jgi.p|Nanoce1779_2|554045, mRNA_3899 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|554045
Unique Name	mRNA_3899
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1988
Alignment location	scaffold_8:340877..342933 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	554131
Track	FilteredModels2
ProteinId	554045

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_8	supercontig	scaffold_8:340877..342933 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|554045	gene_3899	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|554045	mRNA_3899-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_3899	CDS_3899	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_8:340877..342933+
coding sequence from alignment at scaffold_8:340877..342933+

mRNA sequence

>mRNA_3899 ID=mRNA_3899|Name=jgi.p|Nanoce1779_2|554045|organism=Nannochloropsis oceanica|type=mRNA|length=1988bp
CAGCAACGTGTGTTGTTCACCCAGGCAGTAGCGGAAGGAGGGGTAGGAGT
GGGAGAAGGGTGCAGCAGCAGCAGAAGCAGCAGCAGTTTAGAGGGATACT
TGCTGGCAGCTCAATGTTTGGCTGCGTCAGATAGATGTGAAGAATGCTTA
CTGCTGTTGGAGCAGGTGCTCCCTGCCTGGGAGGAGGAGTGGAGGGAGAA
AGGGGGGAGGGAAGGCGCGGAGGAGCTGGAGGAGGAAGAGGACGGGGGAG
AGGAGGGCGACCTGTCGTTTTATAGGCAGACTCGGCATGTGCAATGGTTG
AAATCGGCGATTATCGTGGCGGGGGCCCGGCAGCAGGAACAGCTTGAAGG
GGTAGGGAAGGGGAAAACAGGTGGAAGAGGAAAAGCCTCAGCACCACCAT
TAGCACGATCACCTTCGCCACCAGCGTTCTCCTTGCCCTCTCCTCAAGCG
CAAAGTGTCCTTACTACTCTAGCAGCCATGTGCTGCCTCCGAGCCCAACT
TCATGAGGGGCAAGACAACCGCACAAGGGCCGCTGCCTGGTGCCGTCATG
CCCTGCAATTTGATGTGTATTGTGTGGAGGCGCTTGAATTTTTGGTTGAC
CGAAAGCTGATGTCCCAGGCGGAGGAGAGGAGATTGTTGAGGGAGGAAGG
GAGGGAAGAAGGGGAGGTGGATAACGGGTGGTTGCGACTGGTGTACACAA
CTCGACTGCTTTGTTTTTCTGACGGGCAGCTGTCGGTGGAGGAACAGCAC
AGAGGAATTAGAGAGGCTTTCGCTGGGCTTGCTCAATTGGGGATGGGAAA
GGATGCGGCGATACTAACGGCACAAGCTGAGATGGCGTATTACTATCAGC
ATGACCCTCACACGGCCCATGCGTTGTGTAAGGAAATCCGTGTGCTGGAT
CCATTTTATGAGCGGTGCCTGCCTGTCTACCTCTCTTCGCTGGTGGAACT
CCGTTTAAAGACTGACTTGTATTATCTCGCGCATCGCTTGGTGGAGATTC
AACCAAAAAGCGCGGTTGCTTGGTTTGCGGTTGGGTGTTACTACGTTGCG
ATCCACAAGAACGAGGCGGCGCAGAGATATTTTCACAAGGCGACCAAATT
GGACCATGCATTTGCCCCGGCCTGGTTGGGGTTCGGGAATGCCTTTGCGG
CACAGGATGAGAGCGACCAAGCCATGTCTGCTTACCGGACTGCGAGCCGT
TTGTTTCCGTCGTTACACTTCCCCTTGTTATACTCGGGGATGGAGTACCT
GCGTACGAACAATCTGTCACTGGCCCTTCATTTCATCCAGGCTGCGCATG
GGCTGAATCCAATGGATGCCCTGGTGCACAACGAATGGGGCGTGGTTCAT
TTCAGACGGGGAAAGTACGCGGAAGCAGCAGAGCGGTTTCGCACCGTGTT
GGCCCTGGCGGGAGGGGCGGGTTCAAGGAAGGGCTTGGGGAGGTGGGAAG
GGACGGTGGTGAATTTGGCGCATTGCTGTCGGAAAGAGGGAAAGTTTCAA
GAGGCCATTGAATGGTACGAGCTGGCTTTGGGCCTGGCCCCAAAGAGGGC
GAGCACGTATGTGGCGTTGGCGTTCACGCATCAGTTGAGGGGGGAGTTAG
ACAGAGCGATTGAGTACTACCATCGTGCGTTGGGATTTAAAAGTGGTGAT
GCGTTTGCGGTGGCCATGTTATCGAGGGCTTTGGGGGATGCAATTTTGGT
GGGAGAAAGAGGGGGAAAAGGGGGAGGTGTCGGGGCTTTGCCACCGCCGA
CGGCGAGTTTAATTATGTCGGTGCCATTGCCGGAGGGGACGGGAGGAAGG
GAGGGAGGAAAGGTGGAAAAGGGGGGGAGGAGGGTCAGTACGGGGAGTGA
GATATATGAGGGGATGGATGAGGGGAGAGAGGTCGAGGGAGAGCAGGAGG
AAGAGGAGGATACTTTGGATTTGTCGGGGTGATGAAAATGGCCAGGGGAA
TAAGGGGAATGATAAAGAGTGAGAGAAGAATGAAAACG

protein sequence of jgi.p|Nanoce1779_2|554045

>mRNA_3899-protein ID=mRNA_3899-protein|Name=jgi.p|Nanoce1779_2|554045|organism=Nannochloropsis oceanica|type=polypeptide|length=485bp
MCCLRAQLHEGQDNRTRAAAWCRHALQFDVYCVEALEFLVDRKLMSQAEE
RRLLREEGREEGEVDNGWLRLVYTTRLLCFSDGQLSVEEQHRGIREAFAG
LAQLGMGKDAAILTAQAEMAYYYQHDPHTAHALCKEIRVLDPFYERCLPV
YLSSLVELRLKTDLYYLAHRLVEIQPKSAVAWFAVGCYYVAIHKNEAAQR
YFHKATKLDHAFAPAWLGFGNAFAAQDESDQAMSAYRTASRLFPSLHFPL
LYSGMEYLRTNNLSLALHFIQAAHGLNPMDALVHNEWGVVHFRRGKYAEA
AERFRTVLALAGGAGSRKGLGRWEGTVVNLAHCCRKEGKFQEAIEWYELA
LGLAPKRASTYVALAFTHQLRGELDRAIEYYHRALGFKSGDAFAVAMLSR
ALGDAILVGERGGKGGGVGALPPPTASLIMSVPLPEGTGGREGGKVEKGG
RRVSTGSEIYEGMDEGREVEGEQEEEEDTLDLSG*

mRNA from alignment at scaffold_8:340877..342933+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_3899 ID=mRNA_3899|Name=jgi.p|Nanoce1779_2|554045|organism=Nannochloropsis oceanica|type=mRNA|length=2057bp|location=Sequence derived from alignment at scaffold_8:340877..342933+ (Nannochloropsis oceanica)
CAGCAACGTGTGTTGTTCACCCAGGCAGTAGCGGAAGGAGGGGTAGGAGT
GGGAGAAGGGTGCAGCAGCAGCAGAAGCAGCAGCAGTTTAGAGGGATACT
TGCTGGCAGCTCAATGTTTGGCTGCGTCAGATAGATGTGAAGAATGCTTA
CTGCTGTTGGAGCAGGTGCTCCCTGCCTGGGAGGAGGAGTGGAGGGAGAA
AGGGGGGAGGGAAGGCGCGGAGGAGCTGGAGGAGGAAGAGGACGGGGGAG
AGGAGGGCGACCTGTCGTTTTATAGGCAGACTCGGCATGTGCAATGGTTG
AAATCGGCGATTATCGTGGCGGGGGCCCGGCAGCAGGAACAGCTTGAAGG
GGTAGGGAAGGGGAAAACAGGTGGAAGAGGAAAAGCCTCAGCACCACCAT
TAGCACGATCACCTTCGCCACCAGCGTTCTCCTTGCCCTCTCCTCAAGCG
CAAAGTGTCCTTACTACTCTAGCAGCCATGTGCTGCCTCCGAGCCCAACT
TCATGAGGGGCAAGACAACCGCACAAGGGCCGCTGCCTGGTGCCGTCATG
CCCTGCAATTTGATGTGTATTGTGTGGAGGCGCTTGAATTTTTGGTTGAC
CGAAAGCTGATGTCCCAGGCGGAGGAGAGGAGATTGTTGAGGGAGGAGTT
AGAGTTTTCTGAACGAGGGGAGGAGGAGGAGGAGGAGGAGGAGAAGGAGG
AGAAGGAGGGGAAGAGAGGGAGGGAAGAAGGGGAGGTGGATAACGGGTGG
TTGCGACTGGTGTACACAACTCGACTGCTTTGTTTTTCTGACGGGCAGCT
GTCGGTGGAGGAACAGCACAGAGGAATTAGAGAGGCTTTCGCTGGGCTTG
CTCAATTGGGGATGGGAAAGGATGCGGCGATACTAACGGCACAAGCTGAG
ATGGCGTATTACTATCAGCATGACCCTCACACGGCCCATGCGTTGTGTAA
GGAAATCCGTGTGCTGGATCCATTTTATGAGCGGTGCCTGCCTGTCTACC
TCTCTTCGCTGGTGGAACTCCGTTTAAAGACTGACTTGTATTATCTCGCG
CATCGCTTGGTGGAGATTCAACCAAAAAGCGCGGTTGCTTGGTTTGCGGT
TGGGTGTTACTACGTTGCGATCCACAAGAACGAGGCGGCGCAGAGATATT
TTCACAAGGCGACCAAATTGGACCATGCATTTGCCCCGGCCTGGTTGGGG
TTCGGGAATGCCTTTGCGGCACAGGATGAGAGCGACCAAGCCATGTCTGC
TTACCGGACTGCGAGCCGTTTGTTTCCGTCGTTACACTTCCCCTTGTTAT
ACTCGGGGATGGAGTACCTGCGTACGAACAATCTGTCACTGGCCCTTCAT
TTCATCCAGGCTGCGCATGGGCTGAATCCAATGGATGCCCTGGTGCACAA
CGAATGGGGCGTGGTTCATTTCAGACGGGGAAAGTACGCGGAAGCAGCAG
AGCGGTTTCGCACCGTGTTGGCCCTGGCGGGAGGGGCGGGTTCAAGGAAG
GGCTTGGGGAGGTGGGAAGGGACGGTGGTGAATTTGGCGCATTGCTGTCG
GAAAGAGGGAAAGTTTCAAGAGGCCATTGAATGGTACGAGCTGGCTTTGG
GCCTGGCCCCAAAGAGGGCGAGCACGTATGTGGCGTTGGCGTTCACGCAT
CAGTTGAGGGGGGAGTTAGACAGAGCGATTGAGTACTACCATCGTGCGTT
GGGATTTAAAAGTGGTGATGCGTTTGCGGTGGCCATGTTATCGAGGGCTT
TGGGGGATGCAATTTTGGTGGGAGAAAGAGGGGGAAAAGGGGGAGGTGTC
GGGGCTTTGCCACCGCCGACGGCGAGTTTAATTATGTCGGTGCCATTGCC
GGAGGGGACGGGAGGAAGGGAGGGAGGAAAGGTGGAAAAGGGGGGGAGGA
GGGTCAGTACGGGGAGTGAGATATATGAGGGGATGGATGAGGGGAGAGAG
GTCGAGGGAGAGCAGGAGGAAGAGGAGGATACTTTGGATTTGTCGGGGTG
ATGAAAATGGCCAGGGGAATAAGGGGAATGATAAAGAGTGAGAGAAGAAT
GAAAACG

Coding sequence (CDS) from alignment at scaffold_8:340877..342933+

>mRNA_3899 ID=mRNA_3899|Name=jgi.p|Nanoce1779_2|554045|organism=Nannochloropsis oceanica|type=CDS|length=2910bp|location=Sequence derived from alignment at scaffold_8:340877..342933+ (Nannochloropsis oceanica)
ATGTGCTGCCTCCGAGCCCAACTTCATGAGGGGCAAGACAACCGCACAAG
GGCCGCTGCCTGGTGCCGTCATGCCCTGCAATTTGATGTGTATTGTGTGG
AGGCGCTTGAATTTTTGGTTGACCGAAAGCTGATGTCCCAGGCGGAGGAG
AGGAGATTGTTGAGGGAGGAAGGGAGGGAAGAAGGGGAGGTGGATAACGG
GTGGTTGCGACTGGTGTACACAACTCGACTGCTTTGTTTTTCTGACGGGC
AGCTGTCGGTGGAGGAACAGCACAGAGGAATTAGAGAGGCTTTCGCTGGG
CTTGCTCAATTGGGGATGGGAAAGGATGCGGCGATACTAACGGCACAAGC
TGAGATGGCGTATTACTATCAGCATGACCCTCACACGGCCCATGCGTTGT
GTAAGGAAATCCGTGTGCTGGATCCATTTTATGAGCGGTGCCTGCCTGTC
TACCTCTCTTCGCTGGTGGAACTCCGTTTAAAGACTGACTTGTATTATCT
CGCGCATCGCTTGGTGGAGATTCAACCAAAAAGCGCGGTTGCTTGGTTTG
CGGTTGGGTGTTACTACGTTGCGATCCACAAGAACGAGGCGGCGCAGAGA
TATTTTCACAAGGCGACCAAATTGGACCATGCATTTGCCCCGGCCTGGTT
GGGGTTCGGGAATGCCTTTGCGGCACAGGATGAGAGCGACCAAGCCATGT
CTGCTTACCGGACTGCGAGCCGTTTGTTTCCGTCGTTACACTTCCCCTTG
TTATACTCGGGGATGGAGTACCTGCGTACGAACAATCTGTCACTGGCCCT
TCATTTCATCCAGGCTGCGCATGGGCTGAATCCAATGGATGCCCTGGTGC
ACAACGAATGGGGCGTGGTTCATTTCAGACGGGGAAAGTACGCGGAAGCA
GCAGAGCGGTTTCGCACCGTGTTGGCCCTGGCGGGAGGGGCGGGTTCAAG
GAAGGGCTTGGGGAGGTGGGAAGGGACGGTGGTGAATTTGGCGCATTGCT
GTCGGAAAGAGGGAAAGTTTCAAGAGGCCATTGAATGGTACGAGCTGGCT
TTGGGCCTGGCCCCAAAGAGGGCGAGCACGTATGTGGCGTTGGCGTTCAC
GCATCAGTTGAGGGGGGAGTTAGACAGAGCGATTGAGTACTACCATCGTG
CGTTGGGATTTAAAAGTGGTGATGCGTTTGCGGTGGCCATGTTATCGAGG
GCTTTGGGGGATGCAATTTTGGTGGGAGAAAGAGGGGGAAAAGGGGGAGG
TGTCGGGGCTTTGCCACCGCCGACGGCGAGTTTAATTATGTCGGTGCCAT
TGCCGGAGGGGACGGGAGGAAGGGAGGGAGGAAAGGTGGAAAAGGGGGGG
AGGAGGGTCAGTACGGGGAGTGAGATATATGAGGGGATGGATGAGGGGAG
AGAGGTCGAGGGAGAGCAGGAGGAAGAGGAGGATACTTTGGATTTGTCGG
GGTGAATGTGCTGCCTCCGAGCCCAACTTCATGAGGGGCAAGACAACCGC
ACAAGGGCCGCTGCCTGGTGCCGTCATGCCCTGCAATTTGATGTGTATTG
TGTGGAGGCGCTTGAATTTTTGGTTGACCGAAAGCTGATGTCCCAGGCGG
AGGAGAGGAGATTGTTGAGGGAGGAAGGGAGGGAAGAAGGGGAGGTGGAT
AACGGGTGGTTGCGACTGGTGTACACAACTCGACTGCTTTGTTTTTCTGA
CGGGCAGCTGTCGGTGGAGGAACAGCACAGAGGAATTAGAGAGGCTTTCG
CTGGGCTTGCTCAATTGGGGATGGGAAAGGATGCGGCGATACTAACGGCA
CAAGCTGAGATGGCGTATTACTATCAGCATGACCCTCACACGGCCCATGC
GTTGTGTAAGGAAATCCGTGTGCTGGATCCATTTTATGAGCGGTGCCTGC
CTGTCTACCTCTCTTCGCTGGTGGAACTCCGTTTAAAGACTGACTTGTAT
TATCTCGCGCATCGCTTGGTGGAGATTCAACCAAAAAGCGCGGTTGCTTG
GTTTGCGGTTGGGTGTTACTACGTTGCGATCCACAAGAACGAGGCGGCGC
AGAGATATTTTCACAAGGCGACCAAATTGGACCATGCATTTGCCCCGGCC
TGGTTGGGGTTCGGGAATGCCTTTGCGGCACAGGATGAGAGCGACCAAGC
CATGTCTGCTTACCGGACTGCGAGCCGTTTGTTTCCGTCGTTACACTTCC
CCTTGTTATACTCGGGGATGGAGTACCTGCGTACGAACAATCTGTCACTG
GCCCTTCATTTCATCCAGGCTGCGCATGGGCTGAATCCAATGGATGCCCT
GGTGCACAACGAATGGGGCGTGGTTCATTTCAGACGGGGAAAGTACGCGG
AAGCAGCAGAGCGGTTTCGCACCGTGTTGGCCCTGGCGGGAGGGGCGGGT
TCAAGGAAGGGCTTGGGGAGGTGGGAAGGGACGGTGGTGAATTTGGCGCA
TTGCTGTCGGAAAGAGGGAAAGTTTCAAGAGGCCATTGAATGGTACGAGC
TGGCTTTGGGCCTGGCCCCAAAGAGGGCGAGCACGTATGTGGCGTTGGCG
TTCACGCATCAGTTGAGGGGGGAGTTAGACAGAGCGATTGAGTACTACCA
TCGTGCGTTGGGATTTAAAAGTGGTGATGCGTTTGCGGTGGCCATGTTAT
CGAGGGCTTTGGGGGATGCAATTTTGGTGGGAGAAAGAGGGGGAAAAGGG
GGAGGTGTCGGGGCTTTGCCACCGCCGACGGCGAGTTTAATTATGTCGGT
GCCATTGCCGGAGGGGACGGGAGGAAGGGAGGGAGGAAAGGTGGAAAAGG
GGGGGAGGAGGGTCAGTACGGGGAGTGAGATATATGAGGGGATGGATGAG
GGGAGAGAGGTCGAGGGAGAGCAGGAGGAAGAGGAGGATACTTTGGATTT
GTCGGGGTGA

Synonyms

Publications