jgi.p|Nanoce1779_2|579130, mRNA_2116 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|579130
Unique NamemRNA_2116
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1563
Alignment locationscaffold_4:844075..845765 -

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Properties
Property NameValue
TranscriptId579216
TrackFilteredModels2
ProteinId579130
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_4supercontigscaffold_4:844075..845765 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|579130gene_2116Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|579130mRNA_2116-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2116CDS_2116Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2116 ID=mRNA_2116|Name=jgi.p|Nanoce1779_2|579130|organism=Nannochloropsis oceanica|type=mRNA|length=1563bp
ACCAATGCTATAATATCCTTTTGCTGAAGCTTAACTCAATCCTGCTGTGG
TCCATGTAGGCTTACAGCGCAAACGCACTCATTTTGCTCATTGTCGTCCC
CCCTGGCCCCCACCCCCAAGGCAGACCAAGAAGCACGCAGGTGTACCTTC
GACTAGACGAGGGGCGAACCGACATCCTGGAAGTTTTAAGACGTAACAGC
AGCACACAGCACCTGTCGGCTATGCCATCATTACTCATGACCCTCCTGCA
CCTTACGGTGCTCATGACCGTCATGGCCCTCCCTATGGGTTGCACCTTTA
TTTCCTCGTTGCCAGCCAATCATGTACATTTGCGCACTCTATCAGCGGGC
ACAGTCGCTCGACGACCGGGAGCAGGCCTGTCTCTTCAGTCTGATTTTTG
TCTCGTCATCACGGGGGATGCACGACTCCGCCATTTACGCTTACTGGCGG
AGGAAACATCGGAGGATAGCAGTGCTGGAGAGGAGGCTGGCGGGGCACGA
CGCAAGCAAGTAATGAGGAAAAAGCGCGTGCGCAAGGACCGACAAGCAAT
TGGGGGCCGTGCCTCATCTACAGAGGCGGATGAGGCCCCAGTGCCCCTAG
ACCCACTCCTAAAGAAAGCCCAAGAAGATATCATGAGCAGAGAATTCGAT
CGAACGCTGGTGATTGAGGAGTTTTCCGCCCCCCGTGTCGTTGACCGTAG
AAGGCCGACCCCTGCTGAGGTGGCTGCGGCAGTGGCTGCTAATGCTGCAG
CTGACGACGATAATGACGACGATGAAGATGAAGAAGGAGAGGAGGGCGAG
ATGAAAGAAGGAAATGCGGTTCGCGGGCGAAAGAAGATACAATTTCAAGG
TGTGGCGGCGGAAGCCGCGGCTGCTGCCGTGAAGGAGTGGACGGGCGTGC
CGGAGAACCTGAGGTACGATCCGACTTTTGAATTGCCTATCCCTTCGGAG
ACGGTGGTGTCACTCTCGGATATAGCCACCAAATTCGACGATGCCATTAT
GACTGATCAAGCAAAGTCTTTGCCGACTCTGGCGGAGCTGGGCAAGAAGG
CAAAGGGGTCGATTTTGAAGCGGCAACAAGAGGAGGAGGAGAAGGTGGCA
AAGGAGCTAGAGCCTCTTGATGATTACGATTTAAGCGCAGCCATTTTGGG
AGAGGGTCGACCTGTCTTAGGCATTGGTTTACCTTATTTGCAGAGTTGCC
ACACTGTTGTTATTCTTGTGACGTTGCTTTGTGCGTTTGTGGAGTTCCCT
GGGTTTCCCTTGACCAATTTTCCTTATGAGCTGCGGGAGTTCCTGAAGCA
GGGGTTGATAGTGATCTATGCTATTAATGCCGTTTTGGCGTGGGATAGCA
TCAAGGAGGCAAAGAAACGGGAGCAGAGTGTATTCTTTTGGGCGCTGAAG
TGCTTTGTGCTGGGTGCGTTGGCACATAATGAACTGTTATCGATCAGGGT
AAAGCCCCAAGCATCCAGCTGACCAGTACTAACACAAACATGAAAGCATA
AGGGGCAGCAGGCACCGACCGGCAGAAGAGTTATCAAATGAAAAGTGCGA
CGTAGTTAGAAAA
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protein sequence of jgi.p|Nanoce1779_2|579130

>mRNA_2116-protein ID=mRNA_2116-protein|Name=jgi.p|Nanoce1779_2|579130|organism=Nannochloropsis oceanica|type=polypeptide|length=417bp
MPSLLMTLLHLTVLMTVMALPMGCTFISSLPANHVHLRTLSAGTVARRPG
AGLSLQSDFCLVITGDARLRHLRLLAEETSEDSSAGEEAGGARRKQVMRK
KRVRKDRQAIGGRASSTEADEAPVPLDPLLKKAQEDIMSREFDRTLVIEE
FSAPRVVDRRRPTPAEVAAAVAANAAADDDNDDDEDEEGEEGEMKEGNAV
RGRKKIQFQGVAAEAAAAAVKEWTGVPENLRYDPTFELPIPSETVVSLSD
IATKFDDAIMTDQAKSLPTLAELGKKAKGSILKRQQEEEEKVAKELEPLD
DYDLSAAILGEGRPVLGIGLPYLQSCHTVVILVTLLCAFVEFPGFPLTNF
PYELREFLKQGLIVIYAINAVLAWDSIKEAKKREQSVFFWALKCFVLGAL
AHNELLSIRVKPQASS*
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mRNA from alignment at scaffold_4:844075..845765-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2116 ID=mRNA_2116|Name=jgi.p|Nanoce1779_2|579130|organism=Nannochloropsis oceanica|type=mRNA|length=1691bp|location=Sequence derived from alignment at scaffold_4:844075..845765- (Nannochloropsis oceanica)
ACCAATGCTATAATATCCTTTTGCTGAAGCTTAACTCAATCCTGCTGTGG
TCCATGTAGGCTTACAGCGCAAACGCACTCATTTTGCTCATTGTCGTCCC
CCCTGGCCCCCACCCCCAAGGCAGACCAAGAAGCACGCAGGTGTACCTTC
GACTAGACGAGGGGCGAACCGACATCCTGGAAGTTTTAAGACGTAACAGC
AGCACACAGGTAAGGTAGAAAGGATCATCACCATTTCTATATTTCCTTCG
GATGCCTATCCTTCTCGTTCCTCTCCGGGAGGACTGCAACTGGGAAGCTA
ACTGCATCTAAACCCCCCTTCAACTCCCACTCAACAGCACCTGTCGGCTA
TGCCATCATTACTCATGACCCTCCTGCACCTTACGGTGCTCATGACCGTC
ATGGCCCTCCCTATGGGTTGCACCTTTATTTCCTCGTTGCCAGCCAATCA
TGTACATTTGCGCACTCTATCAGCGGGCACAGTCGCTCGACGACCGGGAG
CAGGCCTGTCTCTTCAGTCTGATTTTTGTCTCGTCATCACGGGGGATGCA
CGACTCCGCCATTTACGCTTACTGGCGGAGGAAACATCGGAGGATAGCAG
TGCTGGAGAGGAGGCTGGCGGGGCACGACGCAAGCAAGTAATGAGGAAAA
AGCGCGTGCGCAAGGACCGACAAGCAATTGGGGGCCGTGCCTCATCTACA
GAGGCGGATGAGGCCCCAGTGCCCCTAGACCCACTCCTAAAGAAAGCCCA
AGAAGATATCATGAGCAGAGAATTCGATCGAACGCTGGTGATTGAGGAGT
TTTCCGCCCCCCGTGTCGTTGACCGTAGAAGGCCGACCCCTGCTGAGGTG
GCTGCGGCAGTGGCTGCTAATGCTGCAGCTGACGACGATAATGACGACGA
TGAAGATGAAGAAGGAGAGGAGGGCGAGATGAAAGAAGGAAATGCGGTTC
GCGGGCGAAAGAAGATACAATTTCAAGGTGTGGCGGCGGAAGCCGCGGCT
GCTGCCGTGAAGGAGTGGACGGGCGTGCCGGAGAACCTGAGGTACGATCC
GACTTTTGAATTGCCTATCCCTTCGGAGACGGTGGTGTCACTCTCGGATA
TAGCCACCAAATTCGACGATGCCATTATGACTGATCAAGCAAAGTCTTTG
CCGACTCTGGCGGAGCTGGGCAAGAAGGCAAAGGGGTCGATTTTGAAGCG
GCAACAAGAGGAGGAGGAGAAGGTGGCAAAGGAGCTAGAGCCTCTTGATG
ATTACGATTTAAGCGCAGCCATTTTGGGAGAGGGTCGACCTGTCTTAGGC
ATTGGTTTACCTTATTTGCAGAGTTGCCACACTGTTGTTATTCTTGTGAC
GTTGCTTTGTGCGTTTGTGGAGTTCCCTGGGTTTCCCTTGACCAATTTTC
CTTATGAGCTGCGGGAGTTCCTGAAGCAGGGGTTGATAGTGATCTATGCT
ATTAATGCCGTTTTGGCGTGGGATAGCATCAAGGAGGCAAAGAAACGGGA
GCAGAGTGTATTCTTTTGGGCGCTGAAGTGCTTTGTGCTGGGTGCGTTGG
CACATAATGAACTGTTATCGATCAGGGTAAAGCCCCAAGCATCCAGCTGA
CCAGTACTAACACAAACATGAAAGCATAAGGGGCAGCAGGCACCGACCGG
CAGAAGAGTTATCAAATGAAAAGTGCGACGTAGTTAGAAAA
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Coding sequence (CDS) from alignment at scaffold_4:844075..845765-

>mRNA_2116 ID=mRNA_2116|Name=jgi.p|Nanoce1779_2|579130|organism=Nannochloropsis oceanica|type=CDS|length=1251bp|location=Sequence derived from alignment at scaffold_4:844075..845765- (Nannochloropsis oceanica)
ATGCCATCATTACTCATGACCCTCCTGCACCTTACGGTGCTCATGACCGT
CATGGCCCTCCCTATGGGTTGCACCTTTATTTCCTCGTTGCCAGCCAATC
ATGTACATTTGCGCACTCTATCAGCGGGCACAGTCGCTCGACGACCGGGA
GCAGGCCTGTCTCTTCAGTCTGATTTTTGTCTCGTCATCACGGGGGATGC
ACGACTCCGCCATTTACGCTTACTGGCGGAGGAAACATCGGAGGATAGCA
GTGCTGGAGAGGAGGCTGGCGGGGCACGACGCAAGCAAGTAATGAGGAAA
AAGCGCGTGCGCAAGGACCGACAAGCAATTGGGGGCCGTGCCTCATCTAC
AGAGGCGGATGAGGCCCCAGTGCCCCTAGACCCACTCCTAAAGAAAGCCC
AAGAAGATATCATGAGCAGAGAATTCGATCGAACGCTGGTGATTGAGGAG
TTTTCCGCCCCCCGTGTCGTTGACCGTAGAAGGCCGACCCCTGCTGAGGT
GGCTGCGGCAGTGGCTGCTAATGCTGCAGCTGACGACGATAATGACGACG
ATGAAGATGAAGAAGGAGAGGAGGGCGAGATGAAAGAAGGAAATGCGGTT
CGCGGGCGAAAGAAGATACAATTTCAAGGTGTGGCGGCGGAAGCCGCGGC
TGCTGCCGTGAAGGAGTGGACGGGCGTGCCGGAGAACCTGAGGTACGATC
CGACTTTTGAATTGCCTATCCCTTCGGAGACGGTGGTGTCACTCTCGGAT
ATAGCCACCAAATTCGACGATGCCATTATGACTGATCAAGCAAAGTCTTT
GCCGACTCTGGCGGAGCTGGGCAAGAAGGCAAAGGGGTCGATTTTGAAGC
GGCAACAAGAGGAGGAGGAGAAGGTGGCAAAGGAGCTAGAGCCTCTTGAT
GATTACGATTTAAGCGCAGCCATTTTGGGAGAGGGTCGACCTGTCTTAGG
CATTGGTTTACCTTATTTGCAGAGTTGCCACACTGTTGTTATTCTTGTGA
CGTTGCTTTGTGCGTTTGTGGAGTTCCCTGGGTTTCCCTTGACCAATTTT
CCTTATGAGCTGCGGGAGTTCCTGAAGCAGGGGTTGATAGTGATCTATGC
TATTAATGCCGTTTTGGCGTGGGATAGCATCAAGGAGGCAAAGAAACGGG
AGCAGAGTGTATTCTTTTGGGCGCTGAAGTGCTTTGTGCTGGGTGCGTTG
GCACATAATGAACTGTTATCGATCAGGGTAAAGCCCCAAGCATCCAGCTG
A
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Synonyms
Publications