EWM20480.1, cds10190 (CDS) Nannochloropsis gaditana

Overview
NameEWM20480.1
Unique Namecds10190
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037266.1:46779..46887 +
Alignment locationKK037266.1:46930..47078 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM20480.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100574g4.8359.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037266.1supercontigKK037266.1:46779..46887 +
KK037266.1supercontigKK037266.1:46930..47078 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
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BLAST of EWM20480.1 vs. NCBI_GenBank
Match: gi|585100138|gb|EWM20480.1| (hypothetical protein Naga_100574g4 [Nannochloropsis gaditana])

HSP 1 Score: 172.555 bits (436), Expect = 1.399e-54
Identity = 85/85 (100.00%), Postives = 85/85 (100.00%), Query Frame = 0 
Query:    1 MSSDDVFSIVIISYSPNRNGKGQRDTGHKNYKHWKNIKLFSIMGDGSWLHLLMNLSTGSRAKLLKENKRPKLNTKLKDFISSILA 85
            MSSDDVFSIVIISYSPNRNGKGQRDTGHKNYKHWKNIKLFSIMGDGSWLHLLMNLSTGSRAKLLKENKRPKLNTKLKDFISSILA
Sbjct:    1 MSSDDVFSIVIISYSPNRNGKGQRDTGHKNYKHWKNIKLFSIMGDGSWLHLLMNLSTGSRAKLLKENKRPKLNTKLKDFISSILA 85
The following BLAST results are available for this feature:
BLAST of EWM20480.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|585100138|gb|EWM20480.1|1.399e-54100.00hypothetical protein Naga_100574g4 [Nannochloropsi... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna10221rna10221Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications