jgi.p|Nanoce1779_2|586179, mRNA_4024 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|586179
Unique Name	mRNA_4024
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1905
Alignment location	scaffold_8:660771..662675 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	586265
Track	FilteredModels2
ProteinId	586179

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_8	supercontig	scaffold_8:660771..662675 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|586179	gene_4024	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|586179	mRNA_4024-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4024	CDS_4024	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_8:660771..662675-
coding sequence from alignment at scaffold_8:660771..662675-

mRNA sequence

>mRNA_4024 ID=mRNA_4024|Name=jgi.p|Nanoce1779_2|586179|organism=Nannochloropsis oceanica|type=mRNA|length=1905bp
CTGGGGTTGACGCAACTTATCCTGGTGTACCACCTAAACACCGGTCTGGG
GATCCCCAACGAGATCTTCACCTTCGGCGACAGTGTAGTGCTGACTGTAC
TCGGCCAGATAGCCTTCATGCCGACGCTGGTCTTGGCTGCGCGTTTGTGT
CCTCCAGGCATTGAGGGGACACTCTTTGCGACGTTGATGAGCGTGTTTAA
CGGTGCGGGGGCTTTGGGCGCAGAGCTGGGGGCATTTTTGACGTCCGCGC
TGGGTGTCACCGAGAATAATTTTCAGAATTTGGGTCTGCTAATCGCCATT
TGCAACCTCAGCACCCTTTTGTCTCTACCATTTTTGTCCTTGCTCCCAGC
GGAAAAAAGCAAGAGTGGCGAAGGGGGCGATGCACGAGGAGTTGAGCAGG
AGGAACAGAAGATGGAGGGATATGTCCACGAGACAAAAAATTAGACCAGT
GTACAGTGAATATTAAAGCATCGCCTGCAAGTAAGCAACAAAAATCAGCT
TAGTGGAAGAACATCGGTGGAATGGCTTTTTTGTATGAGGGGAATTTCTT
TCCCCCCCCCCCAATCAAACTTTGCTATTCTGAAGGCTGCCGCGGGCAGA
ATACCCTTCTCTGATCAGTCAGTCTACCAAAAAGCTCTTGCATAGAGAAT
GGTTCGAGAAGGTTAAAACTTAGGCATAGCTTATTTTGGCACGCGTTTCC
CACTTCCTCATAGCGATTTCGCGTGCACGACTCAACAATTAGACAGGTCT
TTGCTGATACTCAGCAGTGTTTGACCTGTTTCAGGTTTTAAGTGCAGCGC
ACATGCTTGTTGGAGACGTCTGCCTCCGGAAGGGAAAAACTGAAGTCAGG
ACAAATTATAAGGTCATTTTTTAACTTGGTGCTGTACCTGTTATCCATAA
GGTTTACATCTCGATAACATCAGCAGAATCCAACTTGCATCGACATCCAA
TGCTGTTATTACCTATGAGTATGCTCCACAATTCTCATGGCATGAAACTG
GCGGAACGATATCTAGGTTGCGCGCTCAAGTGATCTTTCATTTACTTTCG
TCCCCGAAATAGTGTAGGAGCCACCAGAATGCCATGCAAGTATGCTGGCG
GCAGGCACATGTATTATTTCGACCCTCTCGGGCCAGAGCAAGATGCTGAC
AGCATGCATATGTCGTGACAGAGCTATGTACAAACCGTATGATATTCATG
AAAAGTCCTTTTTTGTCTCCCAGCCTCTGCCCCTGCCCTTGGAATCTTAC
GCAAGTTCATTCGACAAGCATGTTTGTGAACAATCCATGATTCGAGATTT
TGGCGGCTTTTACCAGAGTTGTCCTGCTCATGTCTTGCCATTCTGAGACA
AGCAGCGGTGGGTATTAATTCCAGAAGCCGGATAGAACCTTGAGGGCTGC
GCGGGAAGCCGTGAAGGGTCAACGTATTTCCCTGTTGCTTGGCTTTTCTA
GTATTCTATATGGGAGTGACAAATAAAACGGACATGTAGAATATTAAGGC
TGACTGGAAAAGTTAATAAAGAAAATAGGTAGTACAAAGCATAAGACATG
TATCGAAGTAGAGGAGCATTGTATGTCCTTGCTGCCACACTAGTGCATTG
ACAAACCAACGAGATTCAGAGGTCGGGACGCAACGAACGAAGTGAGGAAC
GACAGAAAGGGCGCCAGTACCACGCCACTGTCGTCTATGCAGGGCCGGAA
CTGGTACGTCTCCACGGTTACTTGGTAGTACTTGTGTCTTGACGCCGATT
ACCAAGTATGACATTGAGAGTACCAATAAGGTTGGGGTAGAGTACGAAGT
ATGTAGGGGTCAAAGTACCCATTGGTACCTCTTATTTCAAGCCATAGTAA
AGAAACAGGGAAATCGGGGGCTCCCCATCACCCCTCTGCTTTACGCACAA
CTTCC

protein sequence of jgi.p|Nanoce1779_2|586179

>mRNA_4024-protein ID=mRNA_4024-protein|Name=jgi.p|Nanoce1779_2|586179|organism=Nannochloropsis oceanica|type=polypeptide|length=109bp
MPTLVLAARLCPPGIEGTLFATLMSVFNGAGALGAELGAFLTSALGVTEN
NFQNLGLLIAICNLSTLLSLPFLSLLPAEKSKSGEGGDARGVEQEEQKME
GYVHETKN*

mRNA from alignment at scaffold_8:660771..662675-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4024 ID=mRNA_4024|Name=jgi.p|Nanoce1779_2|586179|organism=Nannochloropsis oceanica|type=mRNA|length=1905bp|location=Sequence derived from alignment at scaffold_8:660771..662675- (Nannochloropsis oceanica)
CTGGGGTTGACGCAACTTATCCTGGTGTACCACCTAAACACCGGTCTGGG
GATCCCCAACGAGATCTTCACCTTCGGCGACAGTGTAGTGCTGACTGTAC
TCGGCCAGATAGCCTTCATGCCGACGCTGGTCTTGGCTGCGCGTTTGTGT
CCTCCAGGCATTGAGGGGACACTCTTTGCGACGTTGATGAGCGTGTTTAA
CGGTGCGGGGGCTTTGGGCGCAGAGCTGGGGGCATTTTTGACGTCCGCGC
TGGGTGTCACCGAGAATAATTTTCAGAATTTGGGTCTGCTAATCGCCATT
TGCAACCTCAGCACCCTTTTGTCTCTACCATTTTTGTCCTTGCTCCCAGC
GGAAAAAAGCAAGAGTGGCGAAGGGGGCGATGCACGAGGAGTTGAGCAGG
AGGAACAGAAGATGGAGGGATATGTCCACGAGACAAAAAATTAGACCAGT
GTACAGTGAATATTAAAGCATCGCCTGCAAGTAAGCAACAAAAATCAGCT
TAGTGGAAGAACATCGGTGGAATGGCTTTTTTGTATGAGGGGAATTTCTT
TCCCCCCCCCCCAATCAAACTTTGCTATTCTGAAGGCTGCCGCGGGCAGA
ATACCCTTCTCTGATCAGTCAGTCTACCAAAAAGCTCTTGCATAGAGAAT
GGTTCGAGAAGGTTAAAACTTAGGCATAGCTTATTTTGGCACGCGTTTCC
CACTTCCTCATAGCGATTTCGCGTGCACGACTCAACAATTAGACAGGTCT
TTGCTGATACTCAGCAGTGTTTGACCTGTTTCAGGTTTTAAGTGCAGCGC
ACATGCTTGTTGGAGACGTCTGCCTCCGGAAGGGAAAAACTGAAGTCAGG
ACAAATTATAAGGTCATTTTTTAACTTGGTGCTGTACCTGTTATCCATAA
GGTTTACATCTCGATAACATCAGCAGAATCCAACTTGCATCGACATCCAA
TGCTGTTATTACCTATGAGTATGCTCCACAATTCTCATGGCATGAAACTG
GCGGAACGATATCTAGGTTGCGCGCTCAAGTGATCTTTCATTTACTTTCG
TCCCCGAAATAGTGTAGGAGCCACCAGAATGCCATGCAAGTATGCTGGCG
GCAGGCACATGTATTATTTCGACCCTCTCGGGCCAGAGCAAGATGCTGAC
AGCATGCATATGTCGTGACAGAGCTATGTACAAACCGTATGATATTCATG
AAAAGTCCTTTTTTGTCTCCCAGCCTCTGCCCCTGCCCTTGGAATCTTAC
GCAAGTTCATTCGACAAGCATGTTTGTGAACAATCCATGATTCGAGATTT
TGGCGGCTTTTACCAGAGTTGTCCTGCTCATGTCTTGCCATTCTGAGACA
AGCAGCGGTGGGTATTAATTCCAGAAGCCGGATAGAACCTTGAGGGCTGC
GCGGGAAGCCGTGAAGGGTCAACGTATTTCCCTGTTGCTTGGCTTTTCTA
GTATTCTATATGGGAGTGACAAATAAAACGGACATGTAGAATATTAAGGC
TGACTGGAAAAGTTAATAAAGAAAATAGGTAGTACAAAGCATAAGACATG
TATCGAAGTAGAGGAGCATTGTATGTCCTTGCTGCCACACTAGTGCATTG
ACAAACCAACGAGATTCAGAGGTCGGGACGCAACGAACGAAGTGAGGAAC
GACAGAAAGGGCGCCAGTACCACGCCACTGTCGTCTATGCAGGGCCGGAA
CTGGTACGTCTCCACGGTTACTTGGTAGTACTTGTGTCTTGACGCCGATT
ACCAAGTATGACATTGAGAGTACCAATAAGGTTGGGGTAGAGTACGAAGT
ATGTAGGGGTCAAAGTACCCATTGGTACCTCTTATTTCAAGCCATAGTAA
AGAAACAGGGAAATCGGGGGCTCCCCATCACCCCTCTGCTTTACGCACAA
CTTCC

Coding sequence (CDS) from alignment at scaffold_8:660771..662675-

>mRNA_4024 ID=mRNA_4024|Name=jgi.p|Nanoce1779_2|586179|organism=Nannochloropsis oceanica|type=CDS|length=327bp|location=Sequence derived from alignment at scaffold_8:660771..662675- (Nannochloropsis oceanica)
ATGCCGACGCTGGTCTTGGCTGCGCGTTTGTGTCCTCCAGGCATTGAGGG
GACACTCTTTGCGACGTTGATGAGCGTGTTTAACGGTGCGGGGGCTTTGG
GCGCAGAGCTGGGGGCATTTTTGACGTCCGCGCTGGGTGTCACCGAGAAT
AATTTTCAGAATTTGGGTCTGCTAATCGCCATTTGCAACCTCAGCACCCT
TTTGTCTCTACCATTTTTGTCCTTGCTCCCAGCGGAAAAAAGCAAGAGTG
GCGAAGGGGGCGATGCACGAGGAGTTGAGCAGGAGGAACAGAAGATGGAG
GGATATGTCCACGAGACAAAAAATTAG

Synonyms

Publications