jgi.p|Nanoce1779_2|585544, mRNA_3843 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|585544
Unique NamemRNA_3843
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length585
Alignment locationscaffold_8:178584..179933 -

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Properties
Property NameValue
TranscriptId585630
TrackFilteredModels2
ProteinId585544
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_8supercontigscaffold_8:178584..179933 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|585544gene_3843Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|585544mRNA_3843-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3843CDS_3843Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3843 ID=mRNA_3843|Name=jgi.p|Nanoce1779_2|585544|organism=Nannochloropsis oceanica|type=mRNA|length=585bp
AGCTCCTCGCCACCGCCTTGTTACTCACCAAGGCACAAACAAAGACGCAG
CGTCGTTGTGATGGGGCCTGTTCAGGCCCAGGGGCTCTGTTTGGTCAGTG
GGAAGTCTCCAAAATGCTGACAGAAAGACGACGCCGCCTTTTGAGGTTAC
TTACTGTAGCCTTACTCATCCATCCTCGAGGGCGAGGGCACCGACACCAA
GACCGAAAGCGTCCCAGGACGTTGCAAGAGGTCTTTGACGTGTTTTCTGA
CGACATTTTCCTGAAGCTGCACCGATTTACCAAGGAGCAAAAGCTCTACA
TAATTCCCAGGCTCCACCTCGAGGTCACCGCCCAAGTCAAAGGGATGAGC
ATAATGCCTTCATCGATCGTGTTCGTCATGCTCCTCGGCCACCTTGCGCA
CCTTCACTCTGTATCTGGGACCATGGAGCACGTGTACGGCTACGATCGCA
CACAAATCACTAAGTGGACCAACAGCATGCTTGAGTATTTGTTCAGTTTT
TTTTGTCGATGTGTGTTCGATGCTTTTTGAGGGGTTGGGAAGCAGAGCAA
AACCCTGTAAAAAGCGAAAGGTACAAGAAACACAC
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protein sequence of jgi.p|Nanoce1779_2|585544

>mRNA_3843-protein ID=mRNA_3843-protein|Name=jgi.p|Nanoce1779_2|585544|organism=Nannochloropsis oceanica|type=polypeptide|length=139bp
MLTERRRRLLRLLTVALLIHPRGRGHRHQDRKRPRTLQEVFDVFSDDIFL
KLHRFTKEQKLYIIPRLHLEVTAQVKGMSIMPSSIVFVMLLGHLAHLHSV
SGTMEHVYGYDRTQITKWTNSMLEYLFSFFCRCVFDAF*
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mRNA from alignment at scaffold_8:178584..179933-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3843 ID=mRNA_3843|Name=jgi.p|Nanoce1779_2|585544|organism=Nannochloropsis oceanica|type=mRNA|length=1350bp|location=Sequence derived from alignment at scaffold_8:178584..179933- (Nannochloropsis oceanica)
AGCTCCTCGCCACCGCCTTGTTACTCACCAAGGCACAAACAAAGACGCAG
CGTCGTTGTGATGGGGCCTGTTCAGGCCCAGGGGCTCTGTTTGGTCAGTG
GGAAGTCTCCAAAATGCTGACAGAAAGACGACGCCGCCTTTTGAGGTTAC
TTACTGTAGCCTTACTCATCCATCCTCGAGGGCGAGGGCACCGACACCAA
GACCGAAAGCGTCCCAGGACGTTGCAAGAGGTCTTTGACGTGTTTTCTGA
CGACATTTTCCTGAAGCTGCACCGATTTACCAAGGAGCAAAAGCTCTACA
TAATTCCCAGGCTCCACCTCGAGGTCACCGCCCAAGTCAAAGGGTAAGCA
CGCGGGCGCATTTAGTGCATGGCTTCCTCTCACATGCCCCTGTTTGAGGT
CGAGGAGGAGGCAACACGGTGTAAATTGACCCCTTGCACTCTCTCAATGC
CCTCGCCCCCACTTTCCCACAGGATGAGCATAATGCCTTCATCGATCGTG
TTCGTCATGCTCCTCGGCCACCTTGCGCACCTTCACTCTGTATCTGGGAC
CATGGAGCACGTGTACGGCTACGATCGCACACAAATCACTAAGTGGACCA
ACAGCATGCTTGAGTATTTGTTCAACGTTGGAACTGAACGAAACGCGCCT
AGCAGAGAAGATGAACGAGAACTGCTACTTGATGGGCACGGTATTAACAC
CTGCCGCTCCAGGAGAGAGTAACGCCTACCTTGCAATCGATGGGTGAGCA
TTTAAGGCCTTCTCTATACACCACTTCAAGAACACCGTCTTTCTGGGGCC
TCCCGTAAAAATAATTCATTGATCCACTCCTCTTCACTCACTTACCACGG
CAGGAGAGTTTCTTAGCCTTCCTGCTACCAGGAACGGTACTACAACGCCA
AGTACCACTATCATGGGATTAATTTACAGGGGATGGTGTCCCCCGTAGGC
ATACTCGAGTCAGTCTTTGGCCCTCTTCCTGGTATCCGTAACGACGCCGC
CATGTGGTCTCTCGCCCGGGATTATAGTCCAATGGATCGCATCAGTACCG
CGATCGGGCGGCACTGCTTTGCCCTGTATGACCCGGCTTACAGTGGTCAC
AATATGCAAAATTATATTGCCACGTCCTTCTCCCGCTTTCAACAGGGGGA
CTGACAAGAGAGAAAACCGCCCACCATGGAAGCTGGAGCGGCAGGTGTTA
ATACCGTGCCCATCAAGTAGCAGTACTCGTTCATCTTCTCTGCGAGGCGC
GTTTCGTTCAGTTTTTTTTGTCGATGTGTGTTCGATGCTTTTTGAGGGGT
TGGGAAGCAGAGCAAAACCCTGTAAAAAGCGAAAGGTACAAGAAACACAC
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Coding sequence (CDS) from alignment at scaffold_8:178584..179933-

>mRNA_3843 ID=mRNA_3843|Name=jgi.p|Nanoce1779_2|585544|organism=Nannochloropsis oceanica|type=CDS|length=1251bp|location=Sequence derived from alignment at scaffold_8:178584..179933- (Nannochloropsis oceanica)
GTTCAGTTTTTTTTGTCGATGTGTGTTCGATGCTTTTTGAGATGAGCATA
ATGCCTTCATCGATCGTGTTCGTCATGCTCCTCGGCCACCTTGCGCACCT
TCACTCTGTATCTGGGACCATGGAGCACGTGTACGGCTACGATCGCACAC
AAATCACTAAGTGGACCAACAGCATGCTTGAGTATTTATGCTGACAGAAA
GACGACGCCGCCTTTTGAGGTTACTTACTGTAGCCTTACTCATCCATCCT
CGAGGGCGAGGGCACCGACACCAAGACCGAAAGCGTCCCAGGACGTTGCA
AGAGGTCTTTGACGTGTTTTCTGACGACATTTTCCTGAAGCTGCACCGAT
TTACCAAGGAGCAAAAGCTCTACATAATTCCCAGGCTCCACCTCGAGGTC
ACCGCCCAAGTCAAAGGGTTCAGTTTTTTTTGTCGATGTGTGTTCGATGC
TTTTTGAGATGAGCATAATGCCTTCATCGATCGTGTTCGTCATGCTCCTC
GGCCACCTTGCGCACCTTCACTCTGTATCTGGGACCATGGAGCACGTGTA
CGGCTACGATCGCACACAAATCACTAAGTGGACCAACAGCATGCTTGAGT
ATTTATGCTGACAGAAAGACGACGCCGCCTTTTGAGGTTACTTACTGTAG
CCTTACTCATCCATCCTCGAGGGCGAGGGCACCGACACCAAGACCGAAAG
CGTCCCAGGACGTTGCAAGAGGTCTTTGACGTGTTTTCTGACGACATTTT
CCTGAAGCTGCACCGATTTACCAAGGAGCAAAAGCTCTACATAATTCCCA
GGCTCCACCTCGAGGTCACCGCCCAAGTCAAAGGGTTCAGTTTTTTTTGT
CGATGTGTGTTCGATGCTTTTTGAGATGAGCATAATGCCTTCATCGATCG
TGTTCGTCATGCTCCTCGGCCACCTTGCGCACCTTCACTCTGTATCTGGG
ACCATGGAGCACGTGTACGGCTACGATCGCACACAAATCACTAAGTGGAC
CAACAGCATGCTTGAGTATTTATGCTGACAGAAAGACGACGCCGCCTTTT
GAGGTTACTTACTGTAGCCTTACTCATCCATCCTCGAGGGCGAGGGCACC
GACACCAAGACCGAAAGCGTCCCAGGACGTTGCAAGAGGTCTTTGACGTG
TTTTCTGACGACATTTTCCTGAAGCTGCACCGATTTACCAAGGAGCAAAA
GCTCTACATAATTCCCAGGCTCCACCTCGAGGTCACCGCCCAAGTCAAAG
G
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Synonyms
Publications