jgi.p|Nanoce1779_2|337141, mRNA_2717 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|337141
Unique NamemRNA_2717
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length2005
Alignment locationscaffold_5:1019498..1021502 -

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Properties
Property NameValue
TranscriptId337227
TrackFilteredModels2
ProteinId337141
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:1019498..1021502 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|337141gene_2717Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|337141mRNA_2717-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2717CDS_2717Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2717 ID=mRNA_2717|Name=jgi.p|Nanoce1779_2|337141|organism=Nannochloropsis oceanica|type=mRNA|length=2005bp
TAACATAACCCAACATTTGCACAGTGTACTCGCGCATGGTGATAAGTGAT
AGGACGCAAGCCTCAAGCCGCCACGCCTCGCCTGCATCGCCAAGGGTGTT
GGTCCGTTGTACAGCAGCATCTCCCCTTTCCCTCCTCGCCTCCCCTTGCA
CGCAATGGCCGGCACTCGGCTTTTGACGCAGCTCTGGTTCACTGCAGGGA
TCGGTCTGCTGGCACCTTTTGCGTTTTGGTCAGCTTGGTGGCCCGTGGGG
TTTAAGAGCGTGACTTTGCCTCCCTTGCCGCTGTCACTGCAGAAACCGCA
TACACCGTTTCCCCTAACTCTGCATGTTTTACTTCCCTACGATCACCACC
TCCATGAAGGGACGGAAGTGGAGATAGAAAGCATCCGAGTCGTCTGGACT
ACAATCAGCATTCCTATGGAAGGGAAGGACGAATCACTCTTGGTACAAGC
GCGGCGCCTGCTCCAGGAGCACGCCCCCGGAGATGACGACGAGAGGCTCT
TGCAGTATTGGCTCGTCCTACTCCCTACCCCACAGCCCGCCTCCTCTTTA
GCATCATCATCGTCGTCCTCAAACATCACCTGGCGCCTTCAAGAACGCTT
CGGGTACACCAGCAATTCCATCAATATAGCCAGTCGAGCTTGTCACGACC
TCGCCCAGGCCCTCAGCCACGTCATTTTCAACCCACCTCCCTCCCACCTC
ATCTCCCTCCAACGTAACGTGCAATTGGCCCTTCTCAGTCAAGATGCCAG
CCATCGCTTCTGCAAATGGAACGTTTCCCGCCTATTGGACCACTATCTCA
ACCCTCTTTTCCACCAGCTAGCGCCCTTGACCACCCTCCTTCCCTCCCTC
CAACTCCTCCCCTTCGGGACGCTCCTCCCACCCAGCACCACGCAACGTCA
CGGGCATCGTATTCCTACCTCTGCGCTCATTGGCATGGAAGGATACTGGA
ATGAGAATCTTCTCCCTCCCTCACTCCCTTTCGTGGGGGAAGGAATGGGA
GAGCCCGTGCCTCCCCTCCGCGTCATTTTCTACTGCCCAGCCACGGAGGA
GGAGCAAAGGATGGTGTTTGTTGCGGATGAGCACAAGGGTGGAGAGGATG
CTCCGTCGTCCTCGTCCTCTATTGGGGTGGAGCTGGAAGACTGGGGCGGG
ATGATGGTCCTCCAAACAAACAACCATTCCACTTCCTCCCCTCCGTCCTC
TTCCTCGTCGTCGTCGTCGTCGTCGTCCTCCTCCTCCTCCTCCTCTCCGC
CCTTCTACTCTTTCCTCTCTGATGCCAACTACAGATCCATTACCACCTTT
CTCAAAATCCTCCTCCGCCACTCGCTGGGCTTCCCCTCCTCCCTCCCTCC
CTCCCTCCCTCCCTGCCGCACCTCTCAAGCCCTGCATCCTCTCGAATTGG
ACACGATGGCAATTCACACGGCGGAGGAACGACGACGCGACACCCTCCAC
CGCCTCTCCCTCCTTCGTGACCTCCTTTCTACTCACCCAGGCATGTCCTG
TCCTGCCCGTGTTGCAAGCCGCGTGGAAGCAGCTATGGCCAGCTTACAGA
CTCGGGAAGACGACAGAGAAGGCAGCATTAGTGGTAACAAGAACAGCAGC
AGGAGCAGAAGCAGAAGCGGAGCCACGTCTATCTCTTTCTCCCCCTCCCC
CTCTTCTTTTTGGCATACATTAATGAATTTAAACAACGCGTGGGCTGCTG
CCCAAGAAGCACAACAAGACGAGGCCCTCCTTCCTCCCCCCCACCACCCT
TTCGAGCACTACGCAGCCATCTTCCTCCCCCTTCTCCTCCCTGTTCTCCT
CCCTCTACTCCTGGGACTACAAAATGAGTGGATGCGATACGAGAAGAAAG
TGAATTTGAAGAAGCAGAAGAAGCAGAAGAAGAAACAGAAGCAGAAGACG
GGTTGAAGTGGAGAACTTGGCACGAGAGTACGTGTGTTAGTGTGTGATGG
AGCAGAACCAACGAAATGTGAATAAATAAATAAAGTGCAGTCCATGACAA
ACGAT
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protein sequence of jgi.p|Nanoce1779_2|337141

>mRNA_2717-protein ID=mRNA_2717-protein|Name=jgi.p|Nanoce1779_2|337141|organism=Nannochloropsis oceanica|type=polypeptide|length=584bp
MAGTRLLTQLWFTAGIGLLAPFAFWSAWWPVGFKSVTLPPLPLSLQKPHT
PFPLTLHVLLPYDHHLHEGTEVEIESIRVVWTTISIPMEGKDESLLVQAR
RLLQEHAPGDDDERLLQYWLVLLPTPQPASSLASSSSSSNITWRLQERFG
YTSNSINIASRACHDLAQALSHVIFNPPPSHLISLQRNVQLALLSQDASH
RFCKWNVSRLLDHYLNPLFHQLAPLTTLLPSLQLLPFGTLLPPSTTQRHG
HRIPTSALIGMEGYWNENLLPPSLPFVGEGMGEPVPPLRVIFYCPATEEE
QRMVFVADEHKGGEDAPSSSSSIGVELEDWGGMMVLQTNNHSTSSPPSSS
SSSSSSSSSSSSSSPPFYSFLSDANYRSITTFLKILLRHSLGFPSSLPPS
LPPCRTSQALHPLELDTMAIHTAEERRRDTLHRLSLLRDLLSTHPGMSCP
ARVASRVEAAMASLQTREDDREGSISGNKNSSRSRSRSGATSISFSPSPS
SFWHTLMNLNNAWAAAQEAQQDEALLPPPHHPFEHYAAIFLPLLLPVLLP
LLLGLQNEWMRYEKKVNLKKQKKQKKKQKQKTG*
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mRNA from alignment at scaffold_5:1019498..1021502-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2717 ID=mRNA_2717|Name=jgi.p|Nanoce1779_2|337141|organism=Nannochloropsis oceanica|type=mRNA|length=2005bp|location=Sequence derived from alignment at scaffold_5:1019498..1021502- (Nannochloropsis oceanica)
TAACATAACCCAACATTTGCACAGTGTACTCGCGCATGGTGATAAGTGAT
AGGACGCAAGCCTCAAGCCGCCACGCCTCGCCTGCATCGCCAAGGGTGTT
GGTCCGTTGTACAGCAGCATCTCCCCTTTCCCTCCTCGCCTCCCCTTGCA
CGCAATGGCCGGCACTCGGCTTTTGACGCAGCTCTGGTTCACTGCAGGGA
TCGGTCTGCTGGCACCTTTTGCGTTTTGGTCAGCTTGGTGGCCCGTGGGG
TTTAAGAGCGTGACTTTGCCTCCCTTGCCGCTGTCACTGCAGAAACCGCA
TACACCGTTTCCCCTAACTCTGCATGTTTTACTTCCCTACGATCACCACC
TCCATGAAGGGACGGAAGTGGAGATAGAAAGCATCCGAGTCGTCTGGACT
ACAATCAGCATTCCTATGGAAGGGAAGGACGAATCACTCTTGGTACAAGC
GCGGCGCCTGCTCCAGGAGCACGCCCCCGGAGATGACGACGAGAGGCTCT
TGCAGTATTGGCTCGTCCTACTCCCTACCCCACAGCCCGCCTCCTCTTTA
GCATCATCATCGTCGTCCTCAAACATCACCTGGCGCCTTCAAGAACGCTT
CGGGTACACCAGCAATTCCATCAATATAGCCAGTCGAGCTTGTCACGACC
TCGCCCAGGCCCTCAGCCACGTCATTTTCAACCCACCTCCCTCCCACCTC
ATCTCCCTCCAACGTAACGTGCAATTGGCCCTTCTCAGTCAAGATGCCAG
CCATCGCTTCTGCAAATGGAACGTTTCCCGCCTATTGGACCACTATCTCA
ACCCTCTTTTCCACCAGCTAGCGCCCTTGACCACCCTCCTTCCCTCCCTC
CAACTCCTCCCCTTCGGGACGCTCCTCCCACCCAGCACCACGCAACGTCA
CGGGCATCGTATTCCTACCTCTGCGCTCATTGGCATGGAAGGATACTGGA
ATGAGAATCTTCTCCCTCCCTCACTCCCTTTCGTGGGGGAAGGAATGGGA
GAGCCCGTGCCTCCCCTCCGCGTCATTTTCTACTGCCCAGCCACGGAGGA
GGAGCAAAGGATGGTGTTTGTTGCGGATGAGCACAAGGGTGGAGAGGATG
CTCCGTCGTCCTCGTCCTCTATTGGGGTGGAGCTGGAAGACTGGGGCGGG
ATGATGGTCCTCCAAACAAACAACCATTCCACTTCCTCCCCTCCGTCCTC
TTCCTCGTCGTCGTCGTCGTCGTCGTCCTCCTCCTCCTCCTCCTCTCCGC
CCTTCTACTCTTTCCTCTCTGATGCCAACTACAGATCCATTACCACCTTT
CTCAAAATCCTCCTCCGCCACTCGCTGGGCTTCCCCTCCTCCCTCCCTCC
CTCCCTCCCTCCCTGCCGCACCTCTCAAGCCCTGCATCCTCTCGAATTGG
ACACGATGGCAATTCACACGGCGGAGGAACGACGACGCGACACCCTCCAC
CGCCTCTCCCTCCTTCGTGACCTCCTTTCTACTCACCCAGGCATGTCCTG
TCCTGCCCGTGTTGCAAGCCGCGTGGAAGCAGCTATGGCCAGCTTACAGA
CTCGGGAAGACGACAGAGAAGGCAGCATTAGTGGTAACAAGAACAGCAGC
AGGAGCAGAAGCAGAAGCGGAGCCACGTCTATCTCTTTCTCCCCCTCCCC
CTCTTCTTTTTGGCATACATTAATGAATTTAAACAACGCGTGGGCTGCTG
CCCAAGAAGCACAACAAGACGAGGCCCTCCTTCCTCCCCCCCACCACCCT
TTCGAGCACTACGCAGCCATCTTCCTCCCCCTTCTCCTCCCTGTTCTCCT
CCCTCTACTCCTGGGACTACAAAATGAGTGGATGCGATACGAGAAGAAAG
TGAATTTGAAGAAGCAGAAGAAGCAGAAGAAGAAACAGAAGCAGAAGACG
GGTTGAAGTGGAGAACTTGGCACGAGAGTACGTGTGTTAGTGTGTGATGG
AGCAGAACCAACGAAATGTGAATAAATAAATAAAGTGCAGTCCATGACAA
ACGAT
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Coding sequence (CDS) from alignment at scaffold_5:1019498..1021502-

>mRNA_2717 ID=mRNA_2717|Name=jgi.p|Nanoce1779_2|337141|organism=Nannochloropsis oceanica|type=CDS|length=1752bp|location=Sequence derived from alignment at scaffold_5:1019498..1021502- (Nannochloropsis oceanica)
ATGGCCGGCACTCGGCTTTTGACGCAGCTCTGGTTCACTGCAGGGATCGG
TCTGCTGGCACCTTTTGCGTTTTGGTCAGCTTGGTGGCCCGTGGGGTTTA
AGAGCGTGACTTTGCCTCCCTTGCCGCTGTCACTGCAGAAACCGCATACA
CCGTTTCCCCTAACTCTGCATGTTTTACTTCCCTACGATCACCACCTCCA
TGAAGGGACGGAAGTGGAGATAGAAAGCATCCGAGTCGTCTGGACTACAA
TCAGCATTCCTATGGAAGGGAAGGACGAATCACTCTTGGTACAAGCGCGG
CGCCTGCTCCAGGAGCACGCCCCCGGAGATGACGACGAGAGGCTCTTGCA
GTATTGGCTCGTCCTACTCCCTACCCCACAGCCCGCCTCCTCTTTAGCAT
CATCATCGTCGTCCTCAAACATCACCTGGCGCCTTCAAGAACGCTTCGGG
TACACCAGCAATTCCATCAATATAGCCAGTCGAGCTTGTCACGACCTCGC
CCAGGCCCTCAGCCACGTCATTTTCAACCCACCTCCCTCCCACCTCATCT
CCCTCCAACGTAACGTGCAATTGGCCCTTCTCAGTCAAGATGCCAGCCAT
CGCTTCTGCAAATGGAACGTTTCCCGCCTATTGGACCACTATCTCAACCC
TCTTTTCCACCAGCTAGCGCCCTTGACCACCCTCCTTCCCTCCCTCCAAC
TCCTCCCCTTCGGGACGCTCCTCCCACCCAGCACCACGCAACGTCACGGG
CATCGTATTCCTACCTCTGCGCTCATTGGCATGGAAGGATACTGGAATGA
GAATCTTCTCCCTCCCTCACTCCCTTTCGTGGGGGAAGGAATGGGAGAGC
CCGTGCCTCCCCTCCGCGTCATTTTCTACTGCCCAGCCACGGAGGAGGAG
CAAAGGATGGTGTTTGTTGCGGATGAGCACAAGGGTGGAGAGGATGCTCC
GTCGTCCTCGTCCTCTATTGGGGTGGAGCTGGAAGACTGGGGCGGGATGA
TGGTCCTCCAAACAAACAACCATTCCACTTCCTCCCCTCCGTCCTCTTCC
TCGTCGTCGTCGTCGTCGTCGTCCTCCTCCTCCTCCTCCTCTCCGCCCTT
CTACTCTTTCCTCTCTGATGCCAACTACAGATCCATTACCACCTTTCTCA
AAATCCTCCTCCGCCACTCGCTGGGCTTCCCCTCCTCCCTCCCTCCCTCC
CTCCCTCCCTGCCGCACCTCTCAAGCCCTGCATCCTCTCGAATTGGACAC
GATGGCAATTCACACGGCGGAGGAACGACGACGCGACACCCTCCACCGCC
TCTCCCTCCTTCGTGACCTCCTTTCTACTCACCCAGGCATGTCCTGTCCT
GCCCGTGTTGCAAGCCGCGTGGAAGCAGCTATGGCCAGCTTACAGACTCG
GGAAGACGACAGAGAAGGCAGCATTAGTGGTAACAAGAACAGCAGCAGGA
GCAGAAGCAGAAGCGGAGCCACGTCTATCTCTTTCTCCCCCTCCCCCTCT
TCTTTTTGGCATACATTAATGAATTTAAACAACGCGTGGGCTGCTGCCCA
AGAAGCACAACAAGACGAGGCCCTCCTTCCTCCCCCCCACCACCCTTTCG
AGCACTACGCAGCCATCTTCCTCCCCCTTCTCCTCCCTGTTCTCCTCCCT
CTACTCCTGGGACTACAAAATGAGTGGATGCGATACGAGAAGAAAGTGAA
TTTGAAGAAGCAGAAGAAGCAGAAGAAGAAACAGAAGCAGAAGACGGGTT
GA
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Synonyms
Publications