jgi.p|Nanoce1779_2|337548, mRNA_2732 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|337548
Unique NamemRNA_2732
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1190
Alignment locationscaffold_5:1051316..1052923 +

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Properties
Property NameValue
TranscriptId337634
TrackFilteredModels2
ProteinId337548
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:1051316..1052923 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|337548gene_2732Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|337548mRNA_2732-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2732CDS_2732Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2732 ID=mRNA_2732|Name=jgi.p|Nanoce1779_2|337548|organism=Nannochloropsis oceanica|type=mRNA|length=1190bp
TAGGCAGGCAGTAAATGAGGGATAAATTAAACTTCAAGTAGGCAGGGTGT
TCGCCTATTTTCATTCAGTCGCGCCTGGCGAAATGGCCTGCAAGCCAACG
ACTGCCTGGTGGGCATATAGCTACCAGTCGTGAAAGTAGCACTTCAAGAG
CAGGGGTGCATGGTTGAGCGTGTCCTGTGCATCCTCCTCGACTCCTGCCA
TGGCTGCGACCTCCATACTTGTGTCTAAAGAGGTTGAGGCCCCTCTCCCC
CCCCCATCATGGTCGTCTGAGGGCGAGCCCGCTTCGGCAGCAATAGCAGC
AGTAAACGCCGACAGGAGCGGGGGCGGCGCTGGCACTCGGGAGGGAACTA
GGAACATTAGAAGCACCTCCAGCAGCAGCCAAGGCTACTATATACCTCAT
CAGTCACCTTTAGGACCACGGATAGGGCGGTCTTCGCATCAGGATTCACC
ACCAGCACCCCCCATTTCTTCCCGGCCGAAGTACCAGCACCAGCATCAGC
ACATGCAATTACCGCAAAGTCACCAGCACCAGCATTACCAGCGCTACCAC
TACTACTACCAGTACCAGCATGAGCCTCAAAGCATGTCAGGGGGAGGGCC
ACCATGGCCAACGCTTATGTCGTCGGTGCCCTTACCGCCTTCTGTCCAGC
CCCCCAACCATCCACCAGACATGCAGATCCCTCCTACCTCCCCGATGATC
CTGCAGGATAGACAAGAGAGAGGAGAGGGGAGGAAGAGAGGAAAGTTCCA
ACATCAACACCAGCAGCAGCTAGAGCAGCTGCGAATAGGGGAGATGAATG
TGGGGTTTGAAGGAGGAGAGGAGCAGCATCAGCAGCAGTCACCGTCTGCT
TCGCCTGTGGGGGCGACTGCATTGGCATGGGTTATGGGGCTTGGACTGAG
GCCGTCCCGTTGCTTAACATTCATCACGTATCTGACGCAAGGCCATCTTG
TCATTGATAGGGCGCGAAGCCTCTTACCCCCTCCCCCTTGACTCTCTTCC
ACCTCCCTTCTCCCCAATTGCCTGATCCAACAGGCAAGCCTGGCATCTCT
TCGACGGCCACAACTCCGATCGTGACTTCACGCAAGGCCATCTGCACCTC
TACTCTTTTATCCTGGGTTTCATCCCCTATGACCTCCCTTCTTCCCTCCC
TCATGTGGTTTTAAGATCTCCGCCTTCAGTAGGAGGAGGA
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protein sequence of jgi.p|Nanoce1779_2|337548

>mRNA_2732-protein ID=mRNA_2732-protein|Name=jgi.p|Nanoce1779_2|337548|organism=Nannochloropsis oceanica|type=polypeptide|length=264bp
MAATSILVSKEVEAPLPPPSWSSEGEPASAAIAAVNADRSGGGAGTREGT
RNIRSTSSSSQGYYIPHQSPLGPRIGRSSHQDSPPAPPISSRPKYQHQHQ
HMQLPQSHQHQHYQRYHYYYQYQHEPQSMSGGGPPWPTLMSSVPLPPSVQ
PPNHPPDMQIPPTSPMILQDRQERGEGRKRGKFQHQHQQQLEQLRIGEMN
VGFEGGEEQHQQQSPSASPVGATALAWVMGLGLRPSRCLTFITYLTQGHL
VIDRARSLLPPPP*
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mRNA from alignment at scaffold_5:1051316..1052923+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2732 ID=mRNA_2732|Name=jgi.p|Nanoce1779_2|337548|organism=Nannochloropsis oceanica|type=mRNA|length=1608bp|location=Sequence derived from alignment at scaffold_5:1051316..1052923+ (Nannochloropsis oceanica)
TAGGCAGGCAGTAAATGAGGGATAAATTAAACTTCAAGTAGGCAGGGTGT
TCGCCTATTTTCATTCAGTCGCGCCTGGCGAAATGGCCTGCAAGCCAACG
ACTGCCTGGTGGGCATATAGCTACCAGTCGTGAAAGTAGCACTTCAAGAG
CAGGGGTAAATTCATTTTTAGGGGCTTTCTTCAGGAGAGGCATTTTATGA
GAAGGAGTCTCCGCCAAAGCTCACGCCTCTTTCCTTCGAATACTTTTCTT
TTTGTTCACAGGTGCATGGTTGAGCGTGTCCTGTGCATCCTCCTCGACTC
CTGCCATGGCTGCGACCTCCATACTTGTGTCTAAAGAGGTTGAGGCCCCT
CTCCCCCCCCCATCATGGTCGTCTGAGGGCGAGCCCGCTTCGGCAGCAAT
AGCAGCAGTAAACGCCGACAGGAGCGGGGGCGGCGCTGGCACTCGGGAGG
GAACTAGGAACATTAGAAGCACCTCCAGCAGCAGCCAAGGCTACTATATA
CCTCATCAGTCACCTTTAGGACCACGGATAGGGCGGTCTTCGCATCAGGA
TTCACCACCAGCACCCCCCATTTCTTCCCGGCCGAAGTACCAGCACCAGC
ATCAGCACATGCAATTACCGCAAAGTCACCAGCACCAGCATTACCAGCGC
TACCACTACTACTACCAGTACCAGCATGAGCCTCAAAGCATGTCAGGGGG
AGGGCCACCATGGCCAACGCTTATGTCGTCGGTGCCCTTACCGCCTTCTG
TCCAGCCCCCCAACCATCCACCAGACATGCAGATCCCTCCTACCTCCCCG
ATGATCCTGCAGGATAGACAAGAGAGAGGAGAGGGGAGGAAGAGAGGAAA
GTTCCAACATCAACACCAGCAGCAGCTAGAGCAGCTGCGAATAGGGGAGA
TGAATGTGGGGTTTGAAGGAGGAGAGGAGCAGCATCAGCAGCAGTCACCG
TCTGCTTCGCCTGTGGGGGCGACTGCATTGGCATGGGTTATGGGGCTTGG
ACTGAGGCCGTCCCGTTGCTTAACATTCATCACGTATCTGACGCAAGGCC
ATCTTGTCATTGATAGGGCGCGAAGCCTCTTGTAAGTATTTTGGGGGGGA
ATTATCGTTTGTTGATTGCTTTCCTTGTATTTGCCCACATATTCAGATCA
GGCGAACGCAGTTTTAGGAGTTTTAAGCAACCTACCGACAGAAGTGCCTC
TTTCCTGAACAAGCGTTTATGTGGGCCTTTATCAAATCAGTTTTCCGTAG
CCACATGCGTGCTTGTCATTCACCTATTTACCCTTGCGCTGCACTGTGTA
TGTCACCCTTTTCTCCACCACTCCTGTCATTGCCGACGCGCCTTCACACA
TCCACAACATCTCACTTTTCCTTCTGTTCGCGCTTTTATTAAGACCCCCT
CCCCCTTGACTCTCTTCCACCTCCCTTCTCCCCAATTGCCTGATCCAACA
GGCAAGCCTGGCATCTCTTCGACGGCCACAACTCCGATCGTGACTTCACG
CAAGGCCATCTGCACCTCTACTCTTTTATCCTGGGTTTCATCCCCTATGA
CCTCCCTTCTTCCCTCCCTCATGTGGTTTTAAGATCTCCGCCTTCAGTAG
GAGGAGGA
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Coding sequence (CDS) from alignment at scaffold_5:1051316..1052923+

>mRNA_2732 ID=mRNA_2732|Name=jgi.p|Nanoce1779_2|337548|organism=Nannochloropsis oceanica|type=CDS|length=1584bp|location=Sequence derived from alignment at scaffold_5:1051316..1052923+ (Nannochloropsis oceanica)
ATGGCTGCGACCTCCATACTTGTGTCTAAAGAGGTTGAGGCCCCTCTCCC
CCCCCCATCATGGTCGTCTGAGGGCGAGCCCGCTTCGGCAGCAATAGCAG
CAGTAAACGCCGACAGGAGCGGGGGCGGCGCTGGCACTCGGGAGGGAACT
AGGAACATTAGAAGCACCTCCAGCAGCAGCCAAGGCTACTATATACCTCA
TCAGTCACCTTTAGGACCACGGATAGGGCGGTCTTCGCATCAGGATTCAC
CACCAGCACCCCCCATTTCTTCCCGGCCGAAGTACCAGCACCAGCATCAG
CACATGCAATTACCGCAAAGTCACCAGCACCAGCATTACCAGCGCTACCA
CTACTACTACCAGTACCAGCATGAGCCTCAAAGCATGTCAGGGGGAGGGC
CACCATGGCCAACGCTTATGTCGTCGGTGCCCTTACCGCCTTCTGTCCAG
CCCCCCAACCATCCACCAGACATGCAGATCCCTCCTACCTCCCCGATGAT
CCTGCAGGATAGACAAGAGAGAGGAGAGGGGAGGAAGAGAGGAAAGTTCC
AACATCAACACCAGCAGCAGCTAGAGCAGCTGCGAATAGGGGAGATGAAT
GTGGGGTTTGAAGGAGGAGAGGAGCAGCATCAGCAGCAGTCACCGTCTGC
TTCGCCTGTGGGGGCGACTGCATTGGCATGGGTTATGGGGCTTGGACTGA
GGCCGTCCCGTTGCTTAACATTCATCACGTATCTGACGCAAGGCCATCTT
GTCATTGATAGGGCGCGAAGCCTCTTACCCCCTCCCCCTTGAATGGCTGC
GACCTCCATACTTGTGTCTAAAGAGGTTGAGGCCCCTCTCCCCCCCCCAT
CATGGTCGTCTGAGGGCGAGCCCGCTTCGGCAGCAATAGCAGCAGTAAAC
GCCGACAGGAGCGGGGGCGGCGCTGGCACTCGGGAGGGAACTAGGAACAT
TAGAAGCACCTCCAGCAGCAGCCAAGGCTACTATATACCTCATCAGTCAC
CTTTAGGACCACGGATAGGGCGGTCTTCGCATCAGGATTCACCACCAGCA
CCCCCCATTTCTTCCCGGCCGAAGTACCAGCACCAGCATCAGCACATGCA
ATTACCGCAAAGTCACCAGCACCAGCATTACCAGCGCTACCACTACTACT
ACCAGTACCAGCATGAGCCTCAAAGCATGTCAGGGGGAGGGCCACCATGG
CCAACGCTTATGTCGTCGGTGCCCTTACCGCCTTCTGTCCAGCCCCCCAA
CCATCCACCAGACATGCAGATCCCTCCTACCTCCCCGATGATCCTGCAGG
ATAGACAAGAGAGAGGAGAGGGGAGGAAGAGAGGAAAGTTCCAACATCAA
CACCAGCAGCAGCTAGAGCAGCTGCGAATAGGGGAGATGAATGTGGGGTT
TGAAGGAGGAGAGGAGCAGCATCAGCAGCAGTCACCGTCTGCTTCGCCTG
TGGGGGCGACTGCATTGGCATGGGTTATGGGGCTTGGACTGAGGCCGTCC
CGTTGCTTAACATTCATCACGTATCTGACGCAAGGCCATCTTGTCATTGA
TAGGGCGCGAAGCCTCTTACCCCCTCCCCCTTGA
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Synonyms
Publications