jgi.p|Nanoce1779_2|610400, mRNA_9998 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|610400
Unique NamemRNA_9998
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1023
Alignment locationscaffold_49:131547..132569 -

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Properties
Property NameValue
TranscriptId610486
TrackFilteredModels2
ProteinId610400
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_49supercontigscaffold_49:131547..132569 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|610400gene_9998Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|610400mRNA_9998-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_9998CDS_9998Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_9998 ID=mRNA_9998|Name=jgi.p|Nanoce1779_2|610400|organism=Nannochloropsis oceanica|type=mRNA|length=1023bp
ATAACAAAACCAAGTATTTTTTCTTCGTCTTTCGTCGATATTTCAATTAT
TTGCGAGCACAAATCAAAGGGACGGCCACTAAGTAAAAGCAGGCGAATAC
ATCCCAAATTTGAGTTTTCCATATCAAACCATCTCTTATTCTCTTCATTT
CTTTCCCATTCCTTCCTTTCCGGATTCTTTTTCCACAGTGGGGTAAGCAT
GTGTCATGGCCAAAGCCAGGCAATTCAAAAGTGCGTATGCATTGCCTTGC
CTCATATGTAAATCATTCAGTGTTTCAGGTCTCCTCACGTTTCTCCGCTT
TTTGTGAGGCTTGCGACATGCCCATGTGCGCATGGTGGGTGACCGCGCAA
TTTACGCAAACACTCACGCACCAAACAGCTATTTGTCCGTTACTCGAATT
ACAGGTACACGTCTTCTTCCTCTTCTTATCCTTCTTATCCTTCTCGTGTT
TGTTGTTACTTATCAGTTCATGATTCTTGGCTCGTCCCTTATTCACTGCC
CCGTGCATGCATGCAGTTATTCGCCTCTTTGCCTCTTTGCTGTCGTCAGT
TACTTTATCTCCCAAACCGTTGACAGAAGGTTATCATTCCCTCATCATGT
CATAGTGCTGGCTCATCGGGCAAAAGCAGCCCTATACAAATTATGTTCAT
GAGAAACCGGAAATAGGGTATGCGGAAAACGATACGAGAAATACACATGT
CCGTTTCTCCTCCTCCTCCTCATCAGGACTCCGCACTCCTTCTCTCGATC
ATTTCTGCTTCTTCTGCTCTTTTTCCTGCTTCTCTGCACTTTGCCCCCTC
AAAAAGGCATCACCAAGGATGGCGACCGCGCCGGAAACGGCTTGTTTGGT
TCGGACAATAAGCTTTCCCCCTCCAGCTGCGGGGGCTGCGGCTGCTGCTG
TTGTTGTTGCTGCTGCTGCTGATGCTGCAAAACCCCAACACTACCCACAA
CAAATCTACCACGCCCGGACACGGGCTCCCTATCACCTGCACCAACGGCA
GCAGCAGCACCGACAGCAGCAGC
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protein sequence of jgi.p|Nanoce1779_2|610400

>mRNA_9998-protein ID=mRNA_9998-protein|Name=jgi.p|Nanoce1779_2|610400|organism=Nannochloropsis oceanica|type=polypeptide|length=107bp
MVGDRAIYANTHAPNSYLSVTRITGTRLLPLLILLILLVFVVTYQFMILG
SSLIHCPVHACSYSPLCLFAVVSYFISQTVDRRLSFPHHVIVLAHRAKAA
LYKLCS*
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mRNA from alignment at scaffold_49:131547..132569-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_9998 ID=mRNA_9998|Name=jgi.p|Nanoce1779_2|610400|organism=Nannochloropsis oceanica|type=mRNA|length=1023bp|location=Sequence derived from alignment at scaffold_49:131547..132569- (Nannochloropsis oceanica)
ATAACAAAACCAAGTATTTTTTCTTCGTCTTTCGTCGATATTTCAATTAT
TTGCGAGCACAAATCAAAGGGACGGCCACTAAGTAAAAGCAGGCGAATAC
ATCCCAAATTTGAGTTTTCCATATCAAACCATCTCTTATTCTCTTCATTT
CTTTCCCATTCCTTCCTTTCCGGATTCTTTTTCCACAGTGGGGTAAGCAT
GTGTCATGGCCAAAGCCAGGCAATTCAAAAGTGCGTATGCATTGCCTTGC
CTCATATGTAAATCATTCAGTGTTTCAGGTCTCCTCACGTTTCTCCGCTT
TTTGTGAGGCTTGCGACATGCCCATGTGCGCATGGTGGGTGACCGCGCAA
TTTACGCAAACACTCACGCACCAAACAGCTATTTGTCCGTTACTCGAATT
ACAGGTACACGTCTTCTTCCTCTTCTTATCCTTCTTATCCTTCTCGTGTT
TGTTGTTACTTATCAGTTCATGATTCTTGGCTCGTCCCTTATTCACTGCC
CCGTGCATGCATGCAGTTATTCGCCTCTTTGCCTCTTTGCTGTCGTCAGT
TACTTTATCTCCCAAACCGTTGACAGAAGGTTATCATTCCCTCATCATGT
CATAGTGCTGGCTCATCGGGCAAAAGCAGCCCTATACAAATTATGTTCAT
GAGAAACCGGAAATAGGGTATGCGGAAAACGATACGAGAAATACACATGT
CCGTTTCTCCTCCTCCTCCTCATCAGGACTCCGCACTCCTTCTCTCGATC
ATTTCTGCTTCTTCTGCTCTTTTTCCTGCTTCTCTGCACTTTGCCCCCTC
AAAAAGGCATCACCAAGGATGGCGACCGCGCCGGAAACGGCTTGTTTGGT
TCGGACAATAAGCTTTCCCCCTCCAGCTGCGGGGGCTGCGGCTGCTGCTG
TTGTTGTTGCTGCTGCTGCTGATGCTGCAAAACCCCAACACTACCCACAA
CAAATCTACCACGCCCGGACACGGGCTCCCTATCACCTGCACCAACGGCA
GCAGCAGCACCGACAGCAGCAGC
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Coding sequence (CDS) from alignment at scaffold_49:131547..132569-

>mRNA_9998 ID=mRNA_9998|Name=jgi.p|Nanoce1779_2|610400|organism=Nannochloropsis oceanica|type=CDS|length=321bp|location=Sequence derived from alignment at scaffold_49:131547..132569- (Nannochloropsis oceanica)
ATGGTGGGTGACCGCGCAATTTACGCAAACACTCACGCACCAAACAGCTA
TTTGTCCGTTACTCGAATTACAGGTACACGTCTTCTTCCTCTTCTTATCC
TTCTTATCCTTCTCGTGTTTGTTGTTACTTATCAGTTCATGATTCTTGGC
TCGTCCCTTATTCACTGCCCCGTGCATGCATGCAGTTATTCGCCTCTTTG
CCTCTTTGCTGTCGTCAGTTACTTTATCTCCCAAACCGTTGACAGAAGGT
TATCATTCCCTCATCATGTCATAGTGCTGGCTCATCGGGCAAAAGCAGCC
CTATACAAATTATGTTCATGA
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Synonyms
Publications