jgi.p|Nanoce1779_2|564083, mRNA_2552 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|564083
Unique Name	mRNA_2552
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	900
Alignment location	scaffold_5:641181..642718 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	564169
Track	FilteredModels2
ProteinId	564083

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_5	supercontig	scaffold_5:641181..642718 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|564083	gene_2552	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|564083	mRNA_2552-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2552	CDS_2552	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_5:641181..642718+
coding sequence from alignment at scaffold_5:641181..642718+

mRNA sequence

>mRNA_2552 ID=mRNA_2552|Name=jgi.p|Nanoce1779_2|564083|organism=Nannochloropsis oceanica|type=mRNA|length=900bp
ATGACGGAGCAAGAGCGGGATCAGGTGGACCAGGTCATGGCTTCCTTCAT
CATCAAGTGCGGCTCTCAAATCGAGATCATTCGCTGTGCACTTGCAGGTG
AGGGTGGAATTGAGAGAGGTTGTAGAAAAACGTACGTATCATTTTATCAA
ATTCAAATTATATCATACCACCCAGAGGCAAGCTCCCCAGAAGCGGGGGG
CGGCAACGCGGCCACGGTTGGCGGCGATGGTTCCCGGTTGGCACATTACG
GAGGGGTTGTATCTTATCTTGCCGAGCGACTACAAGACCTGGGGCACACG
CTGCAAAGTCTGCAATCCCAACGCCGCAAGCTGAAAGCTATCGTGCCGTT
TAGTGGTGGTTTTGGGGGCTCTTCCTCGTCAAGAACCACACCTTGTGCAA
GAAGAAGAATGCACATGACGCCACCCCACAGTCCCTCTGCCAGCGGCAGT
GGCAATTTAAGCCGTCAACGGAAAGCACAGCCAGTCTTGACACAAAGCAA
GCTGGAGGTGGAAGAAGATGAAGCCTTTACGCGGCGAGTGGCAGCACGAG
TAGAAGGGAGAAACCGCCAGGAGCAGCAGCAGCGGCAGGTTTTGCTCACG
CAGGAGAATCGAGTGCTAACAGTGCGGCTCAACAACGAGCTAGAAGACGT
CCGAATGATGGAAGGCAAGATGCTGGAACTCTCGCAGCTATTAGGCCTCT
TCACGGGCAAGCTTCTTGAGCAGCAGGATCAGGTCGAGGAGATACATGAG
GCGGCGCGCGGAGCACACAACAATGTGGGCCAGGCAAACCACGAGCTCCT
TTCGACGCTCGACCGCAACAGCAAGGCGAGTCAGACCATGCTCACATTCG
TCTTTGTCCTTTGTATCGCCCTCCTCATCCTCGACCAGGCCATTCCATAG

protein sequence of jgi.p|Nanoce1779_2|564083

>mRNA_2552-protein ID=mRNA_2552-protein|Name=jgi.p|Nanoce1779_2|564083|organism=Nannochloropsis oceanica|type=polypeptide|length=300bp
MTEQERDQVDQVMASFIIKCGSQIEIIRCALAGEGGIERGCRKTYVSFYQ
IQIISYHPEASSPEAGGGNAATVGGDGSRLAHYGGVVSYLAERLQDLGHT
LQSLQSQRRKLKAIVPFSGGFGGSSSSRTTPCARRRMHMTPPHSPSASGS
GNLSRQRKAQPVLTQSKLEVEEDEAFTRRVAARVEGRNRQEQQQRQVLLT
QENRVLTVRLNNELEDVRMMEGKMLELSQLLGLFTGKLLEQQDQVEEIHE
AARGAHNNVGQANHELLSTLDRNSKASQTMLTFVFVLCIALLILDQAIP*

mRNA from alignment at scaffold_5:641181..642718+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2552 ID=mRNA_2552|Name=jgi.p|Nanoce1779_2|564083|organism=Nannochloropsis oceanica|type=mRNA|length=1538bp|location=Sequence derived from alignment at scaffold_5:641181..642718+ (Nannochloropsis oceanica)
ATGACGGAGCAAGAGCGGGATCAGGTGGACCAGGTCATGGCTTCCTTCAT
CATCAAGTGCGGCTCTCAAATCGAGATCATTCGCTGTGCACTTGCAGGTG
AGGGTGGAATTGAGAGAGGTTGTAGAAAAACGTACGTATCATTTTATCAA
ATTCAAATTATATCATACCACCCAGAGGCAAGCTCCCCAGAAGCGGGGGG
CGGCAACGCGGCCACGGTTGGCGGCGATGGTTCCCGGTTGGCACATTACG
GAGGGGTTGTATCTTATCTTGCCGAGGTACGTGGATGATATGATTGCATG
AGCAGGCTATAGAATGGCATGAAATTCTTCTAGTTTCCGTTCAATCACTC
TGCTTCCTTTCCACAACCCACCCACAGCGACTACAAGACCTGGGGCACAC
GCTGCAAAGTCTGCAATCCCAACGCCGCAAGCTGAAAGCTATCGTGCCGT
TTAGTGGTGGTTTTGGGGGCTCTTCCTCGTCAAGAACCACACCTTGTGCA
AGAAGAAGGTGAGTGGTGGGTTGACTGTAAGACAGGCTCATTTGACTCTT
TTTTTTTCTTCCTTTTTGAACTCGTGACCCATACACGCACAGAATGCACA
TGACGCCACCCCACAGTCCCTCTGCCAGCGGCAGTGGCAATTTAAGCCGT
CAACGGAAAGCACAGCCAGTCTTGACACAAAGCAAGGTTCGTCGTTCCTG
AAGTATGACTGTCATTTATGGATAAATGTGATAAGTTCATTCATTCGCGA
CCGACATCTAAATCATTCCTCATCAGCAGCTCCATGCGGTGATTATGACC
CTTTCGACAGGATGATACTTGACTGATTGTATTGAAGCTACCACTTACCT
GCCCTCCTCCTCTCCCTCCACCCAACAGCTGGAGGTGGAAGAAGATGAAG
CCTTTACGCGGCGAGTGGCAGCACGAGTAGAAGGGAGAAACCGCCAGGAG
CAGCAGCAGCGGCAGGTTTTGCTCACGCAGGAGAATCGAGTGCTAACAGT
GCGGCTCAACAACGAGCTAGAAGACGTCCGGTGCGTGTAGAAAAGAGTGG
CATATGCTGGTTAGGAAATCATAGGTTTATGTATGGGTGCATCCCGATTA
TCATAAGAGAAACGTACACTCCTCACATTCAGCTTTCTGACTCCGAGGCA
AAAGCCTTCTGGCGTATTCACAAAGATTGATCGATTGATTGTTTTAATGA
TTGATTCTTTTTTTCATCGATATTTGACCTTTACAAAATGCCGATTTTAA
CCTCCCACCTACATGATCATGTTTATTCTTCCCGCACACAGAATGATGGA
AGGCAAGATGCTGGAACTCTCGCAGCTATTAGGCCTCTTCACGGGCAAGC
TTCTTGAGCAGCAGGATCAGGTCGAGGAGATACATGAGGCGGCGCGCGGA
GCACACAACAATGTGGGCCAGGCAAACCACGAGCTCCTTTCGACGCTCGA
CCGCAACAGCAAGGCGAGTCAGACCATGCTCACATTCGTCTTTGTCCTTT
GTATCGCCCTCCTCATCCTCGACCAGGCCATTCCATAG

Coding sequence (CDS) from alignment at scaffold_5:641181..642718+

>mRNA_2552 ID=mRNA_2552|Name=jgi.p|Nanoce1779_2|564083|organism=Nannochloropsis oceanica|type=CDS|length=4500bp|location=Sequence derived from alignment at scaffold_5:641181..642718+ (Nannochloropsis oceanica)
ATGACGGAGCAAGAGCGGGATCAGGTGGACCAGGTCATGGCTTCCTTCAT
CATCAAGTGCGGCTCTCAAATCGAGATCATTCGCTGTGCACTTGCAGGTG
AGGGTGGAATTGAGAGAGGTTGTAGAAAAACGTACGTATCATTTTATCAA
ATTCAAATTATATCATACCACCCAGAGGCAAGCTCCCCAGAAGCGGGGGG
CGGCAACGCGGCCACGGTTGGCGGCGATGGTTCCCGGTTGGCACATTACG
GAGGGGTTGTATCTTATCTTGCCGAGCGACTACAAGACCTGGGGCACACG
CTGCAAAGTCTGCAATCCCAACGCCGCAAGCTGAAAGCTATCGTGCCGTT
TAGTGGTGGTTTTGGGGGCTCTTCCTCGTCAAGAACCACACCTTGTGCAA
GAAGAAGAATGCACATGACGCCACCCCACAGTCCCTCTGCCAGCGGCAGT
GGCAATTTAAGCCGTCAACGGAAAGCACAGCCAGTCTTGACACAAAGCAA
GCTGGAGGTGGAAGAAGATGAAGCCTTTACGCGGCGAGTGGCAGCACGAG
TAGAAGGGAGAAACCGCCAGGAGCAGCAGCAGCGGCAGGTTTTGCTCACG
CAGGAGAATCGAGTGCTAACAGTGCGGCTCAACAACGAGCTAGAAGACGT
CCGAATGATGGAAGGCAAGATGCTGGAACTCTCGCAGCTATTAGGCCTCT
TCACGGGCAAGCTTCTTGAGCAGCAGGATCAGGTCGAGGAGATACATGAG
GCGGCGCGCGGAGCACACAACAATGTGGGCCAGGCAAACCACGAGCTCCT
TTCGACGCTCGACCGCAACAGCAAGGCGAGTCAGACCATGCTCACATTCG
TCTTTGTCCTTTGTATCGCCCTCCTCATCCTCGACCAGGCCATTCCATAG
ATGACGGAGCAAGAGCGGGATCAGGTGGACCAGGTCATGGCTTCCTTCAT
CATCAAGTGCGGCTCTCAAATCGAGATCATTCGCTGTGCACTTGCAGGTG
AGGGTGGAATTGAGAGAGGTTGTAGAAAAACGTACGTATCATTTTATCAA
ATTCAAATTATATCATACCACCCAGAGGCAAGCTCCCCAGAAGCGGGGGG
CGGCAACGCGGCCACGGTTGGCGGCGATGGTTCCCGGTTGGCACATTACG
GAGGGGTTGTATCTTATCTTGCCGAGCGACTACAAGACCTGGGGCACACG
CTGCAAAGTCTGCAATCCCAACGCCGCAAGCTGAAAGCTATCGTGCCGTT
TAGTGGTGGTTTTGGGGGCTCTTCCTCGTCAAGAACCACACCTTGTGCAA
GAAGAAGAATGCACATGACGCCACCCCACAGTCCCTCTGCCAGCGGCAGT
GGCAATTTAAGCCGTCAACGGAAAGCACAGCCAGTCTTGACACAAAGCAA
GCTGGAGGTGGAAGAAGATGAAGCCTTTACGCGGCGAGTGGCAGCACGAG
TAGAAGGGAGAAACCGCCAGGAGCAGCAGCAGCGGCAGGTTTTGCTCACG
CAGGAGAATCGAGTGCTAACAGTGCGGCTCAACAACGAGCTAGAAGACGT
CCGAATGATGGAAGGCAAGATGCTGGAACTCTCGCAGCTATTAGGCCTCT
TCACGGGCAAGCTTCTTGAGCAGCAGGATCAGGTCGAGGAGATACATGAG
GCGGCGCGCGGAGCACACAACAATGTGGGCCAGGCAAACCACGAGCTCCT
TTCGACGCTCGACCGCAACAGCAAGGCGAGTCAGACCATGCTCACATTCG
TCTTTGTCCTTTGTATCGCCCTCCTCATCCTCGACCAGGCCATTCCATAG
ATGACGGAGCAAGAGCGGGATCAGGTGGACCAGGTCATGGCTTCCTTCAT
CATCAAGTGCGGCTCTCAAATCGAGATCATTCGCTGTGCACTTGCAGGTG
AGGGTGGAATTGAGAGAGGTTGTAGAAAAACGTACGTATCATTTTATCAA
ATTCAAATTATATCATACCACCCAGAGGCAAGCTCCCCAGAAGCGGGGGG
CGGCAACGCGGCCACGGTTGGCGGCGATGGTTCCCGGTTGGCACATTACG
GAGGGGTTGTATCTTATCTTGCCGAGCGACTACAAGACCTGGGGCACACG
CTGCAAAGTCTGCAATCCCAACGCCGCAAGCTGAAAGCTATCGTGCCGTT
TAGTGGTGGTTTTGGGGGCTCTTCCTCGTCAAGAACCACACCTTGTGCAA
GAAGAAGAATGCACATGACGCCACCCCACAGTCCCTCTGCCAGCGGCAGT
GGCAATTTAAGCCGTCAACGGAAAGCACAGCCAGTCTTGACACAAAGCAA
GCTGGAGGTGGAAGAAGATGAAGCCTTTACGCGGCGAGTGGCAGCACGAG
TAGAAGGGAGAAACCGCCAGGAGCAGCAGCAGCGGCAGGTTTTGCTCACG
CAGGAGAATCGAGTGCTAACAGTGCGGCTCAACAACGAGCTAGAAGACGT
CCGAATGATGGAAGGCAAGATGCTGGAACTCTCGCAGCTATTAGGCCTCT
TCACGGGCAAGCTTCTTGAGCAGCAGGATCAGGTCGAGGAGATACATGAG
GCGGCGCGCGGAGCACACAACAATGTGGGCCAGGCAAACCACGAGCTCCT
TTCGACGCTCGACCGCAACAGCAAGGCGAGTCAGACCATGCTCACATTCG
TCTTTGTCCTTTGTATCGCCCTCCTCATCCTCGACCAGGCCATTCCATAG
ATGACGGAGCAAGAGCGGGATCAGGTGGACCAGGTCATGGCTTCCTTCAT
CATCAAGTGCGGCTCTCAAATCGAGATCATTCGCTGTGCACTTGCAGGTG
AGGGTGGAATTGAGAGAGGTTGTAGAAAAACGTACGTATCATTTTATCAA
ATTCAAATTATATCATACCACCCAGAGGCAAGCTCCCCAGAAGCGGGGGG
CGGCAACGCGGCCACGGTTGGCGGCGATGGTTCCCGGTTGGCACATTACG
GAGGGGTTGTATCTTATCTTGCCGAGCGACTACAAGACCTGGGGCACACG
CTGCAAAGTCTGCAATCCCAACGCCGCAAGCTGAAAGCTATCGTGCCGTT
TAGTGGTGGTTTTGGGGGCTCTTCCTCGTCAAGAACCACACCTTGTGCAA
GAAGAAGAATGCACATGACGCCACCCCACAGTCCCTCTGCCAGCGGCAGT
GGCAATTTAAGCCGTCAACGGAAAGCACAGCCAGTCTTGACACAAAGCAA
GCTGGAGGTGGAAGAAGATGAAGCCTTTACGCGGCGAGTGGCAGCACGAG
TAGAAGGGAGAAACCGCCAGGAGCAGCAGCAGCGGCAGGTTTTGCTCACG
CAGGAGAATCGAGTGCTAACAGTGCGGCTCAACAACGAGCTAGAAGACGT
CCGAATGATGGAAGGCAAGATGCTGGAACTCTCGCAGCTATTAGGCCTCT
TCACGGGCAAGCTTCTTGAGCAGCAGGATCAGGTCGAGGAGATACATGAG
GCGGCGCGCGGAGCACACAACAATGTGGGCCAGGCAAACCACGAGCTCCT
TTCGACGCTCGACCGCAACAGCAAGGCGAGTCAGACCATGCTCACATTCG
TCTTTGTCCTTTGTATCGCCCTCCTCATCCTCGACCAGGCCATTCCATAG
ATGACGGAGCAAGAGCGGGATCAGGTGGACCAGGTCATGGCTTCCTTCAT
CATCAAGTGCGGCTCTCAAATCGAGATCATTCGCTGTGCACTTGCAGGTG
AGGGTGGAATTGAGAGAGGTTGTAGAAAAACGTACGTATCATTTTATCAA
ATTCAAATTATATCATACCACCCAGAGGCAAGCTCCCCAGAAGCGGGGGG
CGGCAACGCGGCCACGGTTGGCGGCGATGGTTCCCGGTTGGCACATTACG
GAGGGGTTGTATCTTATCTTGCCGAGCGACTACAAGACCTGGGGCACACG
CTGCAAAGTCTGCAATCCCAACGCCGCAAGCTGAAAGCTATCGTGCCGTT
TAGTGGTGGTTTTGGGGGCTCTTCCTCGTCAAGAACCACACCTTGTGCAA
GAAGAAGAATGCACATGACGCCACCCCACAGTCCCTCTGCCAGCGGCAGT
GGCAATTTAAGCCGTCAACGGAAAGCACAGCCAGTCTTGACACAAAGCAA
GCTGGAGGTGGAAGAAGATGAAGCCTTTACGCGGCGAGTGGCAGCACGAG
TAGAAGGGAGAAACCGCCAGGAGCAGCAGCAGCGGCAGGTTTTGCTCACG
CAGGAGAATCGAGTGCTAACAGTGCGGCTCAACAACGAGCTAGAAGACGT
CCGAATGATGGAAGGCAAGATGCTGGAACTCTCGCAGCTATTAGGCCTCT
TCACGGGCAAGCTTCTTGAGCAGCAGGATCAGGTCGAGGAGATACATGAG
GCGGCGCGCGGAGCACACAACAATGTGGGCCAGGCAAACCACGAGCTCCT
TTCGACGCTCGACCGCAACAGCAAGGCGAGTCAGACCATGCTCACATTCG
TCTTTGTCCTTTGTATCGCCCTCCTCATCCTCGACCAGGCCATTCCATAG

Synonyms

Publications