jgi.p|Nanoce1779_2|533903, mRNA_9997 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|533903
Unique NamemRNA_9997
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length657
Alignment locationscaffold_49:130971..131771 +

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Properties
Property NameValue
TranscriptId533989
TrackFilteredModels2
ProteinId533903
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_49supercontigscaffold_49:130971..131771 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|533903gene_9997Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|533903mRNA_9997-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9997CDS_9997Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9997 ID=mRNA_9997|Name=jgi.p|Nanoce1779_2|533903|organism=Nannochloropsis oceanica|type=mRNA|length=657bp
ATGAGGAGGCCAGAGGCACCTCCGGTGTTGGTGGGCTCGGTGGAAGCAAG
CACACATGAGTTTGCCGAAGTTGGTTTCAGCCCCTGTCTGTCCGAGGCAA
GGAAAGGCAGCAAGCTCTACATTACGGGTATGATGGTTTCGGAAGCCTTT
CGCAGACAAGGAGTCGCCGCCTCTCTCCTTCGTGCCGTTGACACCCATGC
TTATAAAAATAACTTGAACTATATCTGTTTGTATGTCGAGGGCGGCAATG
AATCGGCGCTGCGGTTGTATGAGAAGAATGGGTACAGTGTGGTTGCATTC
TCACCCCAAGCAGAAAGCTTTGCCGCGGCGATTGGGCTGTACAAAGGGCC
TTTTTCATCACGTCGATATTCATTTGCGTACAAACGGTTGGCGGTGGGGT
TTGGGACTGCTGGTGGTGCTGCTGGTGCTGGTGCTGCTGCTGTCGGTGCT
GCTGCTGCCGTTGGTGCAGGTGATAGGGAGCCCGTGTCCGGGCGTGGTAG
ATTTGTTGTGGGTAGTGTTGGGGTTTTGCAGCATCAGCAGCAGCAGCAAC
AACAACAGCAGCAGCCGCAGCCCCCGCAGCTGGAGGGGGAAAGCTTATTG
TCCGAACCAAACAAGCCGTTTCCGGCGCGGTCGCCATCCTTGGTGATGCC
TTTTTGA
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protein sequence of jgi.p|Nanoce1779_2|533903

>mRNA_9997-protein ID=mRNA_9997-protein|Name=jgi.p|Nanoce1779_2|533903|organism=Nannochloropsis oceanica|type=polypeptide|length=219bp
MRRPEAPPVLVGSVEASTHEFAEVGFSPCLSEARKGSKLYITGMMVSEAF
RRQGVAASLLRAVDTHAYKNNLNYICLYVEGGNESALRLYEKNGYSVVAF
SPQAESFAAAIGLYKGPFSSRRYSFAYKRLAVGFGTAGGAAGAGAAAVGA
AAAVGAGDREPVSGRGRFVVGSVGVLQHQQQQQQQQQQPQPPQLEGESLL
SEPNKPFPARSPSLVMPF*
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mRNA from alignment at scaffold_49:130971..131771+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9997 ID=mRNA_9997|Name=jgi.p|Nanoce1779_2|533903|organism=Nannochloropsis oceanica|type=mRNA|length=801bp|location=Sequence derived from alignment at scaffold_49:130971..131771+ (Nannochloropsis oceanica)
ATGAGGAGGCCAGAGGCACCTCCGGTGTTGGTGGGCTCGGTGGAAGCAAG
CACACATGAGTTTGCCGAAGTTGGTTTCAGCCCCTGTCTGTCCGAGGCAA
GGGTGAGGGAGAAAGAGGAGGAAGAGGAGGATCGGGAAGATGACTACTAT
GTTCATTGTCGGCCTTCATCTTGGACCACAACTCTCACCACTACCACCGG
TAGCAGCAGCAGCTGGGCATCGCCCTCCCCTCCCCTCCAAAGGGAGAAAG
GCAGCAAGCTCTACATTACGGGTATGATGGTTTCGGAAGCCTTTCGCAGA
CAAGGAGTCGCCGCCTCTCTCCTTCGTGCCGTTGACACCCATGCTTATAA
AAATAACTTGAACTATATCTGTTTGTATGTCGAGGGCGGCAATGAATCGG
CGCTGCGGTTGTATGAGAAGAATGGGTACAGTGTGGTTGCATTCTCACCC
CAAGCAGAAAGCTTTGCCGCGGCGATTGGGCTGTACAAAGGGCCTTTTTC
ATCACGTCGATATTCATTTGCGTACAAACGGTTGGCGGTGGGGTTTGGGA
CTGCTGGTGGTGCTGCTGGTGCTGGTGCTGCTGCTGTCGGTGCTGCTGCT
GCCGTTGGTGCAGGTGATAGGGAGCCCGTGTCCGGGCGTGGTAGATTTGT
TGTGGGTAGTGTTGGGGTTTTGCAGCATCAGCAGCAGCAGCAACAACAAC
AGCAGCAGCCGCAGCCCCCGCAGCTGGAGGGGGAAAGCTTATTGTCCGAA
CCAAACAAGCCGTTTCCGGCGCGGTCGCCATCCTTGGTGATGCCTTTTTG
A
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Coding sequence (CDS) from alignment at scaffold_49:130971..131771+

>mRNA_9997 ID=mRNA_9997|Name=jgi.p|Nanoce1779_2|533903|organism=Nannochloropsis oceanica|type=CDS|length=1314bp|location=Sequence derived from alignment at scaffold_49:130971..131771+ (Nannochloropsis oceanica)
ATGAGGAGGCCAGAGGCACCTCCGGTGTTGGTGGGCTCGGTGGAAGCAAG
CACACATGAGTTTGCCGAAGTTGGTTTCAGCCCCTGTCTGTCCGAGGCAA
GGAAAGGCAGCAAGCTCTACATTACGGGTATGATGGTTTCGGAAGCCTTT
CGCAGACAAGGAGTCGCCGCCTCTCTCCTTCGTGCCGTTGACACCCATGC
TTATAAAAATAACTTGAACTATATCTGTTTGTATGTCGAGGGCGGCAATG
AATCGGCGCTGCGGTTGTATGAGAAGAATGGGTACAGTGTGGTTGCATTC
TCACCCCAAGCAGAAAGCTTTGCCGCGGCGATTGGGCTGTACAAAGGGCC
TTTTTCATCACGTCGATATTCATTTGCGTACAAACGGTTGGCGGTGGGGT
TTGGGACTGCTGGTGGTGCTGCTGGTGCTGGTGCTGCTGCTGTCGGTGCT
GCTGCTGCCGTTGGTGCAGGTGATAGGGAGCCCGTGTCCGGGCGTGGTAG
ATTTGTTGTGGGTAGTGTTGGGGTTTTGCAGCATCAGCAGCAGCAGCAAC
AACAACAGCAGCAGCCGCAGCCCCCGCAGCTGGAGGGGGAAAGCTTATTG
TCCGAACCAAACAAGCCGTTTCCGGCGCGGTCGCCATCCTTGGTGATGCC
TTTTTGAATGAGGAGGCCAGAGGCACCTCCGGTGTTGGTGGGCTCGGTGG
AAGCAAGCACACATGAGTTTGCCGAAGTTGGTTTCAGCCCCTGTCTGTCC
GAGGCAAGGAAAGGCAGCAAGCTCTACATTACGGGTATGATGGTTTCGGA
AGCCTTTCGCAGACAAGGAGTCGCCGCCTCTCTCCTTCGTGCCGTTGACA
CCCATGCTTATAAAAATAACTTGAACTATATCTGTTTGTATGTCGAGGGC
GGCAATGAATCGGCGCTGCGGTTGTATGAGAAGAATGGGTACAGTGTGGT
TGCATTCTCACCCCAAGCAGAAAGCTTTGCCGCGGCGATTGGGCTGTACA
AAGGGCCTTTTTCATCACGTCGATATTCATTTGCGTACAAACGGTTGGCG
GTGGGGTTTGGGACTGCTGGTGGTGCTGCTGGTGCTGGTGCTGCTGCTGT
CGGTGCTGCTGCTGCCGTTGGTGCAGGTGATAGGGAGCCCGTGTCCGGGC
GTGGTAGATTTGTTGTGGGTAGTGTTGGGGTTTTGCAGCATCAGCAGCAG
CAGCAACAACAACAGCAGCAGCCGCAGCCCCCGCAGCTGGAGGGGGAAAG
CTTATTGTCCGAACCAAACAAGCCGTTTCCGGCGCGGTCGCCATCCTTGG
TGATGCCTTTTTGA
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Synonyms
Publications