGCGTCGGCAAAAGCAGCAGCAATCCCCGGTCCTGGTGCGG
GGTCTCGGGAAGTTCATAGCTCGCACGCAAGCAGCTGCACAGCAGCGGGA
GGAGCGGGCTATCGCGACCGCTGCACTGGCTGCTGGGGGAACCAAGAGGA
CCGGCGTGACTACTAATTCGGGTGCTGAGCAGGTCAAGACCACCATGGCG
CGGCCTTTTCAAATTAGCTCTCGTCCACAAGGTCAACGTGGTAGCCGAGC
AAGCGTGAGAGCCGAGGTGGAGAAACTTGCGCAGGCCACCTTGACTTTTC
GACCAAAGACCATTGAGCGACGGAAGCGTGCAGCGCTACAAAATATGCTT
GAGGGAGGAGTGTCAACATATGTATAA

Synonyms

Publications