jgi.p|Nanoce1779_2|307983, mRNA_10031 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|307983
Unique Name	mRNA_10031
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1854
Alignment location	scaffold_42:93160..95433 -

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Properties


Property Name	Value
TranscriptId	308069
Track	FilteredModels2
ProteinId	307983

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_42	supercontig	scaffold_42:93160..95433 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|307983	gene_10031	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|307983	mRNA_10031-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_10031	CDS_10031	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_42:93160..95433-
coding sequence from alignment at scaffold_42:93160..95433-

mRNA sequence

>mRNA_10031 ID=mRNA_10031|Name=jgi.p|Nanoce1779_2|307983|organism=Nannochloropsis oceanica|type=mRNA|length=1854bp
TGCCGGTGCTAGTCGTCCCGTACGTGTGTGGCATCGTGCGGGACGTGCGG
TGGGCTGTCATATGCAGGAGGGTGAAATATCATGATGATACCACTCATTC
TACATCGGCAACGTTCGTCTTCCAGACCCTGACCTCCCCGCGAAATGGCA
ACCTCACCACCAGTGCCGCACACTCTCCTTGAGCTCCTCCAGCAGCTCGA
AGGCCACTTACACGCGCTCTTGTCGCCCCAGCCAGCGGTAAATAAGGGAA
ATGGTGACAGCCATGATAAGTGGCTGCAACACTTCCAATTGGCTCCTGAG
GCATGGGCCGTATGCGTGGAGGGCTTCCGTCTCACCCTCGCAAGCCATCA
GCACCAGTCTCTGCAAGAGCAGCAGCAGCTGCACCACCAACACCATCACC
ACCACCGTCTTTCGCTTTTTCTCGCACAGACCCTTGTCCTGAAAGCCCGC
CGATCTTGGCGAGATGGTGGGTTGGCTGACCACCAAATACAGGAGCTTGC
AGCATTACCTTTCCAAATCCTCGCCCTTCAGCCTTCCCTACCTCAGCATT
ACGACCTCATCGTTACCCAACTATGCCTCGGGCTTTGTGCCGCTGCCTTG
ACATGTCCACGCATCACACCCGAAAGTCTTTTTGCTCACCTCATGGCATT
GGCCTCTGAGGCAGGAAAAGGGGAAAAGGAAGAGGAGGGGAGCGATACTG
TGTGTATGCTCCGTCTAAAAGTCCTTGAACTTTTGCCTGAAGAGGCCCAA
AGACGACGCACCCTCTCCCTTCCCGCTGAACGGCGATCTGCCATCCTTCA
TAACCTGTGCCACGGAGGACTTGAGGGCCCTGCTGGGTACGCCCTTGCAT
ATCTCCTTTCCTCCTCCACCTCCTCCACCTCTTCCTCCTCCTCCTCCTCT
TCCTTCCAGCCCTCGTCCTCGTGGTCCCTTCCTCACTCCTCCCTCCGTGC
GGTAGGGGCATGGTTGGAACTGAAAACTGTGTCGTGGAACGATATTTTGA
AGCCATTGGTGGTCCCGCACCTCACGGAAATAGTGCTGAGGGAATGTCAG
GGACGGAGGGAGGGAGGGAAGGAGGGAGGGCTGGGAGCATCGGCACTGGA
TCTTTTGACTATCATTGTGACGGCAGCACCACCTGAAGGACCACCGTCCC
TCTTGAAGGAGGAGGAGCAGCAGCAGTGCCTGCGGCCGGGGCAGCAGAGC
GTGGAGGTAGGCATGATGCTGCTGCCGTTGCTTCGGAGTGTTTGGGTGTC
GGTGGAGGGGGAAGGGCTGCCTGCCCTTGAGTCTTCGGTTGGTCGGGCTT
TCCTGGGACTGGTGGTAGCAGTGGGAAAGGCAGGGCTATTGGAGATGAGG
AGGAGGAAGGGGGGGAGCGACCGCAGCAGCTTGGCCATTTCCACACGCTG
CTGGTGGAGAAGAGGTTCTTCCTCTTCAGAGAGATCCCATGGCAATCCTG
ACCCCCCTCCTCCTCACCCTTGAACACGCGCCTCTGGAGCTGGTTTTGCT
GACCTTCGAGTTTTGGAATCACCTCGGCTGCAGCAGTTGTACGACGAGCA
GCAGCAGCAGCAGCGGCAGCAGCAACAGTGTCGGCAGTAACGACACGCCC
TCTCCACCTTTGGCTTCTACCACAAGAGAAGACCAAACACTTTCCGCCCC
TGCCTCCCTCCTCCTCATCCAGCACCATGCCCTCCGTCAAGCCCTCCCTC
GGCTCCTCCACCGCACTGCCTTCCCCCCCTCCTATCCCTCATTCTCCTTG
ACTGCCCGTGAAGCCCTCCTAGAATTTCGAGAGGAGGCGCGAGACGTCCT
GCGTGCCTGGGTTCTGGTCCCCTCCTCCATCCCGCCCTCCCCCCCTTCCT
CCTT

protein sequence of jgi.p|Nanoce1779_2|307983

>mRNA_10031-protein ID=mRNA_10031-protein|Name=jgi.p|Nanoce1779_2|307983|organism=Nannochloropsis oceanica|type=polypeptide|length=443bp
MATSPPVPHTLLELLQQLEGHLHALLSPQPAVNKGNGDSHDKWLQHFQLA
PEAWAVCVEGFRLTLASHQHQSLQEQQQLHHQHHHHHRLSLFLAQTLVLK
ARRSWRDGGLADHQIQELAALPFQILALQPSLPQHYDLIVTQLCLGLCAA
ALTCPRITPESLFAHLMALASEAGKGEKEEEGSDTVCMLRLKVLELLPEE
AQRRRTLSLPAERRSAILHNLCHGGLEGPAGYALAYLLSSSTSSTSSSSS
SSSFQPSSSWSLPHSSLRAVGAWLELKTVSWNDILKPLVVPHLTEIVLRE
CQGRREGGKEGGLGASALDLLTIIVTAAPPEGPPSLLKEEEQQQCLRPGQ
QSVEVGMMLLPLLRSVWVSVEGEGLPALESSVGRAFLGLVVAVGKAGLLE
MRRRKGGSDRSSLAISTRCWWRRGSSSSERSHGNPDPPPPHP*

mRNA from alignment at scaffold_42:93160..95433-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_10031 ID=mRNA_10031|Name=jgi.p|Nanoce1779_2|307983|organism=Nannochloropsis oceanica|type=mRNA|length=2274bp|location=Sequence derived from alignment at scaffold_42:93160..95433- (Nannochloropsis oceanica)
TGCCGGTGCTAGTCGTCCCGTACGTGTGTGGCATCGTGCGGGACGTGCGG
TGGGCTGTCATATGCAGGAGGGTAGGGGGCAGAGGGAGGAAGATAGTTAG
TGGCGGAGTGGAAGATGACCACGCCATTTTTGCTGTGCATGCGCAATTCC
CCCTCCTTCCCCTCCACCTTTTTCTTGTCATCCTCCCCCAGGGCAGCCTC
CCTCCGCTGTACATGTTCGCAACCGCATTAAGTGCCTGCCGTCGCTCGCC
ACGTAAGGCGGAGACTGCTCTTATCATCACATGTCGCCAGCGACGCCCCA
CCACATCGAACCTGATTCCCTGATTCTCCCCCATCCTTTTTCATGGTCCA
TCCCACACTACAGTACGACCGAAATGTATACATCACTCGCACACACACAC
AGGTGAAATATCATGATGATACCACTCATTCTACATCGGCAACGTTCGTC
TTCCAGACCCTGACCTCCCCGCGAAATGGCAACCTCACCACCAGTGCCGC
ACACTCTCCTTGAGCTCCTCCAGCAGCTCGAAGGCCACTTACACGCGCTC
TTGTCGCCCCAGCCAGCGGTAAATAAGGGAAATGGTGACAGCCATGATAA
GTGGCTGCAACACTTCCAATTGGCTCCTGAGGCATGGGCCGTATGCGTGG
AGGGCTTCCGTCTCACCCTCGCAAGCCATCAGCACCAGTCTCTGCAAGAG
CAGCAGCAGCTGCACCACCAACACCATCACCACCACCGTCTTTCGCTTTT
TCTCGCACAGACCCTTGTCCTGAAAGCCCGCCGATCTTGGCGAGATGGTG
GGTTGGCTGACCACCAAATACAGGAGCTTGCAGCATTACCTTTCCAAATC
CTCGCCCTTCAGCCTTCCCTACCTCAGCATTACGACCTCATCGTTACCCA
ACTATGCCTCGGGCTTTGTGCCGCTGCCTTGACATGTCCACGCATCACAC
CCGAAAGTCTTTTTGCTCACCTCATGGCATTGGCCTCTGAGGCAGGAAAA
GGGGAAAAGGAAGAGGAGGGGAGCGATACTGTGTGTATGCTCCGTCTAAA
AGTCCTTGAACTTTTGCCTGAAGAGGCCCAAAGACGACGCACCCTCTCCC
TTCCCGCTGAACGGCGATCTGCCATCCTTCATAACCTGTGCCACGGAGGA
CTTGAGGGCCCTGCTGGGTACGCCCTTGCATATCTCCTTTCCTCCTCCAC
CTCCTCCACCTCTTCCTCCTCCTCCTCCTCTTCCTTCCAGCCCTCGTCCT
CGTGGTCCCTTCCTCACTCCTCCCTCCGTGCGGTAGGGGCATGGTTGGAA
CTGAAAACTGTGTCGTGGAACGATATTTTGAAGCCATTGGTGGTCCCGCA
CCTCACGGAAATAGTGCTGAGGGAATGTCAGGGACGGAGGGAGGGAGGGA
AGGAGGGAGGGCTGGGAGCATCGGCACTGGATCTTTTGACTATCATTGTG
ACGGCAGCACCACCTGAAGGACCACCGTCCCTCTTGAAGGAGGAGGAGCA
GCAGCAGTGCCTGCGGCCGGGGCAGCAGAGCGTGGAGGTAGGCATGATGC
TGCTGCCGTTGCTTCGGAGTGTTTGGGTGTCGGTGGAGGGGGAAGGGCTG
CCTGCCCTTGAGTCTTCGGTTGGTCGGGCTTTCCTGGGACTGGTGGTAGC
AGTGGGAAAGGCAGGGCTATTGGAGATGGAGGATGGAGAGGACGAGGACG
ACGGGGAGGGAGGGGAGCGGGAGACGCGAAAGTGGGGCGGTGGGGAAGGG
AGGAGGCGGAGAGGAGGAGGAGGAGGAAGGGGGGGAGCGACCGCAGCAGC
TTGGCCATTTCCACACGCTGCTGGTGGAGAAGAGGTTCTTCCTCTTCAGA
GAGATCCCATGGCAATCCTGACCCCCCTCCTCCTCACCCTTGAACACGCG
CCTCTGGAGCTGGTTTTGCTGACCTTCGAGTTTTGGAATCACCTCGGCTG
CAGCAGTTGTACGACGAGCAGCAGCAGCAGCAGCGGCAGCAGCAACAGTG
TCGGCAGTAACGACACGCCCTCTCCACCTTTGGCTTCTACCACAAGAGAA
GACCAAACACTTTCCGCCCCTGCCTCCCTCCTCCTCATCCAGCACCATGC
CCTCCGTCAAGCCCTCCCTCGGCTCCTCCACCGCACTGCCTTCCCCCCCT
CCTATCCCTCATTCTCCTTGACTGCCCGTGAAGCCCTCCTAGAATTTCGA
GAGGAGGCGCGAGACGTCCTGCGTGCCTGGGTTCTGGTCCCCTCCTCCAT
CCCGCCCTCCCCCCCTTCCTCCTT

Coding sequence (CDS) from alignment at scaffold_42:93160..95433-

>mRNA_10031 ID=mRNA_10031|Name=jgi.p|Nanoce1779_2|307983|organism=Nannochloropsis oceanica|type=CDS|length=2658bp|location=Sequence derived from alignment at scaffold_42:93160..95433- (Nannochloropsis oceanica)
GAGGAGGAGGAAGGGGGGGAGCGACCGCAGCAGCTTGGCCATTTCCACAC
GCTGCTGGTGGAGAAGAGGTTCTTCCTCTTCAGAGAGATCCCATGGCAAT
CCTGACCCCCCTCCTCCTCACCCTTGAATGGCAACCTCACCACCAGTGCC
GCACACTCTCCTTGAGCTCCTCCAGCAGCTCGAAGGCCACTTACACGCGC
TCTTGTCGCCCCAGCCAGCGGTAAATAAGGGAAATGGTGACAGCCATGAT
AAGTGGCTGCAACACTTCCAATTGGCTCCTGAGGCATGGGCCGTATGCGT
GGAGGGCTTCCGTCTCACCCTCGCAAGCCATCAGCACCAGTCTCTGCAAG
AGCAGCAGCAGCTGCACCACCAACACCATCACCACCACCGTCTTTCGCTT
TTTCTCGCACAGACCCTTGTCCTGAAAGCCCGCCGATCTTGGCGAGATGG
TGGGTTGGCTGACCACCAAATACAGGAGCTTGCAGCATTACCTTTCCAAA
TCCTCGCCCTTCAGCCTTCCCTACCTCAGCATTACGACCTCATCGTTACC
CAACTATGCCTCGGGCTTTGTGCCGCTGCCTTGACATGTCCACGCATCAC
ACCCGAAAGTCTTTTTGCTCACCTCATGGCATTGGCCTCTGAGGCAGGAA
AAGGGGAAAAGGAAGAGGAGGGGAGCGATACTGTGTGTATGCTCCGTCTA
AAAGTCCTTGAACTTTTGCCTGAAGAGGCCCAAAGACGACGCACCCTCTC
CCTTCCCGCTGAACGGCGATCTGCCATCCTTCATAACCTGTGCCACGGAG
GACTTGAGGGCCCTGCTGGGTACGCCCTTGCATATCTCCTTTCCTCCTCC
ACCTCCTCCACCTCTTCCTCCTCCTCCTCCTCTTCCTTCCAGCCCTCGTC
CTCGTGGTCCCTTCCTCACTCCTCCCTCCGTGCGGTAGGGGCATGGTTGG
AACTGAAAACTGTGTCGTGGAACGATATTTTGAAGCCATTGGTGGTCCCG
CACCTCACGGAAATAGTGCTGAGGGAATGTCAGGGACGGAGGGAGGGAGG
GAAGGAGGGAGGGCTGGGAGCATCGGCACTGGATCTTTTGACTATCATTG
TGACGGCAGCACCACCTGAAGGACCACCGTCCCTCTTGAAGGAGGAGGAG
CAGCAGCAGTGCCTGCGGCCGGGGCAGCAGAGCGTGGAGGTAGGCATGAT
GCTGCTGCCGTTGCTTCGGAGTGTTTGGGTGTCGGTGGAGGGGGAAGGGC
TGCCTGCCCTTGAGTCTTCGGTTGGTCGGGCTTTCCTGGGACTGGTGGTA
GCAGTGGGAAAGGCAGGGCTATTGGAGATGAGGAGGAGGAAGGGGGGGAG
CGACCGCAGCAGCTTGGCCATTTCCACACGCTGCTGGTGGAGAAGAGGTT
CTTCCTCTTCAGAGAGATCCCATGGCAATCCTGACCCCCCTCCTCCTCAC
CCTTGAATGGCAACCTCACCACCAGTGCCGCACACTCTCCTTGAGCTCCT
CCAGCAGCTCGAAGGCCACTTACACGCGCTCTTGTCGCCCCAGCCAGCGG
TAAATAAGGGAAATGGTGACAGCCATGATAAGTGGCTGCAACACTTCCAA
TTGGCTCCTGAGGCATGGGCCGTATGCGTGGAGGGCTTCCGTCTCACCCT
CGCAAGCCATCAGCACCAGTCTCTGCAAGAGCAGCAGCAGCTGCACCACC
AACACCATCACCACCACCGTCTTTCGCTTTTTCTCGCACAGACCCTTGTC
CTGAAAGCCCGCCGATCTTGGCGAGATGGTGGGTTGGCTGACCACCAAAT
ACAGGAGCTTGCAGCATTACCTTTCCAAATCCTCGCCCTTCAGCCTTCCC
TACCTCAGCATTACGACCTCATCGTTACCCAACTATGCCTCGGGCTTTGT
GCCGCTGCCTTGACATGTCCACGCATCACACCCGAAAGTCTTTTTGCTCA
CCTCATGGCATTGGCCTCTGAGGCAGGAAAAGGGGAAAAGGAAGAGGAGG
GGAGCGATACTGTGTGTATGCTCCGTCTAAAAGTCCTTGAACTTTTGCCT
GAAGAGGCCCAAAGACGACGCACCCTCTCCCTTCCCGCTGAACGGCGATC
TGCCATCCTTCATAACCTGTGCCACGGAGGACTTGAGGGCCCTGCTGGGT
ACGCCCTTGCATATCTCCTTTCCTCCTCCACCTCCTCCACCTCTTCCTCC
TCCTCCTCCTCTTCCTTCCAGCCCTCGTCCTCGTGGTCCCTTCCTCACTC
CTCCCTCCGTGCGGTAGGGGCATGGTTGGAACTGAAAACTGTGTCGTGGA
ACGATATTTTGAAGCCATTGGTGGTCCCGCACCTCACGGAAATAGTGCTG
AGGGAATGTCAGGGACGGAGGGAGGGAGGGAAGGAGGGAGGGCTGGGAGC
ATCGGCACTGGATCTTTTGACTATCATTGTGACGGCAGCACCACCTGAAG
GACCACCGTCCCTCTTGAAGGAGGAGGAGCAGCAGCAGTGCCTGCGGCCG
GGGCAGCAGAGCGTGGAGGTAGGCATGATGCTGCTGCCGTTGCTTCGGAG
TGTTTGGGTGTCGGTGGAGGGGGAAGGGCTGCCTGCCCTTGAGTCTTCGG
TTGGTCGGGCTTTCCTGGGACTGGTGGTAGCAGTGGGAAAGGCAGGGCTA
TTGGAGAT

Synonyms

Publications