jgi.p|Nanoce1779_2|629557, mRNA_3831 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|629557
Unique NamemRNA_3831
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1333
Alignment locationscaffold_8:143632..146038 -

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Properties
Property NameValue
TranscriptId629643
TrackFilteredModels2
ProteinId629557
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_8supercontigscaffold_8:143632..146038 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|629557gene_3831Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|629557mRNA_3831-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_3831CDS_3831Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_3831 ID=mRNA_3831|Name=jgi.p|Nanoce1779_2|629557|organism=Nannochloropsis oceanica|type=mRNA|length=1333bp
GCTACTGTTCGTGGGTGATTTTCCTGCTATGCACAGGCCTTGTTTCGCAC
CGTCACTCTCAACCAACCCACTCCACTACCCACAACCACAGATTAAGATA
AGCGATCCCAGTTACACTGCCCTTTTTCTTAATTGTCTCAAGTGGCCCCC
TGGTTTCGCATCGATTTCCACAACGACTCTCCGACCTCCCACCTCTTCAC
CCGCTCCCATCCACCAGATCATGGGGACCATGACCACCATCACCACCACC
ACCACGGCTAGCACCACCCCCAAATGCACTTTCACTGCCACTGCCGAAGC
CCTGGTCCGCCTACCCGGGGCCGAAACGACCTGGCCTGCCTTCCAAGCCG
CGTTCAGTAACCTCCCCCCTCTCCAGAGGCCACGCGACAGCCGCCTCCGC
CTCCTTTTTCGTGTATATCGAGACTTGAGCGCTAAGACCAGTTGGGAGGA
CGTCAAAGTCGTCTGGAGAGATATATGTGACAGTGGCTCGAAGCGTCACA
CCACTTTTTATGAGGGTGGGGCATATTTTATTGAGGGAATTTTTACTCGT
CGTCCACGCGAGGCACGGGAAGCGGCAGCAGCGGCAGCGAAGAAGAAGAT
GGTGAAAAAGAAGAAGGCCAAGTTTAAAAAGATGATCCAGAAGAAGAAGG
AAGAGAAGAGAATGAAGAGGGAGCAACGTGTGGAGGAGGAGAGGGCGAGG
AGGATGGATGCGGGCGAGGAGGAAGAGGAGGAAGGCGAGGCGGGTGGGGA
GGAGGAAGAGGAGGAAGGGGTGGAAGAAGGAGGGGAAAAAGCTGTTGTCT
ACCCCATGGCCTTCAACGAGTCTCTAGATGCGGGCAAGCTGCTAGCTTTC
TCCGCCTATGCTGCCGGGCGCCGAGAGAAGGAGATAGGAAAGGAGGGAGG
GCTAAGGCTGTCGGTGCCCCCATTATTGATTGCCTTGTGTAATGAGGTGG
AGATAATCTATCAGGAGGTGCGGTTGGGGATCGCTGAGCCAACGGACAAG
GAGGAAAAGCTCAAGAAAACGGTACAGAGTGTAAATAAATAATATGAAAA
TGGAAATAAGGAAATGTTTAGGTGATGATGTAGTGGAATGGAATACCTTT
CTCGTGGCTGTCTTACCCTCGACGTGCTCCCATTGCTTTCATGCATTAGG
AGCATTGCACAAGGCAGAGAGAGGGGGGAAAAGACAACAACATCAAAGAG
GACAGAAAGGGACCTGATGATTGAAAAAATCAGTCACAAATAAAACACGA
CGGACATCCATCTCCCTACTCTTGTACTTTTCAGTCATCACATCCAAAGA
TGACTGCATGCTTGCAATAAAGTCAATCAATCA
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protein sequence of jgi.p|Nanoce1779_2|629557

>mRNA_3831-protein ID=mRNA_3831-protein|Name=jgi.p|Nanoce1779_2|629557|organism=Nannochloropsis oceanica|type=polypeptide|length=338bp
MHRPCFAPSLSTNPLHYPQPQIKISDPSYTALFLNCLKWPPGFASISTTT
LRPPTSSPAPIHQIMGTMTTITTTTTASTTPKCTFTATAEALVRLPGAET
TWPAFQAAFSNLPPLQRPRDSRLRLLFRVYRDLSAKTSWEDVKVVWRDIC
DSGSKRHTTFYEGGAYFIEGIFTRRPREAREAAAAAAKKKMVKKKKAKFK
KMIQKKKEEKRMKREQRVEEERARRMDAGEEEEEEGEAGGEEEEEEGVEE
GGEKAVVYPMAFNESLDAGKLLAFSAYAAGRREKEIGKEGGLRLSVPPLL
IALCNEVEIIYQEVRLGIAEPTDKEEKLKKTVQSVNK*
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mRNA from alignment at scaffold_8:143632..146038-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_3831 ID=mRNA_3831|Name=jgi.p|Nanoce1779_2|629557|organism=Nannochloropsis oceanica|type=mRNA|length=2407bp|location=Sequence derived from alignment at scaffold_8:143632..146038- (Nannochloropsis oceanica)
GCTACTGTTCGTGGGTGATTTTCCTGCTATGCACAGGCCTTGTTTCGCAC
CGTCACTCTCAACCAACCCACTCCACTACCCACAACCACAGATTAAGATA
AGCGATCCCAGTTACACTGCCCTTTTTCTTAATTGTCTCAAGTGGCCCCC
TGGTTTCGCATCGATTTCCACAACGACTCTCCGACCTCCCACCTCTTCAC
CCGCTCCCATCCACCAGATCATGGGGACCATGACCACCATCACCACCACC
ACCACGGCTAGCACCACCCCCAAATGCACTTTCACTGCCACTGCCGAAGC
CCTGGTCCGCCTACCCGGGGCCGAAACGACCTGGCCTGCCTTCCAAGCCG
CGTTCAGTAACCTCCCCCCTCTCCAGAGGCCACGCGACAGCCGCCTCCGC
CTCCTTTTTCGTGTATATCGAGACTTGAGCGCTAAGACCAGTTGGGAGGA
CGTCAAAGTCGTCTGGAGAGATATATGTGACAGTGGCTCGAAGCGTCACA
CCACTTTTTATGAGGGTGGGGCATATTTTATTGAGGGAATTTTTACTCGT
CGTCCACGCGAGGCACGGGAAGCGGCAGCAGCGGCAGCGAAGAAGAAGAT
GGTGAAAAAGAAGAAGGCCAAGTTTAAAAAGATGATCCAGAAGAAGAAGG
AAGAGAAGAGAATGAAGAGGGAGCAACGTGTGGAGGAGGAGAGGGCGAGG
AGGATGGATGCGGGCGAGGAGGAAGAGGAGGAAGGCGAGGCGGGTGGGGA
GGAGGAAGAGGAGGAAGGGGTGGAAGAAGGAGGGGAAAAAGGTAAAAGGG
AATGCCAAGAGAATGGTAAGGTGGGAGGCGAAGGAGAAGATAGGGGGGAG
AAGAGAGCGGCTGAGGCTATGGAAGGAGACGAAGAGACCTTGCAGGCGAC
GGGAAAAGTGGCAAAAGCAGAGGGCGGAAAGGAGGAGGGACAGCAGCAAC
AGGAAAATCAGCAGCACCAGGAGATAGAATATAAAGGCGAGCAGCTGCAA
CAGCAGTACATCGAAGAGAAACAGCAAGCTGAGGGCGATCAAGAGGAGGA
AATGAAGGCAGAGGAAGAGGAGTTGATAGCTATTGTACAGGTGGGTGCGG
AGAGCGAGGAGACTCCTGCAGAAGCAGCAGCATCCGCAACAGCAACCACA
GCAGCAGTAGTAAGAGCATCAACAAGAGCAACAATTGTTACCGCCTTATC
GTCAGCGGCCGAGGTTATTGCGACGTTAGAAGAGGAAGCAGGCATGGTTG
TACCAGCAGCATCAGAAGCAGCAGCAGCAGCAGAGGAAGCAACAGCAGCA
GCAGCATCGGTAACAACAACCGCACCATCACCAATAGCTGAGACCATTAC
TGCCCTGGAACAGGAAGCAGGCATGGTCGTACCAGCAGCGACAGAACCAG
CAGCAGAAGCAACAGAGGCAGCAGAGGTGGCAACAGCAGCGACAGCAGCA
ACAGGAGTAGATGGGAGACCTGTTATCTCTACCCCCTCTTCTCTTCCTCA
AGGAACGAGGTCAATAGAAAAAAATGAAGAAATGGAGCAGGCCATTTATG
ACGACGTGAAAAAAGAGGAGGTAACAGCAGCAACAGCAGCAGCACCAGCA
GCAGCAGTAGTAGTAGCAGCAGCAGCAGCGGCGGATCCTTGTCTTTCCTC
CACTCCCACGCAACTCTCCACCTCTGTCACTGCTTCGTCCCTTCCTCCAT
CTTCTCCTTACCCTCATTCTTTGTCTTCCATCACAAATACCACTATCGGC
AGCACCAAGAAAATAAAACAGCAACAGCAGCAGCAGCAGAAGCAGCAGCA
GTGTCGTGGCTCCCCATCTCCTTCTCCTTCCTTCCCTCCCAATTTCGCCC
TACCCCCTGTACCAGCTGTTGTCTACCCCATGGCCTTCAACGAGTCTCTA
GATGCGGGCAAGCTGCTAGCTTTCTCCGCCTATGCTGCCGGGCGCCGAGA
GAAGGAGATAGGAAAGGAGGGAGGGCTAAGGCTGTCGGTGCCCCCATTAT
TGATTGCCTTGTGTAATGAGGTGGAGATAATCTATCAGGAGGTGCGGTTG
GGGATCGCTGAGCCAACGGACAAGGAGGAAAAGCTCAAGAAAACGGTACA
GAGTGTAAATAAATAATATGAAAATGGAAATAAGGAAATGTTTAGGTGAT
GATGTAGTGGAATGGAATACCTTTCTCGTGGCTGTCTTACCCTCGACGTG
CTCCCATTGCTTTCATGCATTAGGAGCATTGCACAAGGCAGAGAGAGGGG
GGAAAAGACAACAACATCAAAGAGGACAGAAAGGGACCTGATGATTGAAA
AAATCAGTCACAAATAAAACACGACGGACATCCATCTCCCTACTCTTGTA
CTTTTCAGTCATCACATCCAAAGATGACTGCATGCTTGCAATAAAGTCAA
TCAATCA
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Coding sequence (CDS) from alignment at scaffold_8:143632..146038-

>mRNA_3831 ID=mRNA_3831|Name=jgi.p|Nanoce1779_2|629557|organism=Nannochloropsis oceanica|type=CDS|length=2028bp|location=Sequence derived from alignment at scaffold_8:143632..146038- (Nannochloropsis oceanica)
CTGTTGTCTACCCCATGGCCTTCAACGAGTCTCTAGATGCGGGCAAGCTG
CTAGCTTTCTCCGCCTATGCTGCCGGGCGCCGAGAGAAGGAGATAGGAAA
GGAGGGAGGGCTAAGGCTGTCGGTGCCCCCATTATTGATTGCCTTGTGTA
ATGAGGTGGAGATAATCTATCAGGAGGTGCGGTTGGGGATCGCTGAGCCA
ACGGACAAGGAGGAAAAGCTCAAGAAAACGGTACAGAGTGTAAATAAATA
AATGCACAGGCCTTGTTTCGCACCGTCACTCTCAACCAACCCACTCCACT
ACCCACAACCACAGATTAAGATAAGCGATCCCAGTTACACTGCCCTTTTT
CTTAATTGTCTCAAGTGGCCCCCTGGTTTCGCATCGATTTCCACAACGAC
TCTCCGACCTCCCACCTCTTCACCCGCTCCCATCCACCAGATCATGGGGA
CCATGACCACCATCACCACCACCACCACGGCTAGCACCACCCCCAAATGC
ACTTTCACTGCCACTGCCGAAGCCCTGGTCCGCCTACCCGGGGCCGAAAC
GACCTGGCCTGCCTTCCAAGCCGCGTTCAGTAACCTCCCCCCTCTCCAGA
GGCCACGCGACAGCCGCCTCCGCCTCCTTTTTCGTGTATATCGAGACTTG
AGCGCTAAGACCAGTTGGGAGGACGTCAAAGTCGTCTGGAGAGATATATG
TGACAGTGGCTCGAAGCGTCACACCACTTTTTATGAGGGTGGGGCATATT
TTATTGAGGGAATTTTTACTCGTCGTCCACGCGAGGCACGGGAAGCGGCA
GCAGCGGCAGCGAAGAAGAAGATGGTGAAAAAGAAGAAGGCCAAGTTTAA
AAAGATGATCCAGAAGAAGAAGGAAGAGAAGAGAATGAAGAGGGAGCAAC
GTGTGGAGGAGGAGAGGGCGAGGAGGATGGATGCGGGCGAGGAGGAAGAG
GAGGAAGGCGAGGCGGGTGGGGAGGAGGAAGAGGAGGAAGGGGTGGAAGA
AGGAGGGGAAAAAGCTGTTGTCTACCCCATGGCCTTCAACGAGTCTCTAG
ATGCGGGCAAGCTGCTAGCTTTCTCCGCCTATGCTGCCGGGCGCCGAGAG
AAGGAGATAGGAAAGGAGGGAGGGCTAAGGCTGTCGGTGCCCCCATTATT
GATTGCCTTGTGTAATGAGGTGGAGATAATCTATCAGGAGGTGCGGTTGG
GGATCGCTGAGCCAACGGACAAGGAGGAAAAGCTCAAGAAAACGGTACAG
AGTGTAAATAAATAAATGCACAGGCCTTGTTTCGCACCGTCACTCTCAAC
CAACCCACTCCACTACCCACAACCACAGATTAAGATAAGCGATCCCAGTT
ACACTGCCCTTTTTCTTAATTGTCTCAAGTGGCCCCCTGGTTTCGCATCG
ATTTCCACAACGACTCTCCGACCTCCCACCTCTTCACCCGCTCCCATCCA
CCAGATCATGGGGACCATGACCACCATCACCACCACCACCACGGCTAGCA
CCACCCCCAAATGCACTTTCACTGCCACTGCCGAAGCCCTGGTCCGCCTA
CCCGGGGCCGAAACGACCTGGCCTGCCTTCCAAGCCGCGTTCAGTAACCT
CCCCCCTCTCCAGAGGCCACGCGACAGCCGCCTCCGCCTCCTTTTTCGTG
TATATCGAGACTTGAGCGCTAAGACCAGTTGGGAGGACGTCAAAGTCGTC
TGGAGAGATATATGTGACAGTGGCTCGAAGCGTCACACCACTTTTTATGA
GGGTGGGGCATATTTTATTGAGGGAATTTTTACTCGTCGTCCACGCGAGG
CACGGGAAGCGGCAGCAGCGGCAGCGAAGAAGAAGATGGTGAAAAAGAAG
AAGGCCAAGTTTAAAAAGATGATCCAGAAGAAGAAGGAAGAGAAGAGAAT
GAAGAGGGAGCAACGTGTGGAGGAGGAGAGGGCGAGGAGGATGGATGCGG
GCGAGGAGGAAGAGGAGGAAGGCGAGGCGGGTGGGGAGGAGGAAGAGGAG
GAAGGGGTGGAAGAAGGAGGGGAAAAAG
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Synonyms
Publications