Properties
| Property Name | Value |
|---|
| TranscriptId | 580664 |
| Track | FilteredModels2 |
| ProteinId | 580578 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_5 | supercontig | scaffold_5:497151..499346 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_2499 ID=mRNA_2499|Name=jgi.p|Nanoce1779_2|580578|organism=Nannochloropsis oceanica|type=mRNA|length=1936bp
CCCAATATCATCGCATAGTTTGTTCTTCATCGCCCTCAGGTAAAAACTAA
CGACGCTCGGCTGTTAATGCTCTTATTGTTCCCAACCACATCTATACCGC
TGTGCATTAAGTCAGGTTGAGACCATCGGCACTAATGGCGCGATTGCTGG
GTGTAGCTGTCGATAAGCTTCCTGTTTACAAACCGACCTCCTCCTCCTGC
CTAGCGCCTCCTGGCCGTCGTGACGACGAAGGAACGTCACGGTGTACTAT
ACATATTGCTATAGCGTCGACGTATGAATACAAACGCCCGCATGGCCCCG
ACCACTATCCATTAAATAACCCTCCATCCTCAGTAAAAATTCTCTCAGAA
GCGCGGTATCATCATAAGCAAGCTTTACAGCCACGATCGGCGGTCTTATT
CTGGGCAAAAACGCGTGTGACGCGGCGGACCCCAACACATGCTTTCTACG
TACGCTAAGGATCGAGCAGCACTTTTTGCCACATCAAACTCTCAACAACC
TACGGCCACGGACCACGAACAGCACTTGTAAATGTTGTTCAAGAACATCG
TTAATGTACCCAATCAAGCTGTGCTTCCTCTTCATCTTGACAATCCCACC
TTATGCTCACGTGCGCACACGTACCCCACACAGAAGAGGCACCACAAGCA
AAATGGCCAAGGCCAACTTCCCACCCTCGGCACGCTATGTTAATATGACG
CAGGTCTATGCGACAGGTGCTCACAATATGCCGGACGAGGACCGTCTCAA
GGTGATGAATGGACTTTCCAAGCCCTTGACGGAGGCCAAGCCCGGTGATT
TGGGGTTTGGGGATGTGGAGTCCATGACGTTCTGTGAAGAGTTTGTAGCG
ATTATGTTCTTATTGATCATTGTCGGGAGCATGCTTTGGATACCGATTGC
AGTGTTGGGTTTCGCCCTGTATGTCCGCAGCGCAATGGCGTGGGTGGTGA
TGCTCATCGTGTTCTTCACCCTGAGCCTGCACCCAGTCCCGCGCATCCAT
GATATGGTTCATTCCCCATTGAATCACTTCATATTCAAGTACTTCAGTCT
AAAAATGGCGAGTGATGCACCACTTGATAGTGCTGGGCGCTATATTTTTG
TCGCTCCGCCACATGGCGTGCTGCCTATGGGGAATCTTATGACGGTGCAC
GCGATGAAGGCGTGTGGTGGATTGGAGTTCCGTGGGCTGACGACTGATGT
CGCGCTTAGGCTGCCTTTGTTTCGACACTATTTAGGCGCCATTGGTACTA
TTGCCGCGACGAGGCACGTGGCGAAGCAGTACCTCGACAAAGGATGGTCA
ATAGGTATATCTTCGGGCGGAGTCGCGGAGATTTTCGAAGTTAACAATAA
GGATGAGGTGGTGTTGATGAAGGAGCGAAAGGGCTTTGTGAAGCTTGCCC
TTCGCACGGGGACTCCGTTGGTAGCTTGTTATATTTTTGGGAATACCAAG
CTGTTGTCGGCGTGGTATGATGATGGGGGGGTGTTGGAGGGCCTGTCGCG
TTATTTGAAATGTGGTGTATTGCCACTTTGGGGTCGCTTTGGTTTGCCGC
TTATGCACCGTCATCCTGTATTGGGCGCGATGGCAAAGCCGATCGTAGTT
CCCAAGGTGGAGGGAGAGCCCACGCAGGAGATGATTGATGAGTACCATAG
TCTCTTCTGTCAGACGCTGGTCGATCTATTTGATAGATACAAGACCTTGT
ATGGCTGGCCGGACAAGAAGCTGCTTATTAAGTGAGTGGGGTATATAATG
TGATGGGAGCGAGAGGGGTATTTATGCAATTGTAGAAGAAATTGTAGGGC
TTTTTGCGTAGGCGTTTTGTATTCAGTCGTGTAGGAGTAGGGACATTTAT
TTGTGAGGTGAAAGTTTTGTCGATGTATCCAAAGACCAAATGCAGTTTAA
AAATCAAAGATAGAAGGAAAACACCATCCTTGAGGA back to topprotein sequence of jgi.p|Nanoce1779_2|580578 >mRNA_2499-protein ID=mRNA_2499-protein|Name=jgi.p|Nanoce1779_2|580578|organism=Nannochloropsis oceanica|type=polypeptide|length=394bp
MYPIKLCFLFILTIPPYAHVRTRTPHRRGTTSKMAKANFPPSARYVNMTQ
VYATGAHNMPDEDRLKVMNGLSKPLTEAKPGDLGFGDVESMTFCEEFVAI
MFLLIIVGSMLWIPIAVLGFALYVRSAMAWVVMLIVFFTLSLHPVPRIHD
MVHSPLNHFIFKYFSLKMASDAPLDSAGRYIFVAPPHGVLPMGNLMTVHA
MKACGGLEFRGLTTDVALRLPLFRHYLGAIGTIAATRHVAKQYLDKGWSI
GISSGGVAEIFEVNNKDEVVLMKERKGFVKLALRTGTPLVACYIFGNTKL
LSAWYDDGGVLEGLSRYLKCGVLPLWGRFGLPLMHRHPVLGAMAKPIVVP
KVEGEPTQEMIDEYHSLFCQTLVDLFDRYKTLYGWPDKKLLIK* back to topmRNA from alignment at scaffold_5:497151..499346+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_2499 ID=mRNA_2499|Name=jgi.p|Nanoce1779_2|580578|organism=Nannochloropsis oceanica|type=mRNA|length=2196bp|location=Sequence derived from alignment at scaffold_5:497151..499346+ (Nannochloropsis oceanica)
CCCAATATCATCGCATAGTTTGTTCTTCATCGCCCTCAGGTAAAAACTAA
CGACGCTCGGCTGTTAATGCTCTTATTGTTCCCAACCACATCTATACCGC
TGTGCATTAAGTCAGGTTGAGACCATCGGCACTAATGGCGCGATTGCTGG
GTGTAGCTGTCGATAAGCTTCCTGTTTACAAACCGACCTCCTCCTCCTGC
CTAGCGCCTCCTGGCCGTCGTGACGACGAAGGAACGTCACGGTGTACTAT
ACATATTGCTATAGCGTCGACGTATGAATACAAACGCCCGCATGGCCCCG
ACCACTATCCATTAAATAACCCTCCATCCTCAGTAAAAATTCTCTCAGAA
GCGCGGTATCATCATAAGCAAGCTTTACAGCCACGATCGGCGGTCTTATT
CTGGGCAAAAACGCGTGTGACGCGGCGGACCCCAACACATGCTTTCTACG
TACGCTAAGGATCGAGCAGCACTTTTTGCCACATCAAACTCTCAACAACC
TACGGCCACGGACCACGAACAGCACTTGTAAATGTTGTTCAAGAACATCG
TTAATGTACCCAATCAAGCTGTGCTTCCTCTTCATCTTGACAATCCCACC
TTATGCTCACGTGCGCACACGTACCCCACACAGAAGAGGCACCACAAGCA
AAATGGCCAAGGCCAACTTCCCACCCTCGGCACGCTATGTTAATATGACG
CAGGTCTATGCGACAGGTGCTCACAATATGCCGGACGAGGACCGTCTCAA
GGTGATGAATGGACTTTCCAAGCCCTTGACGGAGGCCAAGCCCGGTGATT
TGGGGTTTGGGGATGTGGAGTCCATGACGTTCTGTGAAGAGTTTGTAGCG
ATTATGTTCTTATTGATCATTGTCGGGAGCATGCTTTGGATACCGATTGC
AGTGTTGGGTTTCGCCCTGTATGTCCGCAGCGCAATGGCGTGGGTGGTGA
TGCTCATCGTGTTCTTCACCCTGAGCCTGCACCCAGTCCCGCGCATCCAT
GATATGGTTCATTCCCCATTGAATCACTTCATATTCAAGTACTTCAGTCT
AAAAATGGCGAGTGATGCACCACTTGATAGTGCTGGGCGCTATATTTTTG
TCGCTCCGCCACATGGCGTGCTGCCTATGGGGAATCTTATGACGGTGCAC
GCGATGAAGGCGTGTGGTGGATTGTAAGTTTCTAGGGGTGGGACATACAT
TTGTCTTTTAATTAAAAAGCACTTTAGAAACTGAGACGTCTTATTTTTCC
GACCATTCTCATTTACAGGGAGTTCCGTGGGCTGACGACTGATGTCGCGC
TTAGGCTGCCTTTGTTTCGACACTGTACGTGTGTGGGGGATGGAAGAGGG
ATCGTTGTGCGTGAGGAATTCGGGGGGAGGAGAAAAGGCTGCCTTTCCCG
TGACTATTTTTAACAACGTATTTTTATGAGGATACATGTATTTTATAACA
TGCACTTATCATGCGTGTGTATACAATCTCTTTGCACAGATTTAGGCGCC
ATTGGTACTATTGCCGCGACGAGGCACGTGGCGAAGCAGTACCTCGACAA
AGGATGGTCAATAGGTATATCTTCGGGCGGAGTCGCGGAGATTTTCGAAG
TTAACAATAAGGATGAGGTGGTGTTGATGAAGGAGCGAAAGGGCTTTGTG
AAGCTTGCCCTTCGCACGGGGACTCCGTTGGTAGCTTGTTATATTTTTGG
GAATACCAAGCTGTTGTCGGCGTGGTATGATGATGGGGGGGTGTTGGAGG
GCCTGTCGCGTTATTTGAAATGTGGTGTATTGCCACTTTGGGGTCGCTTT
GGTTTGCCGCTTATGCACCGTCATCCTGTATTGGGCGCGATGGCAAAGCC
GATCGTAGTTCCCAAGGTGGAGGGAGAGCCCACGCAGGAGATGATTGATG
AGTACCATAGTCTCTTCTGTCAGACGCTGGTCGATCTATTTGATAGATAC
AAGACCTTGTATGGCTGGCCGGACAAGAAGCTGCTTATTAAGTGAGTGGG
GTATATAATGTGATGGGAGCGAGAGGGGTATTTATGCAATTGTAGAAGAA
ATTGTAGGGCTTTTTGCGTAGGCGTTTTGTATTCAGTCGTGTAGGAGTAG
GGACATTTATTTGTGAGGTGAAAGTTTTGTCGATGTATCCAAAGACCAAA
TGCAGTTTAAAAATCAAAGATAGAAGGAAAACACCATCCTTGAGGA back to topCoding sequence (CDS) from alignment at scaffold_5:497151..499346+ >mRNA_2499 ID=mRNA_2499|Name=jgi.p|Nanoce1779_2|580578|organism=Nannochloropsis oceanica|type=CDS|length=3546bp|location=Sequence derived from alignment at scaffold_5:497151..499346+ (Nannochloropsis oceanica)
ATGTACCCAATCAAGCTGTGCTTCCTCTTCATCTTGACAATCCCACCTTA
TGCTCACGTGCGCACACGTACCCCACACAGAAGAGGCACCACAAGCAAAA
TGGCCAAGGCCAACTTCCCACCCTCGGCACGCTATGTTAATATGACGCAG
GTCTATGCGACAGGTGCTCACAATATGCCGGACGAGGACCGTCTCAAGGT
GATGAATGGACTTTCCAAGCCCTTGACGGAGGCCAAGCCCGGTGATTTGG
GGTTTGGGGATGTGGAGTCCATGACGTTCTGTGAAGAGTTTGTAGCGATT
ATGTTCTTATTGATCATTGTCGGGAGCATGCTTTGGATACCGATTGCAGT
GTTGGGTTTCGCCCTGTATGTCCGCAGCGCAATGGCGTGGGTGGTGATGC
TCATCGTGTTCTTCACCCTGAGCCTGCACCCAGTCCCGCGCATCCATGAT
ATGGTTCATTCCCCATTGAATCACTTCATATTCAAGTACTTCAGTCTAAA
AATGGCGAGTGATGCACCACTTGATAGTGCTGGGCGCTATATTTTTGTCG
CTCCGCCACATGGCGTGCTGCCTATGGGGAATCTTATGACGGTGCACGCG
ATGAAGGCGTGTGGTGGATTGGAGTTCCGTGGGCTGACGACTGATGTCGC
GCTTAGGCTGCCTTTGTTTCGACACTATTTAGGCGCCATTGGTACTATTG
CCGCGACGAGGCACGTGGCGAAGCAGTACCTCGACAAAGGATGGTCAATA
GGTATATCTTCGGGCGGAGTCGCGGAGATTTTCGAAGTTAACAATAAGGA
TGAGGTGGTGTTGATGAAGGAGCGAAAGGGCTTTGTGAAGCTTGCCCTTC
GCACGGGGACTCCGTTGGTAGCTTGTTATATTTTTGGGAATACCAAGCTG
TTGTCGGCGTGGTATGATGATGGGGGGGTGTTGGAGGGCCTGTCGCGTTA
TTTGAAATGTGGTGTATTGCCACTTTGGGGTCGCTTTGGTTTGCCGCTTA
TGCACCGTCATCCTGTATTGGGCGCGATGGCAAAGCCGATCGTAGTTCCC
AAGGTGGAGGGAGAGCCCACGCAGGAGATGATTGATGAGTACCATAGTCT
CTTCTGTCAGACGCTGGTCGATCTATTTGATAGATACAAGACCTTGTATG
GCTGGCCGGACAAGAAGCTGCTTATTAAGTGAATGTACCCAATCAAGCTG
TGCTTCCTCTTCATCTTGACAATCCCACCTTATGCTCACGTGCGCACACG
TACCCCACACAGAAGAGGCACCACAAGCAAAATGGCCAAGGCCAACTTCC
CACCCTCGGCACGCTATGTTAATATGACGCAGGTCTATGCGACAGGTGCT
CACAATATGCCGGACGAGGACCGTCTCAAGGTGATGAATGGACTTTCCAA
GCCCTTGACGGAGGCCAAGCCCGGTGATTTGGGGTTTGGGGATGTGGAGT
CCATGACGTTCTGTGAAGAGTTTGTAGCGATTATGTTCTTATTGATCATT
GTCGGGAGCATGCTTTGGATACCGATTGCAGTGTTGGGTTTCGCCCTGTA
TGTCCGCAGCGCAATGGCGTGGGTGGTGATGCTCATCGTGTTCTTCACCC
TGAGCCTGCACCCAGTCCCGCGCATCCATGATATGGTTCATTCCCCATTG
AATCACTTCATATTCAAGTACTTCAGTCTAAAAATGGCGAGTGATGCACC
ACTTGATAGTGCTGGGCGCTATATTTTTGTCGCTCCGCCACATGGCGTGC
TGCCTATGGGGAATCTTATGACGGTGCACGCGATGAAGGCGTGTGGTGGA
TTGGAGTTCCGTGGGCTGACGACTGATGTCGCGCTTAGGCTGCCTTTGTT
TCGACACTATTTAGGCGCCATTGGTACTATTGCCGCGACGAGGCACGTGG
CGAAGCAGTACCTCGACAAAGGATGGTCAATAGGTATATCTTCGGGCGGA
GTCGCGGAGATTTTCGAAGTTAACAATAAGGATGAGGTGGTGTTGATGAA
GGAGCGAAAGGGCTTTGTGAAGCTTGCCCTTCGCACGGGGACTCCGTTGG
TAGCTTGTTATATTTTTGGGAATACCAAGCTGTTGTCGGCGTGGTATGAT
GATGGGGGGGTGTTGGAGGGCCTGTCGCGTTATTTGAAATGTGGTGTATT
GCCACTTTGGGGTCGCTTTGGTTTGCCGCTTATGCACCGTCATCCTGTAT
TGGGCGCGATGGCAAAGCCGATCGTAGTTCCCAAGGTGGAGGGAGAGCCC
ACGCAGGAGATGATTGATGAGTACCATAGTCTCTTCTGTCAGACGCTGGT
CGATCTATTTGATAGATACAAGACCTTGTATGGCTGGCCGGACAAGAAGC
TGCTTATTAAGTGAATGTACCCAATCAAGCTGTGCTTCCTCTTCATCTTG
ACAATCCCACCTTATGCTCACGTGCGCACACGTACCCCACACAGAAGAGG
CACCACAAGCAAAATGGCCAAGGCCAACTTCCCACCCTCGGCACGCTATG
TTAATATGACGCAGGTCTATGCGACAGGTGCTCACAATATGCCGGACGAG
GACCGTCTCAAGGTGATGAATGGACTTTCCAAGCCCTTGACGGAGGCCAA
GCCCGGTGATTTGGGGTTTGGGGATGTGGAGTCCATGACGTTCTGTGAAG
AGTTTGTAGCGATTATGTTCTTATTGATCATTGTCGGGAGCATGCTTTGG
ATACCGATTGCAGTGTTGGGTTTCGCCCTGTATGTCCGCAGCGCAATGGC
GTGGGTGGTGATGCTCATCGTGTTCTTCACCCTGAGCCTGCACCCAGTCC
CGCGCATCCATGATATGGTTCATTCCCCATTGAATCACTTCATATTCAAG
TACTTCAGTCTAAAAATGGCGAGTGATGCACCACTTGATAGTGCTGGGCG
CTATATTTTTGTCGCTCCGCCACATGGCGTGCTGCCTATGGGGAATCTTA
TGACGGTGCACGCGATGAAGGCGTGTGGTGGATTGGAGTTCCGTGGGCTG
ACGACTGATGTCGCGCTTAGGCTGCCTTTGTTTCGACACTATTTAGGCGC
CATTGGTACTATTGCCGCGACGAGGCACGTGGCGAAGCAGTACCTCGACA
AAGGATGGTCAATAGGTATATCTTCGGGCGGAGTCGCGGAGATTTTCGAA
GTTAACAATAAGGATGAGGTGGTGTTGATGAAGGAGCGAAAGGGCTTTGT
GAAGCTTGCCCTTCGCACGGGGACTCCGTTGGTAGCTTGTTATATTTTTG
GGAATACCAAGCTGTTGTCGGCGTGGTATGATGATGGGGGGGTGTTGGAG
GGCCTGTCGCGTTATTTGAAATGTGGTGTATTGCCACTTTGGGGTCGCTT
TGGTTTGCCGCTTATGCACCGTCATCCTGTATTGGGCGCGATGGCAAAGC
CGATCGTAGTTCCCAAGGTGGAGGGAGAGCCCACGCAGGAGATGATTGAT
GAGTACCATAGTCTCTTCTGTCAGACGCTGGTCGATCTATTTGATAGATA
CAAGACCTTGTATGGCTGGCCGGACAAGAAGCTGCTTATTAAGTGA back to top
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