EWM20443.1, cds10230 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM20443.1 vs. NCBI_GenBank
Match: gi|585100066|gb|EWM20443.1| (dihydrofolate reductase, partial [Nannochloropsis gaditana]) HSP 1 Score: 446.432 bits (1147), Expect = 2.074e-158 Identity = 224/224 (100.00%), Postives = 224/224 (100.00%), Query Frame = 0 Query: 1 MLLRRCLQHCLDTSAPNGIKRVDIRRYTALDTQFPPSTSFTASSSCSSSLASSSSSSSSFSFFLPSTSPPPSSPCPSFSSSSTSFSSSSSFTKLSSISMSRGLQPPLCRRFSHLPRPFSPDMRGKRDDVRMIACVAPPNLTIGKGGQLPWDLPEDRQYFFHCTRGHILVLGRRSYEVTIPVPVESDNKGEGGVGGWDGASGGREEKGGRREEEGGREGGREGGW 224 MLLRRCLQHCLDTSAPNGIKRVDIRRYTALDTQFPPSTSFTASSSCSSSLASSSSSSSSFSFFLPSTSPPPSSPCPSFSSSSTSFSSSSSFTKLSSISMSRGLQPPLCRRFSHLPRPFSPDMRGKRDDVRMIACVAPPNLTIGKGGQLPWDLPEDRQYFFHCTRGHILVLGRRSYEVTIPVPVESDNKGEGGVGGWDGASGGREEKGGRREEEGGREGGREGGW Sbjct: 1 MLLRRCLQHCLDTSAPNGIKRVDIRRYTALDTQFPPSTSFTASSSCSSSLASSSSSSSSFSFFLPSTSPPPSSPCPSFSSSSTSFSSSSSFTKLSSISMSRGLQPPLCRRFSHLPRPFSPDMRGKRDDVRMIACVAPPNLTIGKGGQLPWDLPEDRQYFFHCTRGHILVLGRRSYEVTIPVPVESDNKGEGGVGGWDGASGGREEKGGRREEEGGREGGREGGW 224
BLAST of EWM20443.1 vs. NCBI_GenBank
Match: gi|652832577|ref|WP_027116555.1| (hypothetical protein [Lachnospiraceae bacterium P6B14]) HSP 1 Score: 60.077 bits (144), Expect = 8.868e-8 Identity = 26/48 (54.17%), Postives = 37/48 (77.08%), Query Frame = 0 Query: 129 VRMIACVAPPNLTIGKGGQLPWDLPEDRQYFFHCTRGHILVLGRRSYE 176 ++MIA VAP + IGKGG++PW+LPEDR+ F T G L++GR++YE Sbjct: 2 LKMIAAVAPGGV-IGKGGRIPWNLPEDRRMFREITMGGTLIVGRKTYE 48
BLAST of EWM20443.1 vs. NCBI_GenBank
Match: gi|655070465|ref|WP_028518702.1| (dihydrofolate reductase [Ruminococcus flavefaciens]) HSP 1 Score: 59.6918 bits (143), Expect = 1.067e-7 Identity = 24/48 (50.00%), Postives = 36/48 (75.00%), Query Frame = 0 Query: 129 VRMIACVAPPNLTIGKGGQLPWDLPEDRQYFFHCTRGHILVLGRRSYE 176 + +IA VA N IG G++PWD+PEDR YF + T+G+I ++GR++YE Sbjct: 2 INIIAAVAA-NRIIGSKGKIPWDIPEDRAYFRNLTKGNICIMGRKTYE 48
BLAST of EWM20443.1 vs. NCBI_GenBank
Match: gi|916272764|ref|WP_051007810.1| (hypothetical protein [Ruminococcus flavefaciens]) HSP 1 Score: 57.3806 bits (137), Expect = 5.362e-7 Identity = 26/55 (47.27%), Postives = 38/55 (69.09%), Query Frame = 0 Query: 129 VRMIACVAPPNLTIGKGGQLPWDLPEDRQYFFHCTRGHILVLGRRSY-EVTIPVP 182 + +IA VA N IG GG++PW +P+D YF T GHI+++GRRS+ E+ P+P Sbjct: 2 INIIAAVAA-NGVIGSGGKIPWHIPQDMNYFRRITSGHIIIMGRRSFEEIGRPLP 55
BLAST of EWM20443.1 vs. NCBI_GenBank
Match: gi|916849660|ref|WP_051456716.1| (dihydrofolate reductase [Ruminococcus flavefaciens] >gi|585217856|gb|EWM52290.1| hypothetical protein RF007C_13130 [Ruminococcus flavefaciens 007c]) HSP 1 Score: 57.7658 bits (138), Expect = 6.012e-7 Identity = 26/55 (47.27%), Postives = 38/55 (69.09%), Query Frame = 0 Query: 129 VRMIACVAPPNLTIGKGGQLPWDLPEDRQYFFHCTRGHILVLGRRSY-EVTIPVP 182 + +IA VA N IG GG++PW +P+D YF T GHI+++GRRS+ E+ P+P Sbjct: 2 INIIAAVAA-NGVIGSGGKIPWHIPQDMNYFRRITSGHIIIMGRRSFEEIGRPLP 55 The following BLAST results are available for this feature:
BLAST of EWM20443.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 5
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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