jgi.p|Nanoce1779_2|629998, mRNA_4766 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|629998
Unique Name	mRNA_4766
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1622
Alignment location	scaffold_9:587560..589380 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	630084
Track	FilteredModels2
ProteinId	629998

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_9	supercontig	scaffold_9:587560..589380 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|629998	gene_4766	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|629998	mRNA_4766-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_4766	CDS_4766	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_9:587560..589380+
coding sequence from alignment at scaffold_9:587560..589380+

mRNA sequence

>mRNA_4766 ID=mRNA_4766|Name=jgi.p|Nanoce1779_2|629998|organism=Nannochloropsis oceanica|type=mRNA|length=1622bp
GCCTGTTTCGGTTTGTTTGTGCAGAGGGACAGGGCAATATCAACGTCAAT
GTACGTGCTTTCGCTGGGAGGCATCGGATAGATAGCAAACGTCGACGCAC
ACCCCTGAGCGAGAAAACGCAGAGTAAAGCTGGAAGAATGAAACCTGTGG
GCGGGTAAGACGGTGGTCCAGCGGCCGCGGTTGGGGAGGAAGCAGCATGC
ACATCGCATGAGAAACGATAGGAAGCGAAGCTGAGGCAGACAGGGAGGAG
GACGAGTTGAAGGGGCTGCTGTCTGCTCTTTTCTCCTTGCCGCTTGTCGG
CAGTTGGGAAGCAGGCGTTCCTATGCCAGTGATCTACCTCCACGTTTTGC
ACAGTTTTTCCTACCTCACACATCATACCATGTACACAATAGTTCGCTTA
CTAAAGTCCCTTCTTTTCTTCCTACACAGGACGTGACCTGGTCGTCCGTC
TGCCGCCAAAGCCAGGCATAGGATTGGAGTCTCTCAGAAAACTGGCCCAT
AGCCTGCTTTGGAAAAACGACGGGTACGACCTATCAGCGGGCAATCACGC
ATGTATTCGGGCGCGATGAAGGGCGAAGACATATATGACGACATTCTGTA
CGTGGATGAAGGGGAGGGAGTGGCGGCAGGGATGGACGAGTCCAGGTTGC
CTGTGGCACCAAGACCGTTTCGAGTCGATGACCGGGGCGGAGGTGGGGAG
AGCAGTGACGAGGATGGGAGCAGCGAGGGCTATCCCGATGAGGAAGAAGA
TGACGATGACGAAGAACTGGACGATGATGCGTATGACTCAGATGTGGACG
ACATGGATGAGGATGATTCGTTGATCTCCGCCTGGGACCGTGAGTTGGGG
ATGACAAGAGGAGGACAAGGGATCCGAGGAGGCTTTGGCGGCGCGCGCCA
AGATTTTCTAGAGCTCTCACATAGCTGCATCAAGGAGGGGGGGGAGTTGA
CCACAGAGTTTTCGTTTGATGTCACCCCGGGTCGGCGGCGGAGCACATTG
CACCAGACGTTTACACAGAGCCTGTTGGAGGAGACCAAGCAACGACAACG
ACAACGAGACAACTTTGAGAGGGAGCGTCTCCGTCGTGCCGTCTTCATCC
TGCAACGCGGCTCCAGCCTGAAGAAGAAGACGGAGCACGAAAAGACGTAC
AAAGATCGTTTTCTTTTCTTGAGCAATGATCTTAAATCCCTGTCTCTGGC
CAAGTCCAGTCAGACGAGACATAAAGCCAAAGTTTTGGTCTCTATCAAGG
GCGGTCTACACGCCACGCGCGGTGGTCCTACCCTCCGCCATCGAAAAGAT
GCTGAGCATGTCACTTTCCACAACACTACCTTTTCGTTGCATATTCCCAA
GGGGAAGGACGTGGGGAGCGTCAGTAGTTACAGTGGTGGACCAGCATCAG
CTCCAGCAGTAGCAGCAACAGCAGCAGCAACAGCAGCAGCAGCGGGAAGT
GAAAAGATTTTAGACATTTGGTGTAGGTCGGATGGAGAGTGTGAGGAGTG
GTTGAAGTACTTACCGTTAATCGTGGAAGCGATGACCAATCCCTCGGTCG
GACCCCGGGAATTGATCTGGAGTGAGGAGGTGGAAGAGGGGGAGGAAGGA
GGGGAGGGAGGAGGAAAAGGCG

protein sequence of jgi.p|Nanoce1779_2|629998

>mRNA_4766-protein ID=mRNA_4766-protein|Name=jgi.p|Nanoce1779_2|629998|organism=Nannochloropsis oceanica|type=polypeptide|length=357bp
MYSGAMKGEDIYDDILYVDEGEGVAAGMDESRLPVAPRPFRVDDRGGGGE
SSDEDGSSEGYPDEEEDDDDEELDDDAYDSDVDDMDEDDSLISAWDRELG
MTRGGQGIRGGFGGARQDFLELSHSCIKEGGELTTEFSFDVTPGRRRSTL
HQTFTQSLLEETKQRQRQRDNFERERLRRAVFILQRGSSLKKKTEHEKTY
KDRFLFLSNDLKSLSLAKSSQTRHKAKVLVSIKGGLHATRGGPTLRHRKD
AEHVTFHNTTFSLHIPKGKDVGSVSSYSGGPASAPAVAATAAATAAAAGS
EKILDIWCRSDGECEEWLKYLPLIVEAMTNPSVGPRELIWSEEVEEGEEG
GEGGGKG

mRNA from alignment at scaffold_9:587560..589380+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_4766 ID=mRNA_4766|Name=jgi.p|Nanoce1779_2|629998|organism=Nannochloropsis oceanica|type=mRNA|length=1821bp|location=Sequence derived from alignment at scaffold_9:587560..589380+ (Nannochloropsis oceanica)
GCCTGTTTCGGTTTGTTTGTGCAGAGGGACAGGGCAATATCAACGTCAAT
GTACGTGCTTTCGCTGGGAGGCATCGGATAGATAGCAAACGTCGACGCAC
ACCCCTGAGCGAGAAAACGCAGAGTAAAGCTGGAAGAATGAAACCTGTGG
GCGGGTAAGACGGTGGTCCAGCGGCCGCGGTTGGGGAGGAAGCAGCATGC
ACATCGCATGAGAAACGATAGGAAGCGAAGCTGAGGCAGACAGGGAGGAG
GACGAGTTGAAGGGGCTGCTGTCTGCTCTTTTCTCCTTGCCGCTTGTCGG
CAGTTGGGAAGCAGGCGTTCCTATGCCAGTGATCTACCTCCACGTTTTGC
ACAGTTTTTCCTACCTCACACATCATACCATGTACACAATAGTTCGCTTA
CTAAAGTCCCTTCTTTTCTTCCTACACAGGACGTGACCTGGTCGTCCGTC
TGCCGCCAAAGCCAGGCATAGGATTGGAGTCTCTCAGAAAACTGGCCCAT
AGCCTGCTTTGGAAAAACGACGGGTACGACCTATCAGCGGGCAATCACGC
ATGTATTCGGGCGCGATGAAGGGCGAAGACATATATGACGACATTCTGTA
CGTGGATGAAGGGGAGGGAGTGGCGGCAGGGATGGACGAGTCCAGGTTGC
CTGTGGCACCAAGACCGTTTCGAGTCGATGACCGGGGCGGAGGTGGGGAG
AGCAGTGACGAGGATGGGAGCAGCGAGGGCTATCCCGATGAGGAAGAAGA
TGACGATGACGAAGAACTGGACGATGATGCGTATGACTCAGATGTGGACG
ACATGGATGAGGATGATTCGTTGATCTCCGCCTGGGACCGTGAGTTGGGG
ATGACAAGAGGAGGACAAGGGATCCGAGGAGGCTTTGGCGGCGCGCGCCA
AGATTTTCTAGAGCTCTCACATAGCTGCATCAAGGAGGGGGGGGAGTTGA
CCACAGAGTTTTCGTTTGATGTCACCCCGGGTCGGCGGCGGAGCACATTG
CACCAGACGTTTACACAGAGCCTGTTGGAGGAGACCAAGCAACGACAACG
ACAACGAGACAACTTTGAGAGGGAGCGTCTCCGTCGTGCCGTCTTCATCC
TGCAACGCGGCTCCAGCCTGAAGAAGAAGACGGAGCACGAAAAGACGTAC
AAAGATCGTTTTCTTTTCTTGAGCAATGATCTTAAATCCCTGTCTCTGGC
CAAGTCCAGTCAGACGAGACATAAAGCCAAAGTAAGTAGACGGGCGATTT
TCCTTCCTTCATTCTCTCCTCTCTCCCTTCCTCCCTTTCTCCATTCCTCC
CTTTCTCTCCCTTCTCATACTGTCCGTTTCATTGTAAAAAGCAAGCTCAT
ATCCATAGCTTTCCCCTGGACTAACGTGTGTCTTCTTTTCTTCCCCTTTC
CCCTCTCACCTCCTCCTCTGTAACCACAAGGTTTTGGTCTCTATCAAGGG
CGGTCTACACGCCACGCGCGGTGGTCCTACCCTCCGCCATCGAAAAGATG
CTGAGCATGTCACTTTCCACAACACTACCTTTTCGTTGCATATTCCCAAG
GGGAAGGACGTGGGGAGCGTCAGTAGTTACAGTGGTGGACCAGCATCAGC
TCCAGCAGTAGCAGCAACAGCAGCAGCAACAGCAGCAGCAGCGGGAAGTG
AAAAGATTTTAGACATTTGGTGTAGGTCGGATGGAGAGTGTGAGGAGTGG
TTGAAGTACTTACCGTTAATCGTGGAAGCGATGACCAATCCCTCGGTCGG
ACCCCGGGAATTGATCTGGAGTGAGGAGGTGGAAGAGGGGGAGGAAGGAG
GGGAGGGAGGAGGAAAAGGCG

Coding sequence (CDS) from alignment at scaffold_9:587560..589380+

>mRNA_4766 ID=mRNA_4766|Name=jgi.p|Nanoce1779_2|629998|organism=Nannochloropsis oceanica|type=CDS|length=2142bp|location=Sequence derived from alignment at scaffold_9:587560..589380+ (Nannochloropsis oceanica)
ATGTATTCGGGCGCGATGAAGGGCGAAGACATATATGACGACATTCTGTA
CGTGGATGAAGGGGAGGGAGTGGCGGCAGGGATGGACGAGTCCAGGTTGC
CTGTGGCACCAAGACCGTTTCGAGTCGATGACCGGGGCGGAGGTGGGGAG
AGCAGTGACGAGGATGGGAGCAGCGAGGGCTATCCCGATGAGGAAGAAGA
TGACGATGACGAAGAACTGGACGATGATGCGTATGACTCAGATGTGGACG
ACATGGATGAGGATGATTCGTTGATCTCCGCCTGGGACCGTGAGTTGGGG
ATGACAAGAGGAGGACAAGGGATCCGAGGAGGCTTTGGCGGCGCGCGCCA
AGATTTTCTAGAGCTCTCACATAGCTGCATCAAGGAGGGGGGGGAGTTGA
CCACAGAGTTTTCGTTTGATGTCACCCCGGGTCGGCGGCGGAGCACATTG
CACCAGACGTTTACACAGAGCCTGTTGGAGGAGACCAAGCAACGACAACG
ACAACGAGACAACTTTGAGAGGGAGCGTCTCCGTCGTGCCGTCTTCATCC
TGCAACGCGGCTCCAGCCTGAAGAAGAAGACGGAGCACGAAAAGACGTAC
AAAGATCGTTTTCTTTTCTTGAGCAATGATCTTAAATCCCTGTCTCTGGC
CAAGTCCAGTCAGACGAGACATAAAGCCAAAGTTTTGGTCTCTATCAAGG
GCGGTCTACACGCCACGCGCGGTGGTCCTACCCTCCGCCATCGAAAAGAT
GCTGAGCATGTCACTTTCCACAACACTACCTTTTCGTTGCATATTCCCAA
GGGGAAGGACGTGGGGAGCGTCAGTAGTTACAGTGGTGGACCAGCATCAG
CTCCAGCAGTAGCAGCAACAGCAGCAGCAACAGCAGCAGCAGCGGGAAGT
GAAAAGATTTTAGACATTTGGTGTAGGTCGGATGGAGAGTGTGAGGAGTG
GTTGAAGTACTTACCGTTAATCGTGGAAGCGATGACCAATCCCTCGGTCG
GACCCCGGGAATTGATCTGGAGTGAGGAGGTGGAAGAGGGGGAGGAAGGA
GGGGAGGGAGGAGGAAAAGGCATGTATTCGGGCGCGATGAAGGGCGAAGA
CATATATGACGACATTCTGTACGTGGATGAAGGGGAGGGAGTGGCGGCAG
GGATGGACGAGTCCAGGTTGCCTGTGGCACCAAGACCGTTTCGAGTCGAT
GACCGGGGCGGAGGTGGGGAGAGCAGTGACGAGGATGGGAGCAGCGAGGG
CTATCCCGATGAGGAAGAAGATGACGATGACGAAGAACTGGACGATGATG
CGTATGACTCAGATGTGGACGACATGGATGAGGATGATTCGTTGATCTCC
GCCTGGGACCGTGAGTTGGGGATGACAAGAGGAGGACAAGGGATCCGAGG
AGGCTTTGGCGGCGCGCGCCAAGATTTTCTAGAGCTCTCACATAGCTGCA
TCAAGGAGGGGGGGGAGTTGACCACAGAGTTTTCGTTTGATGTCACCCCG
GGTCGGCGGCGGAGCACATTGCACCAGACGTTTACACAGAGCCTGTTGGA
GGAGACCAAGCAACGACAACGACAACGAGACAACTTTGAGAGGGAGCGTC
TCCGTCGTGCCGTCTTCATCCTGCAACGCGGCTCCAGCCTGAAGAAGAAG
ACGGAGCACGAAAAGACGTACAAAGATCGTTTTCTTTTCTTGAGCAATGA
TCTTAAATCCCTGTCTCTGGCCAAGTCCAGTCAGACGAGACATAAAGCCA
AAGTTTTGGTCTCTATCAAGGGCGGTCTACACGCCACGCGCGGTGGTCCT
ACCCTCCGCCATCGAAAAGATGCTGAGCATGTCACTTTCCACAACACTAC
CTTTTCGTTGCATATTCCCAAGGGGAAGGACGTGGGGAGCGTCAGTAGTT
ACAGTGGTGGACCAGCATCAGCTCCAGCAGTAGCAGCAACAGCAGCAGCA
ACAGCAGCAGCAGCGGGAAGTGAAAAGATTTTAGACATTTGGTGTAGGTC
GGATGGAGAGTGTGAGGAGTGGTTGAAGTACTTACCGTTAATCGTGGAAG
CGATGACCAATCCCTCGGTCGGACCCCGGGAATTGATCTGGAGTGAGGAG
GTGGAAGAGGGGGAGGAAGGAGGGGAGGGAGGAGGAAAAGGC

Synonyms

Publications