jgi.p|Nanoce1779_2|610202, mRNA_9949 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|610202
Unique NamemRNA_9949
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1180
Alignment locationscaffold_49:3284..4800 -

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Properties
Property NameValue
TranscriptId610288
TrackFilteredModels2
ProteinId610202
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_49supercontigscaffold_49:3284..4800 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|610202gene_9949Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|610202mRNA_9949-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9949CDS_9949Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9949 ID=mRNA_9949|Name=jgi.p|Nanoce1779_2|610202|organism=Nannochloropsis oceanica|type=mRNA|length=1180bp
CTCCCTCCCTTGGGTCCATCCCTCCCCCAAATCGCCTCCAGGTCGAGGGG
AGCCATATTGGCCTGCTCCAGTAGGAAAGAGCGGAAAATGGGTGCGTCCT
TCAAGGCAGGATAGAGGCGGATGTGCTGAAGCCATGCCTGCAGCTGCTGA
CGGCCTAAGTGCAGACTCTCTAACGTCAGTCCTTCCCCTGCACCGCTGCC
CATGCCACCACCCATCTGATCCGATGCCACAAGAGAAGACGGGCAAGGCT
GCAAACCCGGTGAAATCTCCCGCAACCTATCCGACAGCGCGCGAAAAGCG
GCCGGCCGACGGTAGACAGTCCAGGATGCGGCGTGCGTTGGTTGGGAGAC
CGTGATGTAATATACGGGAAAGGGTGGCCGGCCTGGCTCACGCACCAGGC
CAAAGCCGTCGATCTCCACAACTATCATCTTGCTCGGGGCCAGGCCGTGG
CGGCGTCGAAGAAGTGGGGAATGGAAAAAGCGGGATTGAATAAGTGGGGT
CTGCTGTGGGTGATATGACTGCCCTCTGCTCTCCTATGTGGTTGCGGGTT
TGGGGGCTGGGGAGGTGTGAGCGAGATGGGCAGGACAGAACAACAGCAGA
GCACAGGATATACTGCCCCACCAGGACAAGGATGTTCCCGTGCGACAAGG
ACCGGCAAGTCCCCAAATATACACGACCAGGCTTGTCGCAAGGCTTTGAG
AGGAATTTAAGGGGTACATGTGTAAGGGCAGTGTGTTAACGAGGGCATCG
ATGCCAAAGGCGTGTCGTGTTGTATGTGCTTGCTCTCATCACGTCCCATG
ACACTCTGGGGAATGAGGAGCAGGCCATCTCCCGACGACCTTTGGAGCCG
ATGCACTACCATAAGTACACATATGTATGAGAAGGCTACAAAAATGGCAA
TGACAAGGATGTCGCATCATAATTGTGGCGCCCCCTGGCTTTTATCTAGC
TCCTCTAGGCGAGTTTAGCCTCCTGCCTACGCGCGGTATCTGCGTGATAT
ATTTGCCAGAAGTGCAGCCACTGCCACAGCTCTTTAACAGATCAATGGAA
TTTAGCGCGCGGTAATGACAAATGTACGGCCTTTCAAAGGTTCATGAGTC
TGTGTGTGCTTTACACAGTGGCTGAGAGGCAAGAAAGGGGCAGGGCATTT
CCAGCTTGTGCGTCGTCTCGTTGCTCGCCG
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protein sequence of jgi.p|Nanoce1779_2|610202

>mRNA_9949-protein ID=mRNA_9949-protein|Name=jgi.p|Nanoce1779_2|610202|organism=Nannochloropsis oceanica|type=polypeptide|length=75bp
MTALCSPMWLRVWGLGRCERDGQDRTTAEHRIYCPTRTRMFPCDKDRQVP
KYTRPGLSQGFERNLRGTCVRAVC*
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mRNA from alignment at scaffold_49:3284..4800-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9949 ID=mRNA_9949|Name=jgi.p|Nanoce1779_2|610202|organism=Nannochloropsis oceanica|type=mRNA|length=1517bp|location=Sequence derived from alignment at scaffold_49:3284..4800- (Nannochloropsis oceanica)
CTCCCTCCCTTGGGTCCATCCCTCCCCCAAATCGCCTCCAGGTCGAGGGG
AGCCATATTGGCCTGCTCCAGTAGGAAAGAGCGGAAAATGGGTGCGTCCT
TCAAGGCAGGATAGAGGCGGATGTGCTGAAGCCATGCCTGAAACAAAGGA
GGGAGTGAGGGAGTGAGGGAGTGACAGAGGGAGGGGTGAGTAAAAATTGA
GCGGACACTGCTTTCTCCCATCCATCAAAATCTCCTATTTCATGATCCCT
TTCATCACTCCCTCCTGCCCTCCCTTCCCTCCTCCCTCCCTCTATCTCTC
GTTCTGCTTACCTGCAGCTGCTGACGGCCTAAGTGCAGACTCTCTAACGT
CAGTCCTTCCCCTGCACCGCTGCCCATGCCACCACCCATCTGTGCAATAT
TGTTATTTGGTGCTTTCTCCCATCAGTAATGAATAAAATCATTTGGACAG
GGTAAAAAGCACGTCCCATACCCAAACAAATCAAAGAGAGACGTCTCTGA
CTCTCCTCCAATTCCTGTCCTCTCTTCCCATCTGTTCCCTCTTCACTCGC
ACCTGATCCGATGCCACAAGAGAAGACGGGCAAGGCTGCAAACCCGGTGA
AATCTCCCGCAACCTATCCGACAGCGCGCGAAAAGCGGCCGGCCGACGGT
AGACAGTCCAGGATGCGGCGTGCGTTGGTTGGGAGACCGTGATGTAATAT
ACGGGAAAGGGTGGCCGGCCTGGCTCACGCACCAGGCCAAAGCCGTCGAT
CTCCACAACTATCATCTTGCTCGGGGCCAGGCCGTGGCGGCGTCGAAGAA
GTGGGGAATGGAAAAAGCGGGATTGAATAAGTGGGGTCTGCTGTGGGTGA
TATGACTGCCCTCTGCTCTCCTATGTGGTTGCGGGTTTGGGGGCTGGGGA
GGTGTGAGCGAGATGGGCAGGACAGAACAACAGCAGAGCACAGGATATAC
TGCCCCACCAGGACAAGGATGTTCCCGTGCGACAAGGACCGGCAAGTCCC
CAAATATACACGACCAGGCTTGTCGCAAGGCTTTGAGAGGAATTTAAGGG
GTACATGTGTAAGGGCAGTGTGTTAACGAGGGCATCGATGCCAAAGGCGT
GTCGTGTTGTATGTGCTTGCTCTCATCACGTCCCATGACACTCTGGGGAA
TGAGGAGCAGGCCATCTCCCGACGACCTTTGGAGCCGATGCACTACCATA
AGTACACATATGTATGAGAAGGCTACAAAAATGGCAATGACAAGGATGTC
GCATCATAATTGTGGCGCCCCCTGGCTTTTATCTAGCTCCTCTAGGCGAG
TTTAGCCTCCTGCCTACGCGCGGTATCTGCGTGATATATTTGCCAGAAGT
GCAGCCACTGCCACAGCTCTTTAACAGATCAATGGAATTTAGCGCGCGGT
AATGACAAATGTACGGCCTTTCAAAGGTTCATGAGTCTGTGTGTGCTTTA
CACAGTGGCTGAGAGGCAAGAAAGGGGCAGGGCATTTCCAGCTTGTGCGT
CGTCTCGTTGCTCGCCG
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Coding sequence (CDS) from alignment at scaffold_49:3284..4800-

>mRNA_9949 ID=mRNA_9949|Name=jgi.p|Nanoce1779_2|610202|organism=Nannochloropsis oceanica|type=CDS|length=225bp|location=Sequence derived from alignment at scaffold_49:3284..4800- (Nannochloropsis oceanica)
ATGACTGCCCTCTGCTCTCCTATGTGGTTGCGGGTTTGGGGGCTGGGGAG
GTGTGAGCGAGATGGGCAGGACAGAACAACAGCAGAGCACAGGATATACT
GCCCCACCAGGACAAGGATGTTCCCGTGCGACAAGGACCGGCAAGTCCCC
AAATATACACGACCAGGCTTGTCGCAAGGCTTTGAGAGGAATTTAAGGGG
TACATGTGTAAGGGCAGTGTGTTAA
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Synonyms
Publications