rna10257, rna10257 (mRNA) Nannochloropsis gaditana

Overview
Namerna10257
Unique Namerna10257
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1278
Alignment locationKK037268.1:11783..12553 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101657g1.5460.mrna
Orig protein idgnl|cribi|Naga_101657g1.5460
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037268.1supercontigKK037268.1:11783..12553 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101657g1gene9959Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna10257rna10257-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM20445.1cds10226Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna10257 ID=rna10257|Name=rna10257|organism=Nannochloropsis gaditana|type=mRNA|length=1278bp
GCACTGGAATGCTCCGACGTTCCCAAATTGAAGCCTAAACCTCCCTCTTG
CCACGTTGCAGGAAGAGAAGAGGCGCGCAAGGACCCTCTCTGGTCATGTG
CAGTGGGTAAATATACCTTAATACAGAAACGCTGTGCAGAGTTGGCTTGT
CGCAAAACTGCGTCTGTGTGTTGTAACACAACACTTGCCATGATTCGCTC
ACTTCCAGCAGTGCAGGCGAGACTTCTCAGAGGAAAACGTCTGCTTTTAC
TTCGAGTCCCTCATGAGCTCAGTCCTTTGACATTGTTATGGCGCCTTTTC
TGAAGATTTTACCATGCGCTGGCACCTTTGCTTTCTCTGATGTCTCTCTT
TTGGATGCAGGGGACCAACAGGTGCTCCCACCACGAGGCCTCCCTACACG
CTTTCAGGCCTGGAGCTTCTTTCCGGTTGTTTCTTCGCCCCCTGGCCACG
ATAAAGAGGAAGCATTGATACCCGGTCCACTCTCCATGGCATCCCTCCCG
CATACCCCGGGTGACAGTACCTCGTTGCCGCTGCTTCACGTCGGCACTGG
CCTTCCCGGCTTGGAGGGGGAGCAGGGCAACGGGCAGGAGGGAAACAACG
CCAGCGTGGCAGGGATGTTGCAATCCCGTCGGCCCTCTGCAGTGCCTGAA
CCCTCCGAAGGGCCCTGGGCCGGGTTGGACGGGTGGGAGAGCCGGAGGAT
GAGCCGGGAAGTCGCGTCCATGCTCAAGCGCATGGACGCGGAGGCGAGGA
CGAAGGGGGAGAAACCGGGGAGTTTGGCCACGCGGGCGCAGAGGGCCTTG
AACCGGCAGCAGATGGTTTTGGTGACGACGGCAGAAGCGGGCGTCATCGA
GCTGGCGCGAGCGCGCGTGGCCGAGGAGAGGGAGAAGGCAGCGCTTCGGT
CGCCGTTGTTGCAGTCGACGGTGGCTGCACAGGGGGAAAGGGAAGGAGGG
GGGGCGGCGCGGCTGGCGTTGCCCGCGCCGGAGACCTTGGTGGAGGAGCG
GGAAGTGAGCAAGAGGATGATGGCCAAAGTGATGTCCCGGGAGGCTCGAG
CGCGCGGAGGAGGGAGGGAAAGGCCGGGGCCCGCGTTGCCCAAGGGCTCG
TGGGTGGGGCGGGTGCAAGCTGCTTACGCCAAATGCGAGAAGGTGAGGCT
GACGGTGGAGGAAACCAAGGACTGGGACGCCCTGGTGGAGGAGGTGGGGG
CGGAGGGGGAGGCGGGCGGGAGGGAGAAGACCGAGGCGCCGGGGAGGGAG
GGCGGGAGGGAGGGCGGGAGGGAGGGAC
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protein sequence of rna10257

>rna10257-protein ID=rna10257-protein|Name=rna10257|organism=Nannochloropsis gaditana|type=polypeptide|length=142bp
EGEVEEEGLAWYLDRGQGDHGRKEEVVAEERDLKQAIATLTISEAGSETA
RAGTLGGADGEGIAQSPGAKLSAVPGGGAMLDVSRALYRALMSVDGQPGR
DSLSALVQSAVMSGKTTLYLPPLTPPPLPPPLPPSLPPSQPA
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mRNA from alignment at KK037268.1:11783..12553+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna10257 ID=rna10257|Name=rna10257|organism=Nannochloropsis gaditana|type=mRNA|length=771bp|location=Sequence derived from alignment at KK037268.1:11783..12553+ (Nannochloropsis gaditana)
gagggggaggtggaggaggaaggcttggCGTGGTACCTGGATCGCGGACA
GGGAGACCATGgtcggaaagaggaagtagtggcggaggagagggacttgA
AGCAGGCGATCGCCACCTTAACAATCTCGGAAGCGGGCTCGGAGACGGCG
CGGGCCGGTACCCTGGGCGGGGCGGACGGCGAGGGGATCGCTCAATCTCC
GGGGGCGAAGCTGTCGGCAGTCCCAGGGGGCGGGGCTATGCttgatgttt
ctcgtgcgCTGTACCGAGCGCTCATGTCCGTGGACGGACAGCCGGGCCGA
GattccctctccgccctcgtGCAAAGCGCCGTCATGAGCGGGAAAACCAC
GCTCTacctgccccccctcaccccgccccctctccctcctcccctccctc
cctccctccctccgtcgcagCCTGCCTGACTCCCGccgacggcctcctcc
tggcgCGGGCCCAGGCATTGGTGGAAAACGGAGCCTTCGACCCGGGCGTG
AAACGGAAGCGGAAAAAATCCGCGAACGCTACCCTTGACCCGCCCTCTCT
GTcgatggaaggggtggaggaagggaaagaggaagggagggagggagagg
ggaagcggaTGACGGTGCCGATCACAGTGGAGGGCTGTGCGGCCGTACAA
TCCGAAGAGTGTAAGGCGGGGGGACGGATCGTCAAGAAcgcgctttcctc
ccggctGTTGACTTTGTTGAACAAGGGTATCTCTGTCTTTGAGAcggagg
atgagggggaggctcggaggg
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Coding sequence (CDS) from alignment at KK037268.1:11783..12553+

>rna10257 ID=rna10257|Name=rna10257|organism=Nannochloropsis gaditana|type=CDS|length=429bp|location=Sequence derived from alignment at KK037268.1:11783..12553+ (Nannochloropsis gaditana)
gagggggaggtggaggaggaaggcttggCGTGGTACCTGGATCGCGGACA
GGGAGACCATGgtcggaaagaggaagtagtggcggaggagagggacttgA
AGCAGGCGATCGCCACCTTAACAATCTCGGAAGCGGGCTCGGAGACGGCG
CGGGCCGGTACCCTGGGCGGGGCGGACGGCGAGGGGATCGCTCAATCTCC
GGGGGCGAAGCTGTCGGCAGTCCCAGGGGGCGGGGCTATGCttgatgttt
ctcgtgcgCTGTACCGAGCGCTCATGTCCGTGGACGGACAGCCGGGCCGA
GattccctctccgccctcgtGCAAAGCGCCGTCATGAGCGGGAAAACCAC
GCTCTacctgccccccctcaccccgccccctctccctcctcccctccctc
cctccctccctccgtcgcagCCTGCCTGA
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Synonyms
Publications