jgi.p|Nanoce1779_2|583580, mRNA_2857 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|583580
Unique Name	mRNA_2857
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1053
Alignment location	scaffold_7:90123..91175 -

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Properties


Property Name	Value
TranscriptId	583666
Track	FilteredModels2
ProteinId	583580

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_7	supercontig	scaffold_7:90123..91175 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|583580	gene_2857	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|583580	mRNA_2857-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2857	CDS_2857	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_7:90123..91175-
coding sequence from alignment at scaffold_7:90123..91175-

mRNA sequence

>mRNA_2857 ID=mRNA_2857|Name=jgi.p|Nanoce1779_2|583580|organism=Nannochloropsis oceanica|type=mRNA|length=1053bp
CCACCATTCCCTTCTCCTCGTCCACGTCCCCCTCCATCCCACCCTCTGTC
TCCTTTCCATCCAAAACCGAATTCCTTTCTCTTCGTTCTCCAGCTGCTGC
TATTGCTGTACCTGCTCCTTCCCACTTCCTCTCGCTCTCCAAAACCAACA
CCTTTCGCGCCAACTTCTCTTTCTCCTTCATCTCCTGCAGAAGCTTTTCA
TGCGTTGTTTCAAGGTCATGTAGCGCTTCGATTGCCTCTTGTTCGCTCTG
AATGGCGGTGGTAGTAGTATATTTCAGCTGAATCTGGAGAATACTCACTT
CATCTTCTAATAGGGCTACCATGCGCAGCAATTCCTGCTGTAAAGGCATC
GTCGGCAGGGCCCCGGTGCCTCCCTCTGCATCGTCCTCGCGGTAGCCAGA
GTCGTTTTGGGGAGAAGTAACGTCCAAAAAAGTAGGGGGAGAATGCTGAT
TATGCTGTTGCTGATGGTAATGATGATGATCATAACGATGATAAGGAGTA
TCGTAATGCAATGGGGATGGATGCTGGGGCTGCTGCGAACGCGATGGCGG
CAAACGTGGTGGTGGCGACCAAACGGCTTTCAGCGTCGAGGAGGAAGATG
CCGCGGTCTCGTTGCTGCTACTTCCTGCTGGTTGGGGCTTGAAGCCACGA
GAGTCCAGCTCCATCGCTGTCCCTCTTTGTGTTGTGCGTAGGTTGGTGAG
AGCAAATTGGAACGTGAAGGTGAAGAAATCGTCATCGAGCGAGTCTGGTA
AAGAGCGATGGCGACGAAGATGATGATGTATCATCTGATACAATCACAGC
TATGATTCAATCAATATGCACACGCATAGAGTACCTCCACAAGCACAGCA
TGCAGGGTATCGGGCTGATCCTGGGCTCTTGGCAGGGATACTGCCCATTA
CATTATATTTTGTCAGAGGGGCTTTCAGAAGAGTTGGCGAGCGTTCAATG
ATACTCCGGGCTTCCCCTCCACATACACTACGCACACAGGCATTGCAGGT
GTCTCTCCATCGATAAAAAGCCCACGGGCCACCTTGACCCTACTTTTATA
TCC

protein sequence of jgi.p|Nanoce1779_2|583580

>mRNA_2857-protein ID=mRNA_2857-protein|Name=jgi.p|Nanoce1779_2|583580|organism=Nannochloropsis oceanica|type=polypeptide|length=83bp
MLIMLLLMVMMMIITMIRSIVMQWGWMLGLLRTRWRQTWWWRPNGFQRRG
GRCRGLVAATSCWLGLEATRVQLHRCPSLCCA*

mRNA from alignment at scaffold_7:90123..91175-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2857 ID=mRNA_2857|Name=jgi.p|Nanoce1779_2|583580|organism=Nannochloropsis oceanica|type=mRNA|length=1053bp|location=Sequence derived from alignment at scaffold_7:90123..91175- (Nannochloropsis oceanica)
CCACCATTCCCTTCTCCTCGTCCACGTCCCCCTCCATCCCACCCTCTGTC
TCCTTTCCATCCAAAACCGAATTCCTTTCTCTTCGTTCTCCAGCTGCTGC
TATTGCTGTACCTGCTCCTTCCCACTTCCTCTCGCTCTCCAAAACCAACA
CCTTTCGCGCCAACTTCTCTTTCTCCTTCATCTCCTGCAGAAGCTTTTCA
TGCGTTGTTTCAAGGTCATGTAGCGCTTCGATTGCCTCTTGTTCGCTCTG
AATGGCGGTGGTAGTAGTATATTTCAGCTGAATCTGGAGAATACTCACTT
CATCTTCTAATAGGGCTACCATGCGCAGCAATTCCTGCTGTAAAGGCATC
GTCGGCAGGGCCCCGGTGCCTCCCTCTGCATCGTCCTCGCGGTAGCCAGA
GTCGTTTTGGGGAGAAGTAACGTCCAAAAAAGTAGGGGGAGAATGCTGAT
TATGCTGTTGCTGATGGTAATGATGATGATCATAACGATGATAAGGAGTA
TCGTAATGCAATGGGGATGGATGCTGGGGCTGCTGCGAACGCGATGGCGG
CAAACGTGGTGGTGGCGACCAAACGGCTTTCAGCGTCGAGGAGGAAGATG
CCGCGGTCTCGTTGCTGCTACTTCCTGCTGGTTGGGGCTTGAAGCCACGA
GAGTCCAGCTCCATCGCTGTCCCTCTTTGTGTTGTGCGTAGGTTGGTGAG
AGCAAATTGGAACGTGAAGGTGAAGAAATCGTCATCGAGCGAGTCTGGTA
AAGAGCGATGGCGACGAAGATGATGATGTATCATCTGATACAATCACAGC
TATGATTCAATCAATATGCACACGCATAGAGTACCTCCACAAGCACAGCA
TGCAGGGTATCGGGCTGATCCTGGGCTCTTGGCAGGGATACTGCCCATTA
CATTATATTTTGTCAGAGGGGCTTTCAGAAGAGTTGGCGAGCGTTCAATG
ATACTCCGGGCTTCCCCTCCACATACACTACGCACACAGGCATTGCAGGT
GTCTCTCCATCGATAAAAAGCCCACGGGCCACCTTGACCCTACTTTTATA
TCC

Coding sequence (CDS) from alignment at scaffold_7:90123..91175-

>mRNA_2857 ID=mRNA_2857|Name=jgi.p|Nanoce1779_2|583580|organism=Nannochloropsis oceanica|type=CDS|length=249bp|location=Sequence derived from alignment at scaffold_7:90123..91175- (Nannochloropsis oceanica)
ATGCTGATTATGCTGTTGCTGATGGTAATGATGATGATCATAACGATGAT
AAGGAGTATCGTAATGCAATGGGGATGGATGCTGGGGCTGCTGCGAACGC
GATGGCGGCAAACGTGGTGGTGGCGACCAAACGGCTTTCAGCGTCGAGGA
GGAAGATGCCGCGGTCTCGTTGCTGCTACTTCCTGCTGGTTGGGGCTTGA
AGCCACGAGAGTCCAGCTCCATCGCTGTCCCTCTTTGTGTTGTGCGTAG

Synonyms

Publications