jgi.p|Nanoce1779_2|533718, mRNA_9546 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|533718
Unique Name	mRNA_9546
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1575
Alignment location	scaffold_44:62398..64134 +

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Properties


Property Name	Value
TranscriptId	533804
Track	FilteredModels2
ProteinId	533718

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_44	supercontig	scaffold_44:62398..64134 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|533718	gene_9546	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|533718	mRNA_9546-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_9546	CDS_9546	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_44:62398..64134+
coding sequence from alignment at scaffold_44:62398..64134+

mRNA sequence

>mRNA_9546 ID=mRNA_9546|Name=jgi.p|Nanoce1779_2|533718|organism=Nannochloropsis oceanica|type=mRNA|length=1575bp
ATGAAGCCACTAGATGTCCCTGGCCACTATCAAAGGCGTTCCCTGCGCTT
GATTCCCGTACTGCTTGCTGTCTTCCTCCTGCTTGATGCACCCGCCAGCA
TAAATGCATTTGTTGTACGCGGTCTCCAGCAACAACGACCTCAACTCCAG
AGGCCTGTCTCCTCCCATGCACGTCTCCCTTCCACTTTCAAACCCGCCAT
CACCCAAGCCACCACTTCGACGGCAGCTGACTCCATTACCACTTCCACAA
CCATTGCGCCTGATGAGACCCTGGGCAAAATCTTGGCCGAGGCAGGCGCA
GGCTGCGGCAAGCTCGACCTCAAGAACGTGTTCCAAGCCCTCTTGACTGC
GCCAAACTCTCCTTTCCTGGACAAATACTGGCAACGTGAACCGTGCTACA
CGGCCACATCCATCCCTTGCTTGGCACAGGCGTGGACCATGGCAGATATG
GAAGATGCGATCGCTCGGGAATTCCTGTTGGCGGGCAGAGGGTTCTTCGA
AGAAGAAGGGAGCAAGATGAGCGGGGGTTGGAAAATGGCAACAGTCGGAG
AAGCCCGCGGATCATCGTTTGAAGATGCCAAGCTCCGACCAGAGGACGTC
CGAGCGGCCTTAGCCAAGCGAAGTGGAACGGTGGTTTTCAATAGTCGAAA
AAGATGGCGTGTCTACTCCCCCCCCGCTCCTGGGAAGAAAGCTCATGTGG
ATCCGTTTGCCCGCGGAAAGGACGCGGACAATCTTTCCCTCTCCGAGCTT
GGCACCCCCCTGGTAGACATGGTGTTAGGACCAGGCCAAATGCTCTACAT
GCCCGCCGGCTTCCCCCATACGACAGACACAGTCGTGGGAATGACCGGAG
AGAAGGACTCGTCGGTCCACTTGACTCTCGGCGTCGATACACACATCTGG
GGGTTGACCCACGCGACCCTCCGTGACTACTTCCTCTACCGCCTCAGCTA
CAATGGCGGCAGCAGCAGCGGTAGTGATATGATTCCTCCTCCCCCTCCTT
CTACCTTGGCTGACGCTTCCGCTTTCATTCAGTACCATAGTCAGTTGCCC
ATTGGGGCAAGGGAAGCACGTGCGGTGGCAGGAGGGGAGGGAGGGGCGGA
GAGGGTAGCACCAAAACGATGGTCGGAATTGAAGAAAGTGCTAGGGGACG
CCGTGATTGAAGAATTTAAACAAGTTATTTGCGCAGTGGATGATCAAGAT
GTCTTGGCGAGCTTGAAGGAAAAAGGCGGGAAGGAGGAAGAGGTGTTGAG
GCAGGTGGTGGCGAAGGTTATTGACCACCACCGCTCCTTGACAGCCGTGT
TTAGGTCTATGTATGTAGATGTGAAATTCGGCTTGACGGAGGTTCCGAGA
GACTTGTCGTGTCTTCGCTCCCAAGCGTACTATCAGAATATTGAAAATAC
CATGCAGGCATTGGTAGAGTGGGCGGCCCCCCCCTCCCTCCCTCCTTCCC
CTGCTGCTGCTGCTGCTGGAGCTGCTGGAGGAGGAGGGGGAGCGGGAGGG
AGTAAAGGGGGGTTTGGTGGTGGTGGTGGGAAGAAGCCGGCTGGTGGCAA
GGGTGGGGGAAAGAAGAAGAAGTAG

protein sequence of jgi.p|Nanoce1779_2|533718

>mRNA_9546-protein ID=mRNA_9546-protein|Name=jgi.p|Nanoce1779_2|533718|organism=Nannochloropsis oceanica|type=polypeptide|length=525bp
MKPLDVPGHYQRRSLRLIPVLLAVFLLLDAPASINAFVVRGLQQQRPQLQ
RPVSSHARLPSTFKPAITQATTSTAADSITTSTTIAPDETLGKILAEAGA
GCGKLDLKNVFQALLTAPNSPFLDKYWQREPCYTATSIPCLAQAWTMADM
EDAIAREFLLAGRGFFEEEGSKMSGGWKMATVGEARGSSFEDAKLRPEDV
RAALAKRSGTVVFNSRKRWRVYSPPAPGKKAHVDPFARGKDADNLSLSEL
GTPLVDMVLGPGQMLYMPAGFPHTTDTVVGMTGEKDSSVHLTLGVDTHIW
GLTHATLRDYFLYRLSYNGGSSSGSDMIPPPPPSTLADASAFIQYHSQLP
IGAREARAVAGGEGGAERVAPKRWSELKKVLGDAVIEEFKQVICAVDDQD
VLASLKEKGGKEEEVLRQVVAKVIDHHRSLTAVFRSMYVDVKFGLTEVPR
DLSCLRSQAYYQNIENTMQALVEWAAPPSLPPSPAAAAAGAAGGGGGAGG
SKGGFGGGGGKKPAGGKGGGKKKK*

mRNA from alignment at scaffold_44:62398..64134+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_9546 ID=mRNA_9546|Name=jgi.p|Nanoce1779_2|533718|organism=Nannochloropsis oceanica|type=mRNA|length=1737bp|location=Sequence derived from alignment at scaffold_44:62398..64134+ (Nannochloropsis oceanica)
ATGAAGCCACTAGATGTCCCTGGCCACTATCAAAGGCGTTCCCTGCGCTT
GATTCCCGTACTGCTTGCTGTCTTCCTCCTGCTTGATGCACCCGCCAGCA
TAAATGCATTTGTTGTACGCGGTCTCCAGCAACAACGACCTCAACTCCAG
AGGCCTGTCTCCTCCCATGCACGTCTCCCTTCCACTTTCAAACCCGCCAT
CACCCAAGCCACCACTTCGACGGCAGCTGACTCCATTACCACTTCCACAA
CCATTGCGCCTGATGAGACCCTGGGCAAAATCTTGGCCGAGGCAGGCGCA
GGCTGCGGCAAGCTCGACCTCAAGAACGTGTTCCAAGCCCTCTTGACTGC
GCCAAACTCTCCTTTCCTGGACAAATACTGGCAACGTGAACCGTGCTACA
CGGCCACATCCATCCCTTGCTTGGCACAGGCGTGGACCATGGCAGATATG
GAAGATGCGATCGCTCGGGAATTCCTGTTGGCGGGCAGAGGGTTCTTCGA
AGAAGAAGGGAGCAAGATGAGCGGGGGTTGGAAAATGGCAACAGTCGGAG
AAGCCCGCGGATCATCGTTTGAAGATGCCAAGCTCCGACCAGAGGACGTC
CGAGCGGCCTTAGCCAAGCGAAGTGGAACGGTGGTTTTCAATAGTGTCGG
TGGCTCCGTGGCGGCGCTGGCAGGTGTATGCCTAGATGCCGTCGAGACTT
TCCTACTCCCCGTCGCGCTCAACCTCTACCTCACTGCCCCAGGACAAGCC
ACTTCCGCGCCCCCGCACACGGACAAACAAGATGTCTTTGTCTTGCAAAC
GCAAGGTCGAAAAAGATGGCGTGTCTACTCCCCCCCCGCTCCTGGGAAGA
AAGCTCATGTGGATCCGTTTGCCCGCGGAAAGGACGCGGACAATCTTTCC
CTCTCCGAGCTTGGCACCCCCCTGGTAGACATGGTGTTAGGACCAGGCCA
AATGCTCTACATGCCCGCCGGCTTCCCCCATACGACAGACACAGTCGTGG
GAATGACCGGAGAGAAGGACTCGTCGGTCCACTTGACTCTCGGCGTCGAT
ACACACATCTGGGGGTTGACCCACGCGACCCTCCGTGACTACTTCCTCTA
CCGCCTCAGCTACAATGGCGGCAGCAGCAGCGGTAGTGATATGATTCCTC
CTCCCCCTCCTTCTACCTTGGCTGACGCTTCCGCTTTCATTCAGTACCAT
AGTCAGTTGCCCATTGGGGCAAGGGAAGCACGTGCGGTGGCAGGAGGGGA
GGGAGGGGCGGAGAGGGTAGCACCAAAACGATGGTCGGAATTGAAGAAAG
TGCTAGGGGACGCCGTGATTGAAGAATTTAAACAAGTTATTTGCGCAGTG
GATGATCAAGATGTCTTGGCGAGCTTGAAGGAAAAAGGCGGGAAGGAGGA
AGAGGTGTTGAGGCAGGTGGTGGCGAAGGTTATTGACCACCACCGCTCCT
TGACAGCCGTGTTTAGGTCTATGTATGTAGATGTGAAATTCGGCTTGACG
GAGGTTCCGAGAGACTTGTCGTGTCTTCGCTCCCAAGCGTACTATCAGAA
TATTGAAAATACCATGCAGGCATTGGTAGAGTGGGCGGCCCCCCCCTCCC
TCCCTCCTTCCCCTGCTGCTGCTGCTGCTGGAGCTGCTGGAGGAGGAGGG
GGAGCGGGAGGGAGTAAAGGGGGGTTTGGTGGTGGTGGTGGGAAGAAGCC
GGCTGGTGGCAAGGGTGGGGGAAAGAAGAAGAAGTAG

Coding sequence (CDS) from alignment at scaffold_44:62398..64134+

>mRNA_9546 ID=mRNA_9546|Name=jgi.p|Nanoce1779_2|533718|organism=Nannochloropsis oceanica|type=CDS|length=3150bp|location=Sequence derived from alignment at scaffold_44:62398..64134+ (Nannochloropsis oceanica)
ATGAAGCCACTAGATGTCCCTGGCCACTATCAAAGGCGTTCCCTGCGCTT
GATTCCCGTACTGCTTGCTGTCTTCCTCCTGCTTGATGCACCCGCCAGCA
TAAATGCATTTGTTGTACGCGGTCTCCAGCAACAACGACCTCAACTCCAG
AGGCCTGTCTCCTCCCATGCACGTCTCCCTTCCACTTTCAAACCCGCCAT
CACCCAAGCCACCACTTCGACGGCAGCTGACTCCATTACCACTTCCACAA
CCATTGCGCCTGATGAGACCCTGGGCAAAATCTTGGCCGAGGCAGGCGCA
GGCTGCGGCAAGCTCGACCTCAAGAACGTGTTCCAAGCCCTCTTGACTGC
GCCAAACTCTCCTTTCCTGGACAAATACTGGCAACGTGAACCGTGCTACA
CGGCCACATCCATCCCTTGCTTGGCACAGGCGTGGACCATGGCAGATATG
GAAGATGCGATCGCTCGGGAATTCCTGTTGGCGGGCAGAGGGTTCTTCGA
AGAAGAAGGGAGCAAGATGAGCGGGGGTTGGAAAATGGCAACAGTCGGAG
AAGCCCGCGGATCATCGTTTGAAGATGCCAAGCTCCGACCAGAGGACGTC
CGAGCGGCCTTAGCCAAGCGAAGTGGAACGGTGGTTTTCAATAGTCGAAA
AAGATGGCGTGTCTACTCCCCCCCCGCTCCTGGGAAGAAAGCTCATGTGG
ATCCGTTTGCCCGCGGAAAGGACGCGGACAATCTTTCCCTCTCCGAGCTT
GGCACCCCCCTGGTAGACATGGTGTTAGGACCAGGCCAAATGCTCTACAT
GCCCGCCGGCTTCCCCCATACGACAGACACAGTCGTGGGAATGACCGGAG
AGAAGGACTCGTCGGTCCACTTGACTCTCGGCGTCGATACACACATCTGG
GGGTTGACCCACGCGACCCTCCGTGACTACTTCCTCTACCGCCTCAGCTA
CAATGGCGGCAGCAGCAGCGGTAGTGATATGATTCCTCCTCCCCCTCCTT
CTACCTTGGCTGACGCTTCCGCTTTCATTCAGTACCATAGTCAGTTGCCC
ATTGGGGCAAGGGAAGCACGTGCGGTGGCAGGAGGGGAGGGAGGGGCGGA
GAGGGTAGCACCAAAACGATGGTCGGAATTGAAGAAAGTGCTAGGGGACG
CCGTGATTGAAGAATTTAAACAAGTTATTTGCGCAGTGGATGATCAAGAT
GTCTTGGCGAGCTTGAAGGAAAAAGGCGGGAAGGAGGAAGAGGTGTTGAG
GCAGGTGGTGGCGAAGGTTATTGACCACCACCGCTCCTTGACAGCCGTGT
TTAGGTCTATGTATGTAGATGTGAAATTCGGCTTGACGGAGGTTCCGAGA
GACTTGTCGTGTCTTCGCTCCCAAGCGTACTATCAGAATATTGAAAATAC
CATGCAGGCATTGGTAGAGTGGGCGGCCCCCCCCTCCCTCCCTCCTTCCC
CTGCTGCTGCTGCTGCTGGAGCTGCTGGAGGAGGAGGGGGAGCGGGAGGG
AGTAAAGGGGGGTTTGGTGGTGGTGGTGGGAAGAAGCCGGCTGGTGGCAA
GGGTGGGGGAAAGAAGAAGAAGTAGATGAAGCCACTAGATGTCCCTGGCC
ACTATCAAAGGCGTTCCCTGCGCTTGATTCCCGTACTGCTTGCTGTCTTC
CTCCTGCTTGATGCACCCGCCAGCATAAATGCATTTGTTGTACGCGGTCT
CCAGCAACAACGACCTCAACTCCAGAGGCCTGTCTCCTCCCATGCACGTC
TCCCTTCCACTTTCAAACCCGCCATCACCCAAGCCACCACTTCGACGGCA
GCTGACTCCATTACCACTTCCACAACCATTGCGCCTGATGAGACCCTGGG
CAAAATCTTGGCCGAGGCAGGCGCAGGCTGCGGCAAGCTCGACCTCAAGA
ACGTGTTCCAAGCCCTCTTGACTGCGCCAAACTCTCCTTTCCTGGACAAA
TACTGGCAACGTGAACCGTGCTACACGGCCACATCCATCCCTTGCTTGGC
ACAGGCGTGGACCATGGCAGATATGGAAGATGCGATCGCTCGGGAATTCC
TGTTGGCGGGCAGAGGGTTCTTCGAAGAAGAAGGGAGCAAGATGAGCGGG
GGTTGGAAAATGGCAACAGTCGGAGAAGCCCGCGGATCATCGTTTGAAGA
TGCCAAGCTCCGACCAGAGGACGTCCGAGCGGCCTTAGCCAAGCGAAGTG
GAACGGTGGTTTTCAATAGTCGAAAAAGATGGCGTGTCTACTCCCCCCCC
GCTCCTGGGAAGAAAGCTCATGTGGATCCGTTTGCCCGCGGAAAGGACGC
GGACAATCTTTCCCTCTCCGAGCTTGGCACCCCCCTGGTAGACATGGTGT
TAGGACCAGGCCAAATGCTCTACATGCCCGCCGGCTTCCCCCATACGACA
GACACAGTCGTGGGAATGACCGGAGAGAAGGACTCGTCGGTCCACTTGAC
TCTCGGCGTCGATACACACATCTGGGGGTTGACCCACGCGACCCTCCGTG
ACTACTTCCTCTACCGCCTCAGCTACAATGGCGGCAGCAGCAGCGGTAGT
GATATGATTCCTCCTCCCCCTCCTTCTACCTTGGCTGACGCTTCCGCTTT
CATTCAGTACCATAGTCAGTTGCCCATTGGGGCAAGGGAAGCACGTGCGG
TGGCAGGAGGGGAGGGAGGGGCGGAGAGGGTAGCACCAAAACGATGGTCG
GAATTGAAGAAAGTGCTAGGGGACGCCGTGATTGAAGAATTTAAACAAGT
TATTTGCGCAGTGGATGATCAAGATGTCTTGGCGAGCTTGAAGGAAAAAG
GCGGGAAGGAGGAAGAGGTGTTGAGGCAGGTGGTGGCGAAGGTTATTGAC
CACCACCGCTCCTTGACAGCCGTGTTTAGGTCTATGTATGTAGATGTGAA
ATTCGGCTTGACGGAGGTTCCGAGAGACTTGTCGTGTCTTCGCTCCCAAG
CGTACTATCAGAATATTGAAAATACCATGCAGGCATTGGTAGAGTGGGCG
GCCCCCCCCTCCCTCCCTCCTTCCCCTGCTGCTGCTGCTGCTGGAGCTGC
TGGAGGAGGAGGGGGAGCGGGAGGGAGTAAAGGGGGGTTTGGTGGTGGTG
GTGGGAAGAAGCCGGCTGGTGGCAAGGGTGGGGGAAAGAAGAAGAAGTAG

Synonyms

Publications