rna10221, rna10221 (mRNA) Nannochloropsis gaditana

Overview
Namerna10221
Unique Namerna10221
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1157
Alignment locationKK037266.1:46779..47078 +

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100574g4.8359.mrna
Orig protein idgnl|cribi|Naga_100574g4.8359
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037266.1supercontigKK037266.1:46779..47078 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100574g4gene9925Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna10221rna10221-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM20480.1cds10190Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna10221 ID=rna10221|Name=rna10221|organism=Nannochloropsis gaditana|type=mRNA|length=1157bp
AGAAGGCTATCTCGGCCCTCCAGGCAGGGTTTTGGTGTTTTTTTGCGGGT
TGGGAGATGGATTACGTCGGAATGCAGCATGGCCATATGCCAGGAGGTCG
GGGATCGAGAGGACAAAACTGGGTCAATGGGAAAACCGATCACACGCCTC
TCTTTTTACAAGGTTCATGAATGTAGGACACAGAGTCTTACCTAATCAAT
GCTATTGACATGGTCTGTTGCGGTCATCCTCGTGAAGGCCTGAACAAGAT
GTGGTGATGGTAAAAAGTCGCTTATTTCTTGTCGTCCCTCCTGAAAGCCA
GGCATGGTTTCGACGGGTGCGAGCTTACTTTCCCTCGAAACTCATATGTG
TAATGTACTATTACCGCAGAGGATGACGCATGGTATACAATGCTCGCTGC
TTTTTCTATCTGTGCAGTACACTGTTGCCAAGCTCTCTCGATTCATTTTT
TTTATTTTTCCCACTCCCGTCACACCAACGGGTTTCGACATCACTGCTCA
CGACACGTCTCCATCCTGTCATCTGCAAGTCAAGGAGCATTGCTACCTTT
CAAAGTACCGAAGTCGCCATCCTTCGCGGTATCATAATGCGTCTTTCACT
GTATGTCCTCCTCCTCTCCACCCTTCTTCTCGTCGTCACGGCCGAGTCTT
TTGTTGCACGGCCGTCCTCCTCCTCCTTCTTATCCACCAGCAAACGCCAC
CTTTTACCCCAGCCTTGCCCTTCCCTCTCCCCCGGATCCATCGACCCTCT
ACTCCCAAAGCGTAAAAATGTATTTCCTGTCCAAAATGCCGCGACTTCCC
ATGCCGCTGCTGCTTTGATGGAGAAGAAAGGCGGGGGCGCGGTCGTCCTG
GAAGGAACGAGGACGCTGTGGGCAAAATCCAAAGTCTGGGTGTTTATCAG
CTTGTGGTACTTCTTCAACGTCGCCTTTAACATTTACAACAAAAAGGTCC
TGAATGCGCTGCCTTTGCCATGGACAGTCTCTATCGCCCAACTAGGACTC
GGAGCCGTCTATGCGATGTTGCTCTGGCTCGTTCGCGCGCGGTGCGTTGC
CCCTCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTTTTCTCTTTCCCTCT
CGATACGTCACTCCCTCCCTCCCCTCCTCCCCCCCCCTTCCTCCCTCCCT
CCCTACC
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protein sequence of rna10221

>rna10221-protein ID=rna10221-protein|Name=rna10221|organism=Nannochloropsis gaditana|type=polypeptide|length=85bp
MSSDDVFSIVIISYSPNRNGKGQRDTGHKNYKHWKNIKLFSIMGDGSWLH
LLMNLSTGSRAKLLKENKRPKLNTKLKDFISSILA
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mRNA from alignment at KK037266.1:46779..47078+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna10221 ID=rna10221|Name=rna10221|organism=Nannochloropsis gaditana|type=mRNA|length=300bp|location=Sequence derived from alignment at KK037266.1:46779..47078+ (Nannochloropsis gaditana)
ATGTCTTCCGACGATGTCTTTTCTATAGTCATCATCTCGTACTCTCCCAA
TCGAAACGGAAAAGGACAGAGAGATACCGGTCACAAGAATTATAAGCATT
GGAAAAATAGTTGGATCAATGTCTGTATTTAAACCATCAAGAGAGGCAAA
GTCAAGTTATTTTCGATCATGGGTGACGGTAGCTGGCTGCATTTACTCAT
GAACTTGTCTACAGGGAGTCGTGCGAAGTTATTGAAGGAAAATAAGAGGC
CAAAGTTAAATACTAAGTTGAAAGATTTCATTTCTAGTATACTCGCTTAA
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Coding sequence (CDS) from alignment at KK037266.1:46779..47078+

>rna10221 ID=rna10221|Name=rna10221|organism=Nannochloropsis gaditana|type=CDS|length=516bp|location=Sequence derived from alignment at KK037266.1:46779..47078+ (Nannochloropsis gaditana)
ATGTCTTCCGACGATGTCTTTTCTATAGTCATCATCTCGTACTCTCCCAA
TCGAAACGGAAAAGGACAGAGAGATACCGGTCACAAGAATTATAAGCATT
GGAAAAATATCAAGTTATTTTCGATCATGGGTGACGGTAGCTGGCTGCAT
TTACTCATGAACTTGTCTACAGGGAGTCGTGCGAAGTTATTGAAGGAAAA
TAAGAGGCCAAAGTTAAATACTAAGTTGAAAGATTTCATTTCTAGTATAC
TCGCTTAAATGTCTTCCGACGATGTCTTTTCTATAGTCATCATCTCGTAC
TCTCCCAATCGAAACGGAAAAGGACAGAGAGATACCGGTCACAAGAATTA
TAAGCATTGGAAAAATATCAAGTTATTTTCGATCATGGGTGACGGTAGCT
GGCTGCATTTACTCATGAACTTGTCTACAGGGAGTCGTGCGAAGTTATTG
AAGGAAAATAAGAGGCCAAAGTTAAATACTAAGTTGAAAGATTTCATTTC
TAGTATACTCGCTTAA
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Synonyms
Publications