jgi.p|Nanoce1779_2|613478, mRNA_11546 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|613478
Unique Name	mRNA_11546
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	701
Alignment location	scaffold_75:5803..7553 -

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Properties


Property Name	Value
TranscriptId	613564
Track	FilteredModels2
ProteinId	613478

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_75	supercontig	scaffold_75:5803..7553 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|613478	gene_11546	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|613478	mRNA_11546-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_11546	CDS_11546	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_75:5803..7553-
coding sequence from alignment at scaffold_75:5803..7553-

mRNA sequence

>mRNA_11546 ID=mRNA_11546|Name=jgi.p|Nanoce1779_2|613478|organism=Nannochloropsis oceanica|type=mRNA|length=701bp
GGAGGGAGGGTGGGAAGGAGGAAGAAAAAGAGGAAGGGAAGCGAAAGGAG
AAGACATCAAATGCGGCGCAGCGAGAGCAGCTGTCTCACCTTCTTATGGG
TGTATCTCCCGCGACAGCCCTCCCTCGTCCCCTCCCTCCCTCCCTTTCTC
CCTCCTCCCTCACAAGAAGGAGGGAAGACGGCTCTCCTTGAGCAGATGGC
GGGGATCCATTTTGGCGACACGACGGATCCGGACGCGGCGTCCTTGCCCC
TGTCCAACTCCCTCGTGGATTCGCGGCACACTTTCCTCGAGGTCCACCAG
CACCGCAAGTACCAGTATGACAACCCTCCGTCGCGCCAAGCACTCGCCAT
GGTGCTCTATCATCTCCTCAATCCAACCGCGCCCACCCTTCGGATCAGCT
GCACCCACTGCAACGGCACCCTCGACGCGGGAACCATACGGTGGCACTGC
GGCCAATGCACGCGAGAGACGTCGCTGTGCGAGGCGTGCTTCGCCGCTGG
TATCCACCAAGGAGCGGACAGCATCATCAACGGGAAGAAGCATAAGCTTA
CGCCTTACCGTGTCACCTACCGCTCGCCCGACGAGGAGGGGGGAAGGGGG
AGGGGGACGCACCCACACCACCACCATCCACACCACCATCATGAGCGGTT
GATGAAGGTGGAGGACTAGGCAGGAGGGAAGGAGGGAGAGGAGGAAGAGG
G

protein sequence of jgi.p|Nanoce1779_2|613478

>mRNA_11546-protein ID=mRNA_11546-protein|Name=jgi.p|Nanoce1779_2|613478|organism=Nannochloropsis oceanica|type=polypeptide|length=184bp
PSLVPSLPPFLPPPSQEGGKTALLEQMAGIHFGDTTDPDAASLPLSNSLV
DSRHTFLEVHQHRKYQYDNPPSRQALAMVLYHLLNPTAPTLRISCTHCNG
TLDAGTIRWHCGQCTRETSLCEACFAAGIHQGADSIINGKKHKLTPYRVT
YRSPDEEGGRGRGTHPHHHHPHHHHERLMKVED*

mRNA from alignment at scaffold_75:5803..7553-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_11546 ID=mRNA_11546|Name=jgi.p|Nanoce1779_2|613478|organism=Nannochloropsis oceanica|type=mRNA|length=1751bp|location=Sequence derived from alignment at scaffold_75:5803..7553- (Nannochloropsis oceanica)
GGAGGGAGGGTGGGAAGGAGGAAGAAAAAGAGGAAGGGAAGCGAAAGGAG
AAGACATCAAATGCGGCGCAGCGAGAGCAGCTGTCTCACCTTCTTATGGG
TGTATCTCCCGCGACAGGTAGGGAGGCAGGCAAGGAGGGAGGAAGGGAGG
GAAGGAAGGGCGCTGTAGACTATCATCCCTAGTCTGACCTATTTCTCATC
CTCCCTCCCTCCCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCC
CTCCCTCCCTCAGCTCGTCACGGACACGTTTCGGTCTGTGGAAAAAATGC
GAGGCGACCATCCTTGTCCTCTACCTCCAGCCCTCCCTCGTCCCCTCCCT
CCCTCCCTTTCTCCCTCCTCCCTCACAAGAAGGAGGGAAGACGGTGAGCG
AGGAAGGGAGGGAGGGAGGGAAGGAAGGAGCACTGGCTGCCCTCTCTGCC
CAGCCTTCGGAAGGCTCTCCTTGAGCAGATGGCGGGGATCCATTTTGGCG
ACACGACGGATCCGGTAGGGAGGAAGGGGAGGAGGGAGGAGAGGAGGGAG
GGAGGGCGGAAAGGAGGGAAAAGTAACTTATCTCCAATTCAGCTTCAACT
GCTCACCCCTTCCTCCCTCCCTCCCTCCCTTCCTCCCCTCCCTCCCTCCC
TCCCTCCCTCCCCCAGGACGCGGCGTCCTTGCCCCTGTCCAACTCCCTCG
TGGATTCGCGGCACACTTTCCTCGAGGTCCACCAGCACCGCAAGTACCAG
TATGACAACCCTCCGTCGCGCCAAGCACTCGTCGGTACGTCCTCCCTCCC
TCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCGTT
CCTGGCCTTGCATCTCTTGGGCGAGAGTGTAACATTGCATTCCCTCCCTC
CCTCCCTCTCTCCCTCCCGCCCTCCCTCCCTTTTTCCCTTCTTCTCTCAA
AGTCTATACTCTGCGAACCCTCATCTCTTCCTTCCCTCCCTCCCTCCCTC
CCTCCAGGCCATGGTGCTCTATCATCTCCTCAATCCAACCGCGCCCACCC
TTCGGATCAGCTGCACCCACTGCAACGGTACCCTCCCTCCCTCCCTTCCT
CCCTCCCTCAAATGAGCTAAGCGGATGCTTCTTACAATGTGAACAGCTGA
CCCTCCCTCTCGCTCCCCCTTCCCCACCCCCCACCCTCAGGCACCCTCGA
CGCGGGAACCATACGGTGGCACTGCGGCCAATGCACGCGAGAGACGTCGC
TGTGCGAGGCGTGCTTCGCCGCTGGTATCCACCAAGGAGGCACGTACCCT
GCCCTTTTCTTTTCCCCCTCCCTCTCCCCCCTTCCTCCCTCTTCCTCCCC
CCTTCCTCCCTCTTCCTCCCTTCCACCCTCACGTACCCTGCCCGTTTCTT
TTCCCCCTCCCTCCCTCTTTCTCTCTCTTCTTCCCCTCCCTCCCTCCCTC
CCTCCCTCCCTCCCTCCCTCCCCCCCCCTTCTTCTTTCTGGGAGGTTTGC
CACCTTCCCTTCTCCTTCTCACCACTCCCTCCCTCCCTTCCTCCCTCCCT
TTCTCCGTTGCAAGCGGACAGCATCATCAACGGGAAGAAGCATAAGCTTA
CGCCTTACCGTGTCACCTACCGCTCGCCCGACGAGGAGGGGGGAAGGGGG
AGGGGGACGCACCCACACCACCACCATCCACACCACCATCATGAGCGGTT
GATGAAGGTGGAGGACTAGGCAGGAGGGAAGGAGGGAGAGGAGGAAGAGG
G

Coding sequence (CDS) from alignment at scaffold_75:5803..7553-

>mRNA_11546 ID=mRNA_11546|Name=jgi.p|Nanoce1779_2|613478|organism=Nannochloropsis oceanica|type=CDS|length=3312bp|location=Sequence derived from alignment at scaffold_75:5803..7553- (Nannochloropsis oceanica)
CGGACAGCATCATCAACGGGAAGAAGCATAAGCTTACGCCTTACCGTGTC
ACCTACCGCTCGCCCGACGAGGAGGGGGGAAGGGGGAGGGGGACGCACCC
ACACCACCACCATCCACACCACCATCATGAGCGGTTGATGAAGGTGGAGG
ACTAGGCACCCTCGACGCGGGAACCATACGGTGGCACTGCGGCCAATGCA
CGCGAGAGACGTCGCTGTGCGAGGCGTGCTTCGCCGCTGGTATCCACCAA
GGAGGCCATGGTGCTCTATCATCTCCTCAATCCAACCGCGCCCACCCTTC
GGATCAGCTGCACCCACTGCAACGGACGCGGCGTCCTTGCCCCTGTCCAA
CTCCCTCGTGGATTCGCGGCACACTTTCCTCGAGGTCCACCAGCACCGCA
AGTACCAGTATGACAACCCTCCGTCGCGCCAAGCACTCGCTCTCCTTGAG
CAGATGGCGGGGATCCATTTTGGCGACACGACGGATCCGCCCTCCCTCGT
CCCCTCCCTCCCTCCCTTTCTCCCTCCTCCCTCACAAGAAGGAGGGAAGA
CGCGGACAGCATCATCAACGGGAAGAAGCATAAGCTTACGCCTTACCGTG
TCACCTACCGCTCGCCCGACGAGGAGGGGGGAAGGGGGAGGGGGACGCAC
CCACACCACCACCATCCACACCACCATCATGAGCGGTTGATGAAGGTGGA
GGACTAGGCACCCTCGACGCGGGAACCATACGGTGGCACTGCGGCCAATG
CACGCGAGAGACGTCGCTGTGCGAGGCGTGCTTCGCCGCTGGTATCCACC
AAGGAGGCCATGGTGCTCTATCATCTCCTCAATCCAACCGCGCCCACCCT
TCGGATCAGCTGCACCCACTGCAACGGACGCGGCGTCCTTGCCCCTGTCC
AACTCCCTCGTGGATTCGCGGCACACTTTCCTCGAGGTCCACCAGCACCG
CAAGTACCAGTATGACAACCCTCCGTCGCGCCAAGCACTCGCTCTCCTTG
AGCAGATGGCGGGGATCCATTTTGGCGACACGACGGATCCGCCCTCCCTC
GTCCCCTCCCTCCCTCCCTTTCTCCCTCCTCCCTCACAAGAAGGAGGGAA
GACGCGGACAGCATCATCAACGGGAAGAAGCATAAGCTTACGCCTTACCG
TGTCACCTACCGCTCGCCCGACGAGGAGGGGGGAAGGGGGAGGGGGACGC
ACCCACACCACCACCATCCACACCACCATCATGAGCGGTTGATGAAGGTG
GAGGACTAGGCACCCTCGACGCGGGAACCATACGGTGGCACTGCGGCCAA
TGCACGCGAGAGACGTCGCTGTGCGAGGCGTGCTTCGCCGCTGGTATCCA
CCAAGGAGGCCATGGTGCTCTATCATCTCCTCAATCCAACCGCGCCCACC
CTTCGGATCAGCTGCACCCACTGCAACGGACGCGGCGTCCTTGCCCCTGT
CCAACTCCCTCGTGGATTCGCGGCACACTTTCCTCGAGGTCCACCAGCAC
CGCAAGTACCAGTATGACAACCCTCCGTCGCGCCAAGCACTCGCTCTCCT
TGAGCAGATGGCGGGGATCCATTTTGGCGACACGACGGATCCGCCCTCCC
TCGTCCCCTCCCTCCCTCCCTTTCTCCCTCCTCCCTCACAAGAAGGAGGG
AAGACGCGGACAGCATCATCAACGGGAAGAAGCATAAGCTTACGCCTTAC
CGTGTCACCTACCGCTCGCCCGACGAGGAGGGGGGAAGGGGGAGGGGGAC
GCACCCACACCACCACCATCCACACCACCATCATGAGCGGTTGATGAAGG
TGGAGGACTAGGCACCCTCGACGCGGGAACCATACGGTGGCACTGCGGCC
AATGCACGCGAGAGACGTCGCTGTGCGAGGCGTGCTTCGCCGCTGGTATC
CACCAAGGAGGCCATGGTGCTCTATCATCTCCTCAATCCAACCGCGCCCA
CCCTTCGGATCAGCTGCACCCACTGCAACGGACGCGGCGTCCTTGCCCCT
GTCCAACTCCCTCGTGGATTCGCGGCACACTTTCCTCGAGGTCCACCAGC
ACCGCAAGTACCAGTATGACAACCCTCCGTCGCGCCAAGCACTCGCTCTC
CTTGAGCAGATGGCGGGGATCCATTTTGGCGACACGACGGATCCGCCCTC
CCTCGTCCCCTCCCTCCCTCCCTTTCTCCCTCCTCCCTCACAAGAAGGAG
GGAAGACGCGGACAGCATCATCAACGGGAAGAAGCATAAGCTTACGCCTT
ACCGTGTCACCTACCGCTCGCCCGACGAGGAGGGGGGAAGGGGGAGGGGG
ACGCACCCACACCACCACCATCCACACCACCATCATGAGCGGTTGATGAA
GGTGGAGGACTAGGCACCCTCGACGCGGGAACCATACGGTGGCACTGCGG
CCAATGCACGCGAGAGACGTCGCTGTGCGAGGCGTGCTTCGCCGCTGGTA
TCCACCAAGGAGGCCATGGTGCTCTATCATCTCCTCAATCCAACCGCGCC
CACCCTTCGGATCAGCTGCACCCACTGCAACGGACGCGGCGTCCTTGCCC
CTGTCCAACTCCCTCGTGGATTCGCGGCACACTTTCCTCGAGGTCCACCA
GCACCGCAAGTACCAGTATGACAACCCTCCGTCGCGCCAAGCACTCGCTC
TCCTTGAGCAGATGGCGGGGATCCATTTTGGCGACACGACGGATCCGCCC
TCCCTCGTCCCCTCCCTCCCTCCCTTTCTCCCTCCTCCCTCACAAGAAGG
AGGGAAGACGCGGACAGCATCATCAACGGGAAGAAGCATAAGCTTACGCC
TTACCGTGTCACCTACCGCTCGCCCGACGAGGAGGGGGGAAGGGGGAGGG
GGACGCACCCACACCACCACCATCCACACCACCATCATGAGCGGTTGATG
AAGGTGGAGGACTAGGCACCCTCGACGCGGGAACCATACGGTGGCACTGC
GGCCAATGCACGCGAGAGACGTCGCTGTGCGAGGCGTGCTTCGCCGCTGG
TATCCACCAAGGAGGCCATGGTGCTCTATCATCTCCTCAATCCAACCGCG
CCCACCCTTCGGATCAGCTGCACCCACTGCAACGGACGCGGCGTCCTTGC
CCCTGTCCAACTCCCTCGTGGATTCGCGGCACACTTTCCTCGAGGTCCAC
CAGCACCGCAAGTACCAGTATGACAACCCTCCGTCGCGCCAAGCACTCGC
TCTCCTTGAGCAGATGGCGGGGATCCATTTTGGCGACACGACGGATCCGC
CCTCCCTCGTCCCCTCCCTCCCTCCCTTTCTCCCTCCTCCCTCACAAGAA
GGAGGGAAGACG

Synonyms

Publications