jgi.p|Nanoce1779_2|587284, mRNA_4634 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|587284
Unique NamemRNA_4634
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1347
Alignment locationscaffold_9:259141..260487 -

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Properties
Property NameValue
TranscriptId587370
TrackFilteredModels2
ProteinId587284
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_9supercontigscaffold_9:259141..260487 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|587284gene_4634Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|587284mRNA_4634-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_4634CDS_4634Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_4634 ID=mRNA_4634|Name=jgi.p|Nanoce1779_2|587284|organism=Nannochloropsis oceanica|type=mRNA|length=1347bp
ACAGCAACTAGCACTCCAGTACGTAGGCCATGGCACCACCACCAAGAAGA
ATAAGAGGTACTGCTATGCTACTAGCAGGGACGGCTGCTGGTGTTGTCAC
GGCTGCCCTGGGCCTATGCGCTCCGATTGCAAGCGCCTTCATCCCGCATG
CCCTCGTCATCAGCAGACCATCCTCCTCTTCCTCATTATCCTCCTCAACC
CGCAGCAGCCTATTCAGATACGCCACCTCCACGCCCACCCCTCCCCCCTC
CAGCCCACTACAACGTTCTCAGACCAAGTACATACCCAAAGGATGGGACC
GTGAGATGTATCGACCGCCCGACGAAGTCCTCTTTGAATGGCAAGAGCTT
TTGTGCTGCCTCAAATTCATGGAAGAAAAAGATGTCAACGCCGGGATGCT
CGCCCCCGAGACCCGGGATATGATGATTGGGTACGCCGATACCTTGATCA
AGAACGGCTCCCCTGTTCGTACTTTGGAAGGCTTGGCTGAGGCGATGAAG
GGAAGATGGAAGTTGGCATTCACCACGGAAGAGAGGTATAAAATCCTCCC
CCCCGGCACTCGTGTGTATTATGATATCCACCGCGACGACCGCCTCGAGA
ATGTCATGAAGTTTAAAGACAAGTACTGGGAGTCTCTCGTATCCTCCGCA
AAATACAACCTGACGCCACAAGGCCGCCTGGTTTTCGAATTCACTTCCAA
CTACGTCAACATCAACAGCCCCTTCTCCAAGGCAGGCAAACAATGGAAGC
TCCCCCTCCCTCAAAATGTGGGAAATCTAGGCACTGCCTTCGCAGATGTC
AGCTACATGGACGGCGTCATATGGATCGAGAAGATAAGGGACCCTGCGAC
CCAGTCCGTGTTCGTAACAATCTATGAGTATGTTGGGCCGCTGGCAGGGG
AGGAACGATCGTCGCTCCTGTCCTTGACCTCGTCGGCTTCCTCTAAGGCA
GCTGAAGTGACGGGCTTGGCTTCGAGCACACAGTCCTTGGTTTCCTTTTT
GGAGGGGCTAGAGAGGGAGGAGCAGGAGGAGTTGGTGGAGAAGAATAGGA
AGGAGGAGGAGGGGGAGGGAAAGGAGGAGAGGGCGGGGGCCGCTGAGACG
GAGTCGTCGCCATCGTCAAAAGTCTCGGCATGATGATGAATAAGAAGAAG
AATGATTGCAAGAAGGAGTTGTCAGATTAATTAGAAGAAAAGAGTGCATG
GCAGGAAAAGCGAAGAGGGTGTGGTTTCAAATGAGTGAGAGGGAATGGTG
GGAGAAGTCGTGGTATTTGTGAAGAATTTTAAAAATGAAGGAGGAATATG
ATGAGGAATGGGTGAATGCGAAGGAAAGAAGATGAGGAGGACAACGA
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protein sequence of jgi.p|Nanoce1779_2|587284

>mRNA_4634-protein ID=mRNA_4634-protein|Name=jgi.p|Nanoce1779_2|587284|organism=Nannochloropsis oceanica|type=polypeptide|length=368bp
MAPPPRRIRGTAMLLAGTAAGVVTAALGLCAPIASAFIPHALVISRPSSS
SSLSSSTRSSLFRYATSTPTPPPSSPLQRSQTKYIPKGWDREMYRPPDEV
LFEWQELLCCLKFMEEKDVNAGMLAPETRDMMIGYADTLIKNGSPVRTLE
GLAEAMKGRWKLAFTTEERYKILPPGTRVYYDIHRDDRLENVMKFKDKYW
ESLVSSAKYNLTPQGRLVFEFTSNYVNINSPFSKAGKQWKLPLPQNVGNL
GTAFADVSYMDGVIWIEKIRDPATQSVFVTIYEYVGPLAGEERSSLLSLT
SSASSKAAEVTGLASSTQSLVSFLEGLEREEQEELVEKNRKEEEGEGKEE
RAGAAETESSPSSKVSA*
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mRNA from alignment at scaffold_9:259141..260487-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_4634 ID=mRNA_4634|Name=jgi.p|Nanoce1779_2|587284|organism=Nannochloropsis oceanica|type=mRNA|length=1347bp|location=Sequence derived from alignment at scaffold_9:259141..260487- (Nannochloropsis oceanica)
ACAGCAACTAGCACTCCAGTACGTAGGCCATGGCACCACCACCAAGAAGA
ATAAGAGGTACTGCTATGCTACTAGCAGGGACGGCTGCTGGTGTTGTCAC
GGCTGCCCTGGGCCTATGCGCTCCGATTGCAAGCGCCTTCATCCCGCATG
CCCTCGTCATCAGCAGACCATCCTCCTCTTCCTCATTATCCTCCTCAACC
CGCAGCAGCCTATTCAGATACGCCACCTCCACGCCCACCCCTCCCCCCTC
CAGCCCACTACAACGTTCTCAGACCAAGTACATACCCAAAGGATGGGACC
GTGAGATGTATCGACCGCCCGACGAAGTCCTCTTTGAATGGCAAGAGCTT
TTGTGCTGCCTCAAATTCATGGAAGAAAAAGATGTCAACGCCGGGATGCT
CGCCCCCGAGACCCGGGATATGATGATTGGGTACGCCGATACCTTGATCA
AGAACGGCTCCCCTGTTCGTACTTTGGAAGGCTTGGCTGAGGCGATGAAG
GGAAGATGGAAGTTGGCATTCACCACGGAAGAGAGGTATAAAATCCTCCC
CCCCGGCACTCGTGTGTATTATGATATCCACCGCGACGACCGCCTCGAGA
ATGTCATGAAGTTTAAAGACAAGTACTGGGAGTCTCTCGTATCCTCCGCA
AAATACAACCTGACGCCACAAGGCCGCCTGGTTTTCGAATTCACTTCCAA
CTACGTCAACATCAACAGCCCCTTCTCCAAGGCAGGCAAACAATGGAAGC
TCCCCCTCCCTCAAAATGTGGGAAATCTAGGCACTGCCTTCGCAGATGTC
AGCTACATGGACGGCGTCATATGGATCGAGAAGATAAGGGACCCTGCGAC
CCAGTCCGTGTTCGTAACAATCTATGAGTATGTTGGGCCGCTGGCAGGGG
AGGAACGATCGTCGCTCCTGTCCTTGACCTCGTCGGCTTCCTCTAAGGCA
GCTGAAGTGACGGGCTTGGCTTCGAGCACACAGTCCTTGGTTTCCTTTTT
GGAGGGGCTAGAGAGGGAGGAGCAGGAGGAGTTGGTGGAGAAGAATAGGA
AGGAGGAGGAGGGGGAGGGAAAGGAGGAGAGGGCGGGGGCCGCTGAGACG
GAGTCGTCGCCATCGTCAAAAGTCTCGGCATGATGATGAATAAGAAGAAG
AATGATTGCAAGAAGGAGTTGTCAGATTAATTAGAAGAAAAGAGTGCATG
GCAGGAAAAGCGAAGAGGGTGTGGTTTCAAATGAGTGAGAGGGAATGGTG
GGAGAAGTCGTGGTATTTGTGAAGAATTTTAAAAATGAAGGAGGAATATG
ATGAGGAATGGGTGAATGCGAAGGAAAGAAGATGAGGAGGACAACGA
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Coding sequence (CDS) from alignment at scaffold_9:259141..260487-

>mRNA_4634 ID=mRNA_4634|Name=jgi.p|Nanoce1779_2|587284|organism=Nannochloropsis oceanica|type=CDS|length=1104bp|location=Sequence derived from alignment at scaffold_9:259141..260487- (Nannochloropsis oceanica)
ATGGCACCACCACCAAGAAGAATAAGAGGTACTGCTATGCTACTAGCAGG
GACGGCTGCTGGTGTTGTCACGGCTGCCCTGGGCCTATGCGCTCCGATTG
CAAGCGCCTTCATCCCGCATGCCCTCGTCATCAGCAGACCATCCTCCTCT
TCCTCATTATCCTCCTCAACCCGCAGCAGCCTATTCAGATACGCCACCTC
CACGCCCACCCCTCCCCCCTCCAGCCCACTACAACGTTCTCAGACCAAGT
ACATACCCAAAGGATGGGACCGTGAGATGTATCGACCGCCCGACGAAGTC
CTCTTTGAATGGCAAGAGCTTTTGTGCTGCCTCAAATTCATGGAAGAAAA
AGATGTCAACGCCGGGATGCTCGCCCCCGAGACCCGGGATATGATGATTG
GGTACGCCGATACCTTGATCAAGAACGGCTCCCCTGTTCGTACTTTGGAA
GGCTTGGCTGAGGCGATGAAGGGAAGATGGAAGTTGGCATTCACCACGGA
AGAGAGGTATAAAATCCTCCCCCCCGGCACTCGTGTGTATTATGATATCC
ACCGCGACGACCGCCTCGAGAATGTCATGAAGTTTAAAGACAAGTACTGG
GAGTCTCTCGTATCCTCCGCAAAATACAACCTGACGCCACAAGGCCGCCT
GGTTTTCGAATTCACTTCCAACTACGTCAACATCAACAGCCCCTTCTCCA
AGGCAGGCAAACAATGGAAGCTCCCCCTCCCTCAAAATGTGGGAAATCTA
GGCACTGCCTTCGCAGATGTCAGCTACATGGACGGCGTCATATGGATCGA
GAAGATAAGGGACCCTGCGACCCAGTCCGTGTTCGTAACAATCTATGAGT
ATGTTGGGCCGCTGGCAGGGGAGGAACGATCGTCGCTCCTGTCCTTGACC
TCGTCGGCTTCCTCTAAGGCAGCTGAAGTGACGGGCTTGGCTTCGAGCAC
ACAGTCCTTGGTTTCCTTTTTGGAGGGGCTAGAGAGGGAGGAGCAGGAGG
AGTTGGTGGAGAAGAATAGGAAGGAGGAGGAGGGGGAGGGAAAGGAGGAG
AGGGCGGGGGCCGCTGAGACGGAGTCGTCGCCATCGTCAAAAGTCTCGGC
ATGA
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Synonyms
Publications