jgi.p|Nanoce1779_2|581709, mRNA_2817 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|581709
Unique Name	mRNA_2817
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1860
Alignment location	scaffold_5:1274293..1276326 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	581795
Track	FilteredModels2
ProteinId	581709

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_5	supercontig	scaffold_5:1274293..1276326 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|581709	gene_2817	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|581709	mRNA_2817-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2817	CDS_2817	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_5:1274293..1276326-
coding sequence from alignment at scaffold_5:1274293..1276326-

mRNA sequence

>mRNA_2817 ID=mRNA_2817|Name=jgi.p|Nanoce1779_2|581709|organism=Nannochloropsis oceanica|type=mRNA|length=1860bp
CAGCTACCTTCCCCCACTATCCCGGATCCATCACAGCCTGCCCACTATGT
CCCTCGCCCGAGTGAACCTCCTCCAAGTCGTCCTTGTAGTCACCGCCATG
ACTGCCGTCACCGGCTTCACCTTACCATTCACTTGCCTGCGCTCTTCCTA
CTTCGTTCCAAAGAACCTTTCCCCGTATAATTCCCCCCTCCTCCGTCCTT
CCTGCTCCTCTCTCTCCCCTCCACGTCGCCTGCTCGCCTCGTCGCGCCCA
CCTCCGGCGCTTTCCCCATTGCACTCTTCCCCTCCGCCCTGGCCCTTCCT
GCTCCTTTCCAGCGCGGCCATCCTCATTTCCTACGCCGACCGGGCCAACC
TCGCCACCTGCATCCTTCCCATGGCGCAAGAGCTGGACTGGCCTCTCTCA
GCCCAGGGCCTGGTGCTCTCTTCTTTCTTTGTGGGCTACGGCCTCACGGG
CCTGCTGGGTGGATACCTTGCCGACCGTTACGGGGGATCAAGGGTCCTGC
AAGCGGGCATCTTCCTCTGGTCCACCTTCACCTTGCTCATGCCTTCTTTC
GCCCAGGCCGGCATCATCACCGCGGTGCTCGCTCGCTTTTTTCTGGGCCT
GGGTGAGGGGGTTGCCTTTCCAGCAATTCATGCGATGATTCCTCTCCGTG
TGCCTCCGGACAGTCGCAGCTTGGCCGTGTCCCTCATCACGGCTGCAAGC
TTCTTGGGGGCGGTCTTCGCCTTTGCCCTCTCGCCGCTTCTCATCGAGAC
GGCGGGCTGGCCGTCAGTCTTCTACTTCTTCGGGGCCTTGCCCTTGCTCT
GGTTTCCGCTGTGGTGGCTCTACGGAGGAGGGGAGACAGCGAAGGAAGAC
GCGGACGGATGTCTTGGCGCCGCTGATGGAAAAGGGGAGGAAAGGACGGT
AGGACGAATGGTAAAAGAGAAAAACACGCTCCAAAAGGTCTACCTGCCCG
ATGCGCTTGTGCCATATCCACCTGCCACGAGTAGTACTTACCCTTCTTCT
CTCCCGCCCTCCTCATCCTCGGGGTTGAGCTGGTCTGAGGCCAAGTATCT
GCTGGGTCGGAAGGAGGTGCAAGCCATCTTGGTGGCGCAGTACACGCAGT
CGTGGGGCATCTACGGCCTTCTCAGCTGGCTACCCTCGTATTACAACAAG
ACCTTCAACGTCGACGTTTCAAACCTCGCCGCCTTCACCCTCGCACCCTA
CCTCCTCCAGGCCCTGGTCGGTGTCTCTTCGGGCTACCTGGCCGACAGCC
TTAAAGCCGCTGGGTGGCGCGTCAAGCGTGTGCGGCAGCTGCTCCAGTCG
GCTGGCACCCTGCTCCCCGCCCTATTCCTCCTCCTTGCTACCTCTACCTA
CACCGCCACCGCTGCGTCCTCCTCCCCCTCCCTTGCTTTCTCCTTCCTCT
ATGTCACCGTAGGTGCGGGTTTCTCGGCCTTTACCCTTTCCGGAGTGTCA
TGCTCCCATCTGGACGTCTGCCCCCGCCATGCCGGCGTCGTCTTCGCTGC
GGGCAACACGCTCGCCACGATCGGTGGGCTTTTCTCTGTGCCTGTGGCGA
GTCTGCTGCTGGAAAAAACGGGAAATTTCGATGCGGTCTTTGCCTTGTTC
GCAGCCCACTATCTGGTGGGGGCAGTCGTGTACACCGCCTGGATTGGGGA
GGAGGATGTCTTGCTGGGGTGGGAGGGAGAGAGGGAGAGTGAAGAGGGGA
AGAATAAGGGGGAGGAATAGAGGACGGTTTGGGTGTGGCTTTCATATGTA
TTATAGCAAATCAACATGGGGACGACGGTGATCAAAATAATGAGTGGTTG
TATTGTAAAGTAATATTGGGAAAAAAACATCACACCAAGCAGTGTGAGGA
AAGAACTGAC

protein sequence of jgi.p|Nanoce1779_2|581709

>mRNA_2817-protein ID=mRNA_2817-protein|Name=jgi.p|Nanoce1779_2|581709|organism=Nannochloropsis oceanica|type=polypeptide|length=558bp
MSLARVNLLQVVLVVTAMTAVTGFTLPFTCLRSSYFVPKNLSPYNSPLLR
PSCSSLSPPRRLLASSRPPPALSPLHSSPPPWPFLLLSSAAILISYADRA
NLATCILPMAQELDWPLSAQGLVLSSFFVGYGLTGLLGGYLADRYGGSRV
LQAGIFLWSTFTLLMPSFAQAGIITAVLARFFLGLGEGVAFPAIHAMIPL
RVPPDSRSLAVSLITAASFLGAVFAFALSPLLIETAGWPSVFYFFGALPL
LWFPLWWLYGGGETAKEDADGCLGAADGKGEERTVGRMVKEKNTLQKVYL
PDALVPYPPATSSTYPSSLPPSSSSGLSWSEAKYLLGRKEVQAILVAQYT
QSWGIYGLLSWLPSYYNKTFNVDVSNLAAFTLAPYLLQALVGVSSGYLAD
SLKAAGWRVKRVRQLLQSAGTLLPALFLLLATSTYTATAASSSPSLAFSF
LYVTVGAGFSAFTLSGVSCSHLDVCPRHAGVVFAAGNTLATIGGLFSVPV
ASLLLEKTGNFDAVFALFAAHYLVGAVVYTAWIGEEDVLLGWEGERESEE
GKNKGEE*

mRNA from alignment at scaffold_5:1274293..1276326-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2817 ID=mRNA_2817|Name=jgi.p|Nanoce1779_2|581709|organism=Nannochloropsis oceanica|type=mRNA|length=2034bp|location=Sequence derived from alignment at scaffold_5:1274293..1276326- (Nannochloropsis oceanica)
CAGCTACCTTCCCCCACTATCCCGGATCCATCACAGCCTGCCCACTATGT
CCCTCGCCCGAGTGAACCTCCTCCAAGTCGTCCTTGTAGTCACCGCCATG
ACTGCCGTCACCGGCTTCACCTTACCATTCACTTGCCTGCGCTCTTCCTA
CTTCGTTCCAAAGAACCTTTCCCCGTATAATTCCCCCCTCCTCCGTCCTT
CCTGCTCCTCTCTCTCCCCTCCACGTCGCCTGCTCGCCTCGTCGCGCCCA
CCTCCGGCGCTTTCCCCATTGCACTCTTCCCCTCCGCCCTGGCCCTTCCT
GCTCCTTTCCAGCGCGGCCATCCTCATTTCCTACGCCGACCGGGCCAACC
TCGCCACCTGCATCCTTCCCATGGCGCAAGAGCTGGACTGGCCTCTCTCA
GCCCAGGGCCTGGTGCTCTCTTCTTTCTTTGTGGGCTACGGCCTCACGGG
CCTGCTGGGTGGATACCTTGCCGACCGTTACGGGGGATCAAGGGTCCTGC
AAGCGGGCATCTTCCTCTGGTCCACCTTCACCTTGCTCATGCCTTCTTTC
GCCCAGGCCGGCATCATCACCGCGGTGCTCGCTCGCTTTTTTCTGGGCCT
GGGTGAGGGGGTTGCCTTTCCAGCAATTCATGCGATGATTCCTCTCCGTG
TGCCTCCGGACAGTCGCAGCTTGGCCGTGTCCCTCATCACGGCTGCAAGC
TTCTTGGGGGCGGTCTTCGCCTTTGCCCTCTCGCCGCTTCTCATCGAGAC
GGCGGGCTGGCCGTCAGTCTTCTACTTCTTCGGGGCCTTGCCCTTGCTCT
GGTTTCCGCTGTGGTGGCTCTACGGAGGAGGGGAGACAGCGAAGGAAGAC
GCGGACGGATGTCTTGGCGCCGCTGATGGAAAAGGGGAGGAAAGGACGGT
AGGACGAATGGTAAAAGAGAAAAACACGCTCCAAAAGGTCTACCTGCCCG
ATGCGCTTGTGCCATATCCACCTGCCACGAGTAGTACTTACCCTTCTTCT
CTCCCGCCCTCCTCATCCTCGGGGTTGAGCTGGTCTGAGGCCAAGTATCT
GCTGGGTCGGAAGGAGGTGCAAGCCATCTTGGTGGCGCAGTACACGCAGT
CGTGGGGCATCTACGGCCTTCTCAGCTGGCTACCCTCGTATTACAACAAG
GTGGGTTGGACGGGGGATAGAGTGGCAGGGCGGGCTTTCGCTCTCCTTTC
CGTTGCTTTCCTTACAAATAAGACGAGTCATGTTACATGATTTGGTTGAT
TAGCTTAAAGTCTAGCCAAACATTCTTGAAATACACCAACTGAGTCACTC
CTTTCCCCCCCTCCCTCCCTGCAGACCTTCAACGTCGACGTTTCAAACCT
CGCCGCCTTCACCCTCGCACCCTACCTCCTCCAGGCCCTGGTCGGTGTCT
CTTCGGGCTACCTGGCCGACAGCCTTAAAGCCGCTGGGTGGCGCGTCAAG
CGTGTGCGGCAGCTGCTCCAGTCGGCTGGCACCCTGCTCCCCGCCCTATT
CCTCCTCCTTGCTACCTCTACCTACACCGCCACCGCTGCGTCCTCCTCCC
CCTCCCTTGCTTTCTCCTTCCTCTATGTCACCGTAGGTGCGGGTTTCTCG
GCCTTTACCCTTTCCGGAGTGTCATGCTCCCATCTGGACGTCTGCCCCCG
CCATGCCGGCGTCGTCTTCGCTGCGGGCAACACGCTCGCCACGATCGGTG
GGCTTTTCTCTGTGCCTGTGGCGAGTCTGCTGCTGGAAAAAACGGGAAAT
TTCGATGCGGTCTTTGCCTTGTTCGCAGCCCACTATCTGGTGGGGGCAGT
CGTGTACACCGCCTGGATTGGGGAGGAGGATGTCTTGCTGGGGTGGGAGG
GAGAGAGGGAGAGTGAAGAGGGGAAGAATAAGGGGGAGGAATAGAGGACG
GTTTGGGTGTGGCTTTCATATGTATTATAGCAAATCAACATGGGGACGAC
GGTGATCAAAATAATGAGTGGTTGTATTGTAAAGTAATATTGGGAAAAAA
ACATCACACCAAGCAGTGTGAGGAAAGAACTGAC

Coding sequence (CDS) from alignment at scaffold_5:1274293..1276326-

>mRNA_2817 ID=mRNA_2817|Name=jgi.p|Nanoce1779_2|581709|organism=Nannochloropsis oceanica|type=CDS|length=3348bp|location=Sequence derived from alignment at scaffold_5:1274293..1276326- (Nannochloropsis oceanica)
ACCTTCAACGTCGACGTTTCAAACCTCGCCGCCTTCACCCTCGCACCCTA
CCTCCTCCAGGCCCTGGTCGGTGTCTCTTCGGGCTACCTGGCCGACAGCC
TTAAAGCCGCTGGGTGGCGCGTCAAGCGTGTGCGGCAGCTGCTCCAGTCG
GCTGGCACCCTGCTCCCCGCCCTATTCCTCCTCCTTGCTACCTCTACCTA
CACCGCCACCGCTGCGTCCTCCTCCCCCTCCCTTGCTTTCTCCTTCCTCT
ATGTCACCGTAGGTGCGGGTTTCTCGGCCTTTACCCTTTCCGGAGTGTCA
TGCTCCCATCTGGACGTCTGCCCCCGCCATGCCGGCGTCGTCTTCGCTGC
GGGCAACACGCTCGCCACGATCGGTGGGCTTTTCTCTGTGCCTGTGGCGA
GTCTGCTGCTGGAAAAAACGGGAAATTTCGATGCGGTCTTTGCCTTGTTC
GCAGCCCACTATCTGGTGGGGGCAGTCGTGTACACCGCCTGGATTGGGGA
GGAGGATGTCTTGCTGGGGTGGGAGGGAGAGAGGGAGAGTGAAGAGGGGA
AGAATAAGGGGGAGGAATAGATGTCCCTCGCCCGAGTGAACCTCCTCCAA
GTCGTCCTTGTAGTCACCGCCATGACTGCCGTCACCGGCTTCACCTTACC
ATTCACTTGCCTGCGCTCTTCCTACTTCGTTCCAAAGAACCTTTCCCCGT
ATAATTCCCCCCTCCTCCGTCCTTCCTGCTCCTCTCTCTCCCCTCCACGT
CGCCTGCTCGCCTCGTCGCGCCCACCTCCGGCGCTTTCCCCATTGCACTC
TTCCCCTCCGCCCTGGCCCTTCCTGCTCCTTTCCAGCGCGGCCATCCTCA
TTTCCTACGCCGACCGGGCCAACCTCGCCACCTGCATCCTTCCCATGGCG
CAAGAGCTGGACTGGCCTCTCTCAGCCCAGGGCCTGGTGCTCTCTTCTTT
CTTTGTGGGCTACGGCCTCACGGGCCTGCTGGGTGGATACCTTGCCGACC
GTTACGGGGGATCAAGGGTCCTGCAAGCGGGCATCTTCCTCTGGTCCACC
TTCACCTTGCTCATGCCTTCTTTCGCCCAGGCCGGCATCATCACCGCGGT
GCTCGCTCGCTTTTTTCTGGGCCTGGGTGAGGGGGTTGCCTTTCCAGCAA
TTCATGCGATGATTCCTCTCCGTGTGCCTCCGGACAGTCGCAGCTTGGCC
GTGTCCCTCATCACGGCTGCAAGCTTCTTGGGGGCGGTCTTCGCCTTTGC
CCTCTCGCCGCTTCTCATCGAGACGGCGGGCTGGCCGTCAGTCTTCTACT
TCTTCGGGGCCTTGCCCTTGCTCTGGTTTCCGCTGTGGTGGCTCTACGGA
GGAGGGGAGACAGCGAAGGAAGACGCGGACGGATGTCTTGGCGCCGCTGA
TGGAAAAGGGGAGGAAAGGACGGTAGGACGAATGGTAAAAGAGAAAAACA
CGCTCCAAAAGGTCTACCTGCCCGATGCGCTTGTGCCATATCCACCTGCC
ACGAGTAGTACTTACCCTTCTTCTCTCCCGCCCTCCTCATCCTCGGGGTT
GAGCTGGTCTGAGGCCAAGTATCTGCTGGGTCGGAAGGAGGTGCAAGCCA
TCTTGGTGGCGCAGTACACGCAGTCGTGGGGCATCTACGGCCTTCTCAGC
TGGCTACCCTCGTATTACAACAAGACCTTCAACGTCGACGTTTCAAACCT
CGCCGCCTTCACCCTCGCACCCTACCTCCTCCAGGCCCTGGTCGGTGTCT
CTTCGGGCTACCTGGCCGACAGCCTTAAAGCCGCTGGGTGGCGCGTCAAG
CGTGTGCGGCAGCTGCTCCAGTCGGCTGGCACCCTGCTCCCCGCCCTATT
CCTCCTCCTTGCTACCTCTACCTACACCGCCACCGCTGCGTCCTCCTCCC
CCTCCCTTGCTTTCTCCTTCCTCTATGTCACCGTAGGTGCGGGTTTCTCG
GCCTTTACCCTTTCCGGAGTGTCATGCTCCCATCTGGACGTCTGCCCCCG
CCATGCCGGCGTCGTCTTCGCTGCGGGCAACACGCTCGCCACGATCGGTG
GGCTTTTCTCTGTGCCTGTGGCGAGTCTGCTGCTGGAAAAAACGGGAAAT
TTCGATGCGGTCTTTGCCTTGTTCGCAGCCCACTATCTGGTGGGGGCAGT
CGTGTACACCGCCTGGATTGGGGAGGAGGATGTCTTGCTGGGGTGGGAGG
GAGAGAGGGAGAGTGAAGAGGGGAAGAATAAGGGGGAGGAATAGATGTCC
CTCGCCCGAGTGAACCTCCTCCAAGTCGTCCTTGTAGTCACCGCCATGAC
TGCCGTCACCGGCTTCACCTTACCATTCACTTGCCTGCGCTCTTCCTACT
TCGTTCCAAAGAACCTTTCCCCGTATAATTCCCCCCTCCTCCGTCCTTCC
TGCTCCTCTCTCTCCCCTCCACGTCGCCTGCTCGCCTCGTCGCGCCCACC
TCCGGCGCTTTCCCCATTGCACTCTTCCCCTCCGCCCTGGCCCTTCCTGC
TCCTTTCCAGCGCGGCCATCCTCATTTCCTACGCCGACCGGGCCAACCTC
GCCACCTGCATCCTTCCCATGGCGCAAGAGCTGGACTGGCCTCTCTCAGC
CCAGGGCCTGGTGCTCTCTTCTTTCTTTGTGGGCTACGGCCTCACGGGCC
TGCTGGGTGGATACCTTGCCGACCGTTACGGGGGATCAAGGGTCCTGCAA
GCGGGCATCTTCCTCTGGTCCACCTTCACCTTGCTCATGCCTTCTTTCGC
CCAGGCCGGCATCATCACCGCGGTGCTCGCTCGCTTTTTTCTGGGCCTGG
GTGAGGGGGTTGCCTTTCCAGCAATTCATGCGATGATTCCTCTCCGTGTG
CCTCCGGACAGTCGCAGCTTGGCCGTGTCCCTCATCACGGCTGCAAGCTT
CTTGGGGGCGGTCTTCGCCTTTGCCCTCTCGCCGCTTCTCATCGAGACGG
CGGGCTGGCCGTCAGTCTTCTACTTCTTCGGGGCCTTGCCCTTGCTCTGG
TTTCCGCTGTGGTGGCTCTACGGAGGAGGGGAGACAGCGAAGGAAGACGC
GGACGGATGTCTTGGCGCCGCTGATGGAAAAGGGGAGGAAAGGACGGTAG
GACGAATGGTAAAAGAGAAAAACACGCTCCAAAAGGTCTACCTGCCCGAT
GCGCTTGTGCCATATCCACCTGCCACGAGTAGTACTTACCCTTCTTCTCT
CCCGCCCTCCTCATCCTCGGGGTTGAGCTGGTCTGAGGCCAAGTATCTGC
TGGGTCGGAAGGAGGTGCAAGCCATCTTGGTGGCGCAGTACACGCAGTCG
TGGGGCATCTACGGCCTTCTCAGCTGGCTACCCTCGTATTACAACAAG

Synonyms

Publications