EWM20422.1, cds10251 (CDS) Nannochloropsis gaditana

Overview
NameEWM20422.1
Unique Namecds10251
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037269.1:25134..25250 -
Alignment locationKK037269.1:24799..24885 -
Alignment locationKK037269.1:24475..24723 -
Alignment locationKK037269.1:24197..24292 -
Alignment locationKK037269.1:23924..24034 -
Alignment locationKK037269.1:23672..23744 -
Alignment locationKK037269.1:23363..23445 -
Alignment locationKK037269.1:23084..23184 -
Alignment locationKK037269.1:22821..22881 -
Alignment locationKK037269.1:22696..22749 -
Alignment locationKK037269.1:22351..22488 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM20422.1
Productactivator 1 37 kda subunit
Orig transcript idgnl|cribi|Naga_100413g2.5435.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037269.1supercontigKK037269.1:25134..25250 -
KK037269.1supercontigKK037269.1:24799..24885 -
KK037269.1supercontigKK037269.1:24475..24723 -
KK037269.1supercontigKK037269.1:24197..24292 -
KK037269.1supercontigKK037269.1:23924..24034 -
KK037269.1supercontigKK037269.1:23672..23744 -
KK037269.1supercontigKK037269.1:23363..23445 -
KK037269.1supercontigKK037269.1:23084..23184 -
KK037269.1supercontigKK037269.1:22821..22881 -
KK037269.1supercontigKK037269.1:22696..22749 -
KK037269.1supercontigKK037269.1:22351..22488 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006259DNA metabolic process
GO:0009058biosynthetic process
GO:0006260DNA replication
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
Vocabulary: INTERPRO
TermDefinition
IPR008921DNA_pol3_clamp-load_cplx_C
IPR027417P-loop_NTPase
IPR013748Rep_factorC_C_dom
IPR003593AAA+_ATPase
Homology
BLAST of EWM20422.1 vs. NCBI_GenBank
Match: gi|585100018|gb|EWM20422.1| (activator 1 37 kda subunit [Nannochloropsis gaditana])

HSP 1 Score: 807.749 bits (2085), Expect = 0.000e+0
Identity = 389/389 (100.00%), Postives = 389/389 (100.00%), Query Frame = 0
Query:    1 MATAAAASSGTLPNVQGEKDAPPGLLPWVEKYRPVTLNDVVGNTEAIDRLKVVAQDGNMPHMLLAGPPGTGKTSSIVCLSRELLGEEHLGASSLLSLPYSRPCKVFTAAFPFSFVLPLPIPTGAAVLELNASDERGIDVIRSRIKMFAQKKVVLPPGRHKVVILDEADSMTSAAQQALRRTMEIYSHTTRFALACNTSSKIIEPIQSRCAILRFSRLADEEILDRLRQICEAEHVGFSDDGLEAVIFTAEGDMRNAINNLQSTYSGFGYVNQANVFKVCDQPHPLLMKEVLDLCAGSGDLKAAQEKLLRVWNLGYSASDIVGTLFKVCRNHGTMNEGTKLNFIREIGMVHMRIAEGLNSRTQILGLLAKLCALQHKQQQQHENGKGQSN 389
            MATAAAASSGTLPNVQGEKDAPPGLLPWVEKYRPVTLNDVVGNTEAIDRLKVVAQDGNMPHMLLAGPPGTGKTSSIVCLSRELLGEEHLGASSLLSLPYSRPCKVFTAAFPFSFVLPLPIPTGAAVLELNASDERGIDVIRSRIKMFAQKKVVLPPGRHKVVILDEADSMTSAAQQALRRTMEIYSHTTRFALACNTSSKIIEPIQSRCAILRFSRLADEEILDRLRQICEAEHVGFSDDGLEAVIFTAEGDMRNAINNLQSTYSGFGYVNQANVFKVCDQPHPLLMKEVLDLCAGSGDLKAAQEKLLRVWNLGYSASDIVGTLFKVCRNHGTMNEGTKLNFIREIGMVHMRIAEGLNSRTQILGLLAKLCALQHKQQQQHENGKGQSN
Sbjct:    1 MATAAAASSGTLPNVQGEKDAPPGLLPWVEKYRPVTLNDVVGNTEAIDRLKVVAQDGNMPHMLLAGPPGTGKTSSIVCLSRELLGEEHLGASSLLSLPYSRPCKVFTAAFPFSFVLPLPIPTGAAVLELNASDERGIDVIRSRIKMFAQKKVVLPPGRHKVVILDEADSMTSAAQQALRRTMEIYSHTTRFALACNTSSKIIEPIQSRCAILRFSRLADEEILDRLRQICEAEHVGFSDDGLEAVIFTAEGDMRNAINNLQSTYSGFGYVNQANVFKVCDQPHPLLMKEVLDLCAGSGDLKAAQEKLLRVWNLGYSASDIVGTLFKVCRNHGTMNEGTKLNFIREIGMVHMRIAEGLNSRTQILGLLAKLCALQHKQQQQHENGKGQSN 389          
BLAST of EWM20422.1 vs. NCBI_GenBank
Match: gi|553189432|ref|XP_005855000.1| (replication factor C subunit 2/4 [Nannochloropsis gaditana CCMP526] >gi|422294054|gb|EKU21354.1| replication factor C subunit 2/4 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 769.229 bits (1985), Expect = 0.000e+0
Identity = 386/456 (84.65%), Postives = 386/456 (84.65%), Query Frame = 0
Query:    1 MATAAAASSGTLPNVQGEKDAPPGLLPWVEKYRPVTLNDVVGNTEAIDRLKVVAQDGNMPHMLLAGPP-------------------------GTGKTSSIVCLSRELLGEEHLGASSLLSLPYSRPCKVFTAAFPFSFVLPLPIPTGAAVLELNASDERGIDVIRSRIKMFAQKKVVLPPGRHKVVILDEADSMTSAAQQALRRTMEIYSHTTRFALACNTSSKIIEPIQSRCAILRFSRLADE------------------------------------------EILDRLRQICEAEHVGFSDDGLEAVIFTAEGDMRNAINNLQSTYSGFGYVNQANVFKVCDQPHPLLMKEVLDLCAGSGDLKAAQEKLLRVWNLGYSASDIVGTLFKVCRNHGTMNEGTKLNFIREIGMVHMRIAEGLNSRTQILGLLAKLCALQHKQQQQHENGKGQSN 389
            MATAAAASSGTLPNVQGEKDAPPGLLPWVEKYRPVTLNDVVGNTEAIDRLKVVAQDGNMPHMLLAGPP                         GTGKTSSIVCLSRELLGEEHLGASSLLSLPYSRPCKVFT AFPFSFVLPL I TGAAVLELNASDERGIDVIRSRIKMFAQKKVVLPPGRHKVVILDEADSMTSAAQQALRRTMEIYSHTTRFALACNTSSKIIEPIQSRCAILRFSRLADE                                          EILDRLRQICEAEHVGFSDDGLEAVIFTAEGDMRNAINNLQSTYSGFGYVNQANVFKVCDQPHPLLMKEVLDLCAGSGDLKAAQEKLLRVWNLGYSASDIVGTLFKVCRNHGTMNEGTKLNFIREIGMVHMRIAEGLNSRTQILGLLAKLCALQHKQQQQHENGKGQSN
Sbjct:    1 MATAAAASSGTLPNVQGEKDAPPGLLPWVEKYRPVTLNDVVGNTEAIDRLKVVAQDGNMPHMLLAGPPVRLVARITTFSSSSHILSASLPPLQGTGKTSSIVCLSRELLGEEHLGASSLLSLPYSRPCKVFTPAFPFSFVLPLAISTGAAVLELNASDERGIDVIRSRIKMFAQKKVVLPPGRHKVVILDEADSMTSAAQQALRRTMEIYSHTTRFALACNTSSKIIEPIQSRCAILRFSRLADEILSLPVSLVKSSARTSRGKRVDSLPSRSSPAFPASPSPSIAQEILDRLRQICEAEHVGFSDDGLEAVIFTAEGDMRNAINNLQSTYSGFGYVNQANVFKVCDQPHPLLMKEVLDLCAGSGDLKAAQEKLLRVWNLGYSASDIVGTLFKVCRNHGTMNEGTKLNFIREIGMVHMRIAEGLNSRTQILGLLAKLCALQHKQQQQHENGKGQSN 456          
BLAST of EWM20422.1 vs. NCBI_GenBank
Match: gi|299471716|emb|CBN76937.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 439.499 bits (1129), Expect = 3.315e-151
Identity = 205/352 (58.24%), Postives = 268/352 (76.14%), Query Frame = 0
Query:   26 LPWVEKYRPVTLNDVVGNTEAIDRLKVVAQDGNMPHMLLAGPPGTGKTSSIVCLSRELLGEEHLGASSLLSLPYSRPCKVFTAAFPFSFVLPLPIPTGAAVLELNASDERGIDVIRSRIKMFAQKKVVLPPGRHKVVILDEADSMTSAAQQALRRTMEIYSHTTRFALACNTSSKIIEPIQSRCAILRFSRLADEEILDRLRQICEAEHVGFSDDGLEAVIFTAEGDMRNAINNLQSTYSGFGYVNQANVFKVCDQPHPLLMKEVLDLCAGSGDLKAAQEKLLRVWNLGYSASDIVGTLFKVCRNHGTMNEGTKLNFIREIGMVHMRIAEGLNSRTQILGLLAKLCALQHKQ 377
            +PWVEKYRP  L+DVVGN + +DRLKV+A++GNMP++++ GPPGTGKT+S+  L+  +LG+ +                                    AVLELNASD RGI+V+R+ IKMF QKKV LPPG+HKV+ILDEADSMT++AQQALRRTMEIYSHTTRFALACN S+KIIEPIQSRCAILRFSRL++EEIL RL+Q+CEAE V +S DGLEA+IFTAEGDMRNA+NNLQ+T+SGFG+V+QANVFKVCDQPHP ++ E+L  C   GD   A  ++  +++ GYS++DI+GT+F+VC+N   +NEG KL  I+E+G  H+R+A+G+NS  Q++G+ A+LC +  +Q
Sbjct:   10 VPWVEKYRPNKLDDVVGNEQTLDRLKVIAEEGNMPNVIICGPPGTGKTTSVHALAHTMLGDAY----------------------------------ANAVLELNASDSRGIEVVRNTIKMFTQKKVTLPPGQHKVIILDEADSMTASAQQALRRTMEIYSHTTRFALACNVSTKIIEPIQSRCAILRFSRLSEEEILLRLQQVCEAEQVSYSPDGLEAIIFTAEGDMRNALNNLQATHSGFGHVDQANVFKVCDQPHPGVVLEILKSCV-EGDCAKASRRMKALYDTGYSSNDIIGTVFRVCKNQLEVNEGAKLEMIKEVGFTHVRVADGVNSLLQLMGMCARLCRVAQQQ 326          
BLAST of EWM20422.1 vs. NCBI_GenBank
Match: gi|1023262610|gb|KZT57854.1| (P-loop containing nucleoside triphosphate hydrolase protein [Calocera cornea HHB12733])

HSP 1 Score: 431.409 bits (1108), Expect = 6.137e-148
Identity = 213/370 (57.57%), Postives = 266/370 (71.89%), Query Frame = 0
Query:    7 ASSGTLPNVQGEKDAPPGLLPWVEKYRPVTLNDVVGNTEAIDRLKVVAQDGNMPHMLLAGPPGTGKTSSIVCLSRELLGEEHLGASSLLSLPYSRPCKVFTAAFPFSFVLPLPIPTGAAVLELNASDERGIDVIRSRIKMFAQKKVVLPPGRHKVVILDEADSMTSAAQQALRRTMEIYSHTTRFALACNTSSKIIEPIQSRCAILRFSRLADEEILDRLRQICEAEHVGFSDDGLEAVIFTAEGDMRNAINNLQSTYSGFGYVNQANVFKVCDQPHPLLMKEVLDLCAGSGDLKAAQEKLLRVWNLGYSASDIVGTLFKVCRNHGTMNEGTKLNFIREIGMVHMRIAEGLNSRTQILGLLAKLCALQHK 376
            ASS       G+   P   +PWVEKYRP  L+DVVGN + IDRLKV+A+DGN PH++++G PG GKT+SI CL+  LLG+ +                                     VLELNASDERGIDV+R++IK FAQKKV LPPGRHK++ILDEADSMTS AQQALRRTMEIYS+TTRFALACN S+KIIEPIQSRCAILR+++L D+E+L RL +ICEAE V ++D+GL A+IFTAEGDMR AINNLQST+SGFG+VN  NVFKVCDQPHP+L++ +L  C   GD+ +A EKL  +W+ GYSA DIV TLF+V +    + E TKL +IREIG  HMR+ EG+ ++ Q+ GL+A+LC +  K
Sbjct:    3 ASSKGKEVANGKAPEPTYEMPWVEKYRPKVLDDVVGNADTIDRLKVIARDGNCPHIIISGMPGIGKTTSIHCLAHALLGDAY----------------------------------KEGVLELNASDERGIDVVRNKIKSFAQKKVTLPPGRHKIIILDEADSMTSGAQQALRRTMEIYSNTTRFALACNQSNKIIEPIQSRCAILRYTKLRDQEVLKRLLEICEAEKVKYNDEGLTALIFTAEGDMRQAINNLQSTWSGFGFVNGDNVFKVCDQPHPVLIQGMLRSCH-KGDIGSAMEKLDELWDQGYSAVDIVVTLFRVTKTFNDLPEYTKLEYIREIGWTHMRVLEGVGTKMQLAGLVARLCKMNMK 337          
BLAST of EWM20422.1 vs. NCBI_GenBank
Match: gi|1021803584|gb|KZO95895.1| (P-loop containing nucleoside triphosphate hydrolase protein [Calocera viscosa TUFC12733])

HSP 1 Score: 430.254 bits (1105), Expect = 1.810e-147
Identity = 211/360 (58.61%), Postives = 262/360 (72.78%), Query Frame = 0
Query:   17 GEKDAPPGLLPWVEKYRPVTLNDVVGNTEAIDRLKVVAQDGNMPHMLLAGPPGTGKTSSIVCLSRELLGEEHLGASSLLSLPYSRPCKVFTAAFPFSFVLPLPIPTGAAVLELNASDERGIDVIRSRIKMFAQKKVVLPPGRHKVVILDEADSMTSAAQQALRRTMEIYSHTTRFALACNTSSKIIEPIQSRCAILRFSRLADEEILDRLRQICEAEHVGFSDDGLEAVIFTAEGDMRNAINNLQSTYSGFGYVNQANVFKVCDQPHPLLMKEVLDLCAGSGDLKAAQEKLLRVWNLGYSASDIVGTLFKVCRNHGTMNEGTKLNFIREIGMVHMRIAEGLNSRTQILGLLAKLCALQHK 376
            G+   P   +PWVEKYRP  L DVVGN + IDRLKV+A+DGN PH++++G PG GKT+SI CL+  LLG+ +                                     VLELNASDERGIDV+R++IK FAQKKV LPPGRHK++ILDEADSMTS AQQALRRTMEIYS+TTRFALACN S+KIIEPIQSRCAILR+S+L D+E+L RL +ICEAE V ++D+GL A+IFTAEGDMR AINNLQST+SGFG+VN  NVFKVCDQPHP+L++ +L  C   GD+++A EKL  +W+ GYSA DIV TLF+V +    + E TKL  IREIG  HMR+ EG+ ++ Q+ GL+A+LC +  K
Sbjct:   13 GKATEPAYEMPWVEKYRPKVLEDVVGNVDTIDRLKVIARDGNCPHIIISGMPGIGKTTSIHCLAHALLGDAY----------------------------------KEGVLELNASDERGIDVVRNKIKSFAQKKVTLPPGRHKIIILDEADSMTSGAQQALRRTMEIYSNTTRFALACNQSNKIIEPIQSRCAILRYSKLKDQEVLKRLLEICEAEKVQYNDEGLTALIFTAEGDMRQAINNLQSTWSGFGFVNGDNVFKVCDQPHPVLIQGMLRNCH-KGDIQSAMEKLDELWDQGYSAVDIVVTLFRVTKTFNELPEYTKLECIREIGWTHMRVLEGVGTKMQLAGLVARLCKMNMK 337          
BLAST of EWM20422.1 vs. NCBI_GenBank
Match: gi|1018893661|dbj|GAT48447.1| (predicted protein [Mycena chlorophos])

HSP 1 Score: 416.001 bits (1068), Expect = 1.028e-141
Identity = 205/351 (58.40%), Postives = 259/351 (73.79%), Query Frame = 0
Query:   26 LPWVEKYRPVTLNDVVGNTEAIDRLKVVAQDGNMPHMLLAGPPGTGKTSSIVCLSRELLGEEHLGASSLLSLPYSRPCKVFTAAFPFSFVLPLPIPTGAAVLELNASDERGIDVIRSRIKMFAQKKVVLPPGRHKVVILDEADSMTSAAQQALRRTMEIYSHTTRFALACNTSSKIIEPIQSRCAILRFSRLADEEILDRLRQICEAEHVGFSDDGLEAVIFTAEGDMRNAINNLQSTYSGFGYVNQANVFKVCDQPHPLLMKEVLDLCAGSGDLKAAQEKLLRVWNLGYSASDIVGTLFKVCRNHGTMNEGTKLNFIREIGMVHMRIAEGLNSRTQILGLLAKLCALQHK 376
            LPWVEKYRPV L+DVVGN++ I+RLKV+A+DGN PH++++G PG GKT+SI CL+ +LLG+ +      L+    R   V       +F          A  +LNASDERGIDV+R++IK FAQKKV LP GRHK+VILDEADSMT  AQQALRRTMEIYS+TTRF LACN S+KIIEPIQSRCAILR+++L D+EIL RL +ICE E V  SDDGL A+IFT+EGDMR AINNLQST+SGFG+V+  NVFKVCDQPHP++++  +  C   GD+  A EKL  +W  GYSA DI+ T+F+V +    M E TKL +I+EIG  HMRI EG+ +  Q+ GL+++LC +  K
Sbjct:   10 LPWVEKYRPVVLDDVVGNSDTIERLKVIAKDGNCPHIIISGMPGIGKTTSIHCLAHQLLGDAYKEGVLELNASDERGIDVVRNKIK-TF----------AQKKLNASDERGIDVVRNKIKTFAQKKVTLPKGRHKIVILDEADSMTPGAQQALRRTMEIYSNTTRFCLACNMSNKIIEPIQSRCAILRYAKLRDQEILRRLIEICEMEKVEHSDDGLTALIFTSEGDMRQAINNLQSTHSGFGFVSGDNVFKVCDQPHPIVVQATIRACM-KGDIATAMEKLNELWEQGYSAVDIIVTIFRVVKTFDEMPEYTKLEYIKEIGFTHMRILEGVGTLLQLAGLISRLCKMNLK 348          
BLAST of EWM20422.1 vs. NCBI_GenBank
Match: gi|686624696|gb|KGB76430.1| (replication factor C subunit 2/4 [Cryptococcus gattii VGII R265] >gi|757321504|gb|KIR27589.1| replication factor C subunit 2/4 [Cryptococcus gattii VGII LA55] >gi|757327272|gb|KIR33325.1| replication factor C subunit 2/4 [Cryptococcus gattii VGII MMRL2647] >gi|757335906|gb|KIR41931.1| replication factor C subunit 2/4 [Cryptococcus gattii VGII Ram5] >gi|757367445|gb|KIR73244.1| replication factor C subunit 2/4 [Cryptococcus gattii VGII CA1014] >gi|757386252|gb|KIR91579.1| replication factor C subunit 2/4 [Cryptococcus gattii VGII CBS 10090] >gi|757393700|gb|KIR99000.1| replication factor C subunit 2/4 [Cryptococcus gattii VGII 2001/935-1] >gi|761939174|gb|KIY59955.1| replication factor C subunit 2/4 [Cryptococcus gattii VGII 99/473])

HSP 1 Score: 414.075 bits (1063), Expect = 4.728e-141
Identity = 199/370 (53.78%), Postives = 266/370 (71.89%), Query Frame = 0
Query:    1 MATAAAASSGTLPNVQGEKDAPPGLLPWVEKYRPVTLNDVVGNTEAIDRLKVVAQDGNMPHMLLAGPPGTGKTSSIVCLSRELLGEEHLGASSLLSLPYSRPCKVFTAAFPFSFVLPLPIPTGAAVLELNASDERGIDVIRSRIKMFAQKKVVLPPGRHKVVILDEADSMTSAAQQALRRTMEIYSHTTRFALACNTSSKIIEPIQSRCAILRFSRLADEEILDRLRQICEAEHVGFSDDGLEAVIFTAEGDMRNAINNLQSTYSGFGYVNQANVFKVCDQPHPLLMKEVLDLCAGSGDLKAAQEKLLRVWNLGYSASDIVGTLFKVCRNHGTMNEGTKLNFIREIGMVHMRIAEGLNSRTQILGLLAKL 370
            MA+ +++++  +       DA    +PWVEKYRPV L+D+VGN++ I+RLKV+A+DGN+PH++++G PG GKT+SI CL+  LLGE +                                     VLELNASDERGIDV+R++IK FAQ+KV LPPGRHK++ILDEADSMT+ AQQALRRTMEIYS+TTRFALACN S+KIIEPIQSRCAILR+S+L D E+L RL++IC+ E V ++D+GL A+IFTAEGDMR AINNLQST+SGFG+VNQ NVFK+CDQPHP+++++++  C   G +  A  ++  +W+ GYSA DIV T+F+V +    + E  KL FIREIG  HMRI EG+ +  Q+  ++A+L
Sbjct:    1 MASGSSSNNKDISATAKHTDAEGYEMPWVEKYRPVLLDDIVGNSDTIERLKVIAEDGNLPHIIISGMPGIGKTTSIHCLAHALLGEAY----------------------------------KEGVLELNASDERGIDVVRNKIKSFAQRKVTLPPGRHKIIILDEADSMTAGAQQALRRTMEIYSNTTRFALACNMSNKIIEPIQSRCAILRYSKLNDAEVLKRLKEICDMESVKYNDEGLAALIFTAEGDMRQAINNLQSTWSGFGFVNQDNVFKICDQPHPIVIRQMIKDCQ-YGKIDEALARVNALWDQGYSAVDIVVTVFRVVKGMEELPEYLKLEFIREIGWTHMRILEGVGTLVQLGAMIARL 335          
BLAST of EWM20422.1 vs. NCBI_GenBank
Match: gi|799336210|ref|XP_012051184.1| (replication factor C subunit 2/4 [Cryptococcus neoformans var. grubii H99] >gi|405121785|gb|AFR96553.1| replication factor C subunit 2/4 [Cryptococcus neoformans var. grubii H99] >gi|1214832755|gb|OWZ67335.1| hypothetical protein AYX15_01639 [Cryptococcus neoformans var. grubii] >gi|1214839361|gb|OWZ73785.1| hypothetical protein AYX14_00735 [Cryptococcus neoformans var. grubii])

HSP 1 Score: 414.075 bits (1063), Expect = 5.048e-141
Identity = 199/373 (53.35%), Postives = 267/373 (71.58%), Query Frame = 0
Query:    1 MATAAAASSGTLPNVQGEKDAPPGLLPWVEKYRPVTLNDVVGNTEAIDRLKVVAQDGNMPHMLLAGPPGTGKTSSIVCLSRELLGEEHLGASSLLSLPYSRPCKVFTAAFPFSFVLPLPIPTGAAVLELNASDERGIDVIRSRIKMFAQKKVVLPPGRHKVVILDEADSMTSAAQQALRRTMEIYSHTTRFALACNTSSKIIEPIQSRCAILRFSRLADEEILDRLRQICEAEHVGFSDDGLEAVIFTAEGDMRNAINNLQSTYSGFGYVNQANVFKVCDQPHPLLMKEVLDLCAGSGDLKAAQEKLLRVWNLGYSASDIVGTLFKVCRNHGTMNEGTKLNFIREIGMVHMRIAEGLNSRTQILGLLAKLCAL 373
            MA+ +++++  +       DA    +PWVEKYRPV L+D+VGN++ IDRLKV+A+DGN+PH++++G PG GKT+SI CL+  LLGE +                                     VLELNASDERGIDV+R++IK FAQ+KV LPPGRHK++ILDEADSMT+ AQQALRRTMEIYS+TTRFALACN S+KIIEPIQSRCAILR+S+L D E+L RL++IC+ E + ++D+GL A+IFTAEGDMR AINNLQST+SGFG+VNQ NVFK+CDQPHP+++++++  C   G +  A  ++  +W+ GYSA DIV T+F+V +    + E  KL FIREIG  HMR+ EG+ +  Q+  ++A+L  L
Sbjct:    1 MASRSSSNNKGISATAKHIDAEGYEMPWVEKYRPVLLDDIVGNSDTIDRLKVIAEDGNVPHIIISGMPGIGKTTSIHCLAHALLGEAY----------------------------------KEGVLELNASDERGIDVVRNKIKSFAQRKVTLPPGRHKIIILDEADSMTAGAQQALRRTMEIYSNTTRFALACNMSNKIIEPIQSRCAILRYSKLNDAEVLKRLKEICDMESIKYNDEGLAALIFTAEGDMRQAINNLQSTWSGFGFVNQDNVFKICDQPHPIVIRQMIKDCQ-HGKIDEALARINALWDQGYSAVDIVVTVFRVVKGMEELPEYLKLEFIREIGWTHMRVLEGVGTLVQLGAMIARLTKL 338          
BLAST of EWM20422.1 vs. NCBI_GenBank
Match: gi|1062145269|gb|ODN91916.1| (replication factor C subunit 2/4 [Cryptococcus depauperatus CBS 7841])

HSP 1 Score: 414.075 bits (1063), Expect = 5.692e-141
Identity = 198/373 (53.08%), Postives = 262/373 (70.24%), Query Frame = 0
Query:    1 MATAAAASSGTLPNVQGEKDAPPGLLPWVEKYRPVTLNDVVGNTEAIDRLKVVAQDGNMPHMLLAGPPGTGKTSSIVCLSRELLGEEHLGASSLLSLPYSRPCKVFTAAFPFSFVLPLPIPTGAAVLELNASDERGIDVIRSRIKMFAQKKVVLPPGRHKVVILDEADSMTSAAQQALRRTMEIYSHTTRFALACNTSSKIIEPIQSRCAILRFSRLADEEILDRLRQICEAEHVGFSDDGLEAVIFTAEGDMRNAINNLQSTYSGFGYVNQANVFKVCDQPHPLLMKEVLDLCAGSGDLKAAQEKLLRVWNLGYSASDIVGTLFKVCRNHGTMNEGTKLNFIREIGMVHMRIAEGLNSRTQILGLLAKLCAL 373
            M TA+++            DA    +PWVEKYRPV L+D+VGNT+ ++RLKV+A+DGN+PH++++G PG GKT+SI CL+  LLG  +                                     VLELNASDERGIDV+R++IK FAQ+KV LPPGRHK++ILDEADSMT+ AQQALRRTMEIYS+TTRFA ACN S+KIIEPIQSRCAILR+S+L+D E+L RL+++CE E V ++D GL A+IFTAEGDMR AINNLQST+SGFG+VNQ NVFK+CDQPHPL++++++  C   G +  A  ++  +W+ GYSA DIV T+F+V +    + E  KL FIRE+G  HMR+ EG+ +  Q+  ++A+LC  
Sbjct:    1 MTTASSSKDTGTSATAKHADAEGYEMPWVEKYRPVLLDDIVGNTDTVERLKVIAEDGNVPHIIISGMPGIGKTTSIHCLAHALLGPAY----------------------------------KEGVLELNASDERGIDVVRNKIKSFAQRKVTLPPGRHKIIILDEADSMTAGAQQALRRTMEIYSNTTRFAFACNMSNKIIEPIQSRCAILRYSKLSDVEVLKRLKEVCEMESVKYNDQGLAALIFTAEGDMRQAINNLQSTWSGFGFVNQDNVFKICDQPHPLVIRQMIKNCQ-KGQVDEALARINALWDQGYSAVDIVVTIFRVVKGMEELPEYLKLEFIREVGWTHMRVLEGVGTLVQLGAMIARLCKF 338          
BLAST of EWM20422.1 vs. NCBI_GenBank
Match: gi|1062147761|gb|ODN94397.1| (replication factor C subunit 2/4 [Cryptococcus depauperatus CBS 7855])

HSP 1 Score: 412.92 bits (1060), Expect = 1.263e-140
Identity = 197/373 (52.82%), Postives = 263/373 (70.51%), Query Frame = 0
Query:    1 MATAAAASSGTLPNVQGEKDAPPGLLPWVEKYRPVTLNDVVGNTEAIDRLKVVAQDGNMPHMLLAGPPGTGKTSSIVCLSRELLGEEHLGASSLLSLPYSRPCKVFTAAFPFSFVLPLPIPTGAAVLELNASDERGIDVIRSRIKMFAQKKVVLPPGRHKVVILDEADSMTSAAQQALRRTMEIYSHTTRFALACNTSSKIIEPIQSRCAILRFSRLADEEILDRLRQICEAEHVGFSDDGLEAVIFTAEGDMRNAINNLQSTYSGFGYVNQANVFKVCDQPHPLLMKEVLDLCAGSGDLKAAQEKLLRVWNLGYSASDIVGTLFKVCRNHGTMNEGTKLNFIREIGMVHMRIAEGLNSRTQILGLLAKLCAL 373
            M TA+++      +     DA    +PWVEKYRPV L+D+VGNT+ ++RLKV+A+DGN+PH++++G PG GKT+SI CL+  LLG  +                                     VLELNASDERGIDV+R++IK FAQ+KV LPPGRHK++ILDEADSMT+ AQQALRRTMEIYS+TTRFA ACN S+KIIEPIQSRCAILR+++L+D E+L RL+++CE E V ++D GL A+IFTAEGDMR AINNLQST+SGFG+VNQ NVFK+CDQPHPL++++++  C   G +  A  ++  +W+ GYSA DIV T+F+V +    + E  KL FIRE+G  HMR+ EG+ +  Q+  ++A+LC  
Sbjct:    1 MTTASSSKDTGTSSTAKHVDAEGYEMPWVEKYRPVLLDDIVGNTDTVERLKVIAEDGNVPHIIISGMPGIGKTTSIHCLAHALLGPAY----------------------------------KEGVLELNASDERGIDVVRNKIKSFAQRKVTLPPGRHKIIILDEADSMTAGAQQALRRTMEIYSNTTRFAFACNMSNKIIEPIQSRCAILRYNKLSDVEVLKRLKEVCEMESVKYNDQGLAALIFTAEGDMRQAINNLQSTWSGFGFVNQDNVFKICDQPHPLVIRQMIKNCQ-KGQVDEALARINALWDQGYSAVDIVVTIFRVVKGMEELPEYLKLEFIREVGWTHMRVLEGVGTLVQLGAMIARLCKF 338          
The following BLAST results are available for this feature:
BLAST of EWM20422.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585100018|gb|EWM20422.1|0.000e+0100.00activator 1 37 kda subunit [Nannochloropsis gadita... [more]
gi|553189432|ref|XP_005855000.1|0.000e+084.65replication factor C subunit 2/4 [Nannochloropsis ... [more]
gi|299471716|emb|CBN76937.1|3.315e-15158.24conserved unknown protein [Ectocarpus siliculosus][more]
gi|1023262610|gb|KZT57854.1|6.137e-14857.57P-loop containing nucleoside triphosphate hydrolas... [more]
gi|1021803584|gb|KZO95895.1|1.810e-14758.61P-loop containing nucleoside triphosphate hydrolas... [more]
gi|1018893661|dbj|GAT48447.1|1.028e-14158.40predicted protein [Mycena chlorophos][more]
gi|686624696|gb|KGB76430.1|4.728e-14153.78replication factor C subunit 2/4 [Cryptococcus gat... [more]
gi|799336210|ref|XP_012051184.1|5.048e-14153.35replication factor C subunit 2/4 [Cryptococcus neo... [more]
gi|1062145269|gb|ODN91916.1|5.692e-14153.08replication factor C subunit 2/4 [Cryptococcus dep... [more]
gi|1062147761|gb|ODN94397.1|1.263e-14052.82replication factor C subunit 2/4 [Cryptococcus dep... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna10282rna10282Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications