EWM20484.1, cds10189 (CDS) Nannochloropsis gaditana

Overview
NameEWM20484.1
Unique Namecds10189
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037266.1:44338..44904 +
Alignment locationKK037266.1:45156..45366 +

Link to JBrowse

Properties
Property NameValue
End range.
End range45366
Protein idEWM20484.1
Productglucose-6-phosphate phosphate translocator chloroplast
Partialtrue
Orig transcript idgnl|cribi|Naga_101308g1.7684.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037266.1supercontigKK037266.1:44338..44904 +
KK037266.1supercontigKK037266.1:45156..45366 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of EWM20484.1 vs. NCBI_GenBank
Match: gi|585100145|gb|EWM20484.1| (glucose-6-phosphate phosphate translocator chloroplast, partial [Nannochloropsis gaditana])

HSP 1 Score: 508.064 bits (1307), Expect = 0.000e+0
Identity = 259/259 (100.00%), Postives = 259/259 (100.00%), Query Frame = 0
Query:    1 MVYNARCFFYLCSTLLPSSLDSFFLFFPLPSHQRVSTSLLTTRLHPVICKSRSIATFQSTEVAILRGIIMRLSLYVLLLSTLLLVVTAESFVARPSSSSFLSTSKRHLLPQPCPSLSPGSIDPLLPKRKNVFPVQNAATSHAAAALMEKKGGGAVVLEGTRTLWAKSKVWVFISLWYFFNVAFNIYNKKVLNALPLPWTVSIAQLGLGAVYAMLLWLVRARCVAPPSLPPSLPPSFSLSLSIRHSLPPLLPPPSSLPPY 259
            MVYNARCFFYLCSTLLPSSLDSFFLFFPLPSHQRVSTSLLTTRLHPVICKSRSIATFQSTEVAILRGIIMRLSLYVLLLSTLLLVVTAESFVARPSSSSFLSTSKRHLLPQPCPSLSPGSIDPLLPKRKNVFPVQNAATSHAAAALMEKKGGGAVVLEGTRTLWAKSKVWVFISLWYFFNVAFNIYNKKVLNALPLPWTVSIAQLGLGAVYAMLLWLVRARCVAPPSLPPSLPPSFSLSLSIRHSLPPLLPPPSSLPPY
Sbjct:    1 MVYNARCFFYLCSTLLPSSLDSFFLFFPLPSHQRVSTSLLTTRLHPVICKSRSIATFQSTEVAILRGIIMRLSLYVLLLSTLLLVVTAESFVARPSSSSFLSTSKRHLLPQPCPSLSPGSIDPLLPKRKNVFPVQNAATSHAAAALMEKKGGGAVVLEGTRTLWAKSKVWVFISLWYFFNVAFNIYNKKVLNALPLPWTVSIAQLGLGAVYAMLLWLVRARCVAPPSLPPSLPPSFSLSLSIRHSLPPLLPPPSSLPPY 259          
BLAST of EWM20484.1 vs. NCBI_GenBank
Match: gi|585112180|gb|EWM29609.1| (uncharacterize protein [Nannochloropsis gaditana])

HSP 1 Score: 77.411 bits (189), Expect = 1.264e-12
Identity = 46/117 (39.32%), Postives = 63/117 (53.85%), Query Frame = 0
Query:  107 HLLPQPCPSLSPGSIDPLLPKRKNVFPVQNAATSHAAAALMEKKGGGAVVLEGTRTLWAKSKVWV--FISLWYFFNVAFNIYNKKVLNALPLPWTVSIAQLGLGAVYAMLLWLVRAR 221
            H +P   PS SP +++ LL   K +  + N      A +      G         +  AK  V    + +LW+  NV +NI NK+VLNALPLP+TV+ AQLG+GAVY  L WL+R R
Sbjct:  102 HPVPLCAPSSSPSALEALLTGSKLMGSMLNKIRGGGAISEARTVNGSGTCKGALVSTHAKGTVLTLSYFALWFALNVYYNIVNKRVLNALPLPFTVATAQLGIGAVYVSLSWLLRVR 218          
BLAST of EWM20484.1 vs. NCBI_GenBank
Match: gi|299470102|emb|CBN78131.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 75.0998 bits (183), Expect = 6.201e-12
Identity = 50/147 (34.01%), Postives = 72/147 (48.98%), Query Frame = 0
Query:   86 VTAESFVARPSSSSFLS-----TSKRHLLPQPCPSLSPGSIDPLLPKRKNVFPV------QNAATSHAAAALMEKKGGGAVVLEGTRTLWAKSKVWVFISLWYFFNVAFNIYNKKVLNALPLPWTVSIAQLGLGAVYAMLLWLVRAR 221
            + + S  ARPSS+  +S        R  + Q  P+   G        R  +F        ++AA S A+A   E K   ++V           KV  +  LWY FN+ +NIYNK+VLN LP+PW ++ AQLG+G +Y   LWL + R
Sbjct:   28 IASPSACARPSSAGIMSRASALADNRVRMQQELPTTPAGG----RAARTELFSTPAASGDKDAAPSPASAVEKEAKASPSMV-----------KVTAYFGLWYLFNIGYNIYNKRVLNILPMPWLMASAQLGIGLLYVFPLWLTKLR 159          
BLAST of EWM20484.1 vs. NCBI_GenBank
Match: gi|397638634|gb|EJK73151.1| (hypothetical protein THAOC_05244, partial [Thalassiosira oceanica])

HSP 1 Score: 74.3294 bits (181), Expect = 9.060e-12
Identity = 39/98 (39.80%), Postives = 57/98 (58.16%), Query Frame = 0
Query:  125 LPKRKNVFPVQNAATSHAAAALMEKKGGGAVVLEGTRTLWAKS-KVWVFISLWYFFNVAFNIYNKKVLNALPLPWTVSIAQLGLGAVYAMLLWLVRAR 221
            +P   N F   +A TS + A  +   GG AV  E   +  A++ KV  + +LWY FN+ +NIYNK+ LNAL  PWT++  Q+  G +Y + LWL+  R
Sbjct:   39 VPAVSNTF--NSARTSQSTALALSSTGGDAVAEESAGSGLAETLKVGSYFALWYLFNIGYNIYNKQALNALDFPWTIATIQMATGILYFVPLWLLGLR 134          
BLAST of EWM20484.1 vs. NCBI_GenBank
Match: gi|397610696|gb|EJK60971.1| (hypothetical protein THAOC_18603 [Thalassiosira oceanica])

HSP 1 Score: 74.7146 bits (182), Expect = 9.575e-12
Identity = 39/98 (39.80%), Postives = 57/98 (58.16%), Query Frame = 0
Query:  125 LPKRKNVFPVQNAATSHAAAALMEKKGGGAVVLEGTRTLWAKS-KVWVFISLWYFFNVAFNIYNKKVLNALPLPWTVSIAQLGLGAVYAMLLWLVRAR 221
            +P   N F   +A TS + A  +   GG AV  E   +  A++ KV  + +LWY FN+ +NIYNK+ LNAL  PWT++  Q+  G +Y + LWL+  R
Sbjct:   38 VPAVSNTF--NSARTSQSTALALSSTGGDAVAEESAGSGLAETLKVGSYFALWYLFNIGYNIYNKQALNALDFPWTIATIQMATGILYFVPLWLLGLR 133          
BLAST of EWM20484.1 vs. NCBI_GenBank
Match: gi|585113114|gb|EWM30451.1| (phosphate phosphoenolpyruvate translocator precursor [Nannochloropsis gaditana])

HSP 1 Score: 72.4034 bits (176), Expect = 5.814e-11
Identity = 35/77 (45.45%), Postives = 45/77 (58.44%), Query Frame = 0
Query:  146 LMEKKGGGAVVLEGTRTLWAKS-KVWVFISLWYFFNVAFNIYNKKVLNALPLPWTVSIAQLGLGAVYAMLLWLVRAR 221
            L+ ++GG      G+     ++ KV  F  LWY FN+ +NIYNKK LN LPLPW V + QL LG +Y   LWL   R
Sbjct:   81 LVSRRGGEVATATGSDAGVKQTLKVGSFFFLWYLFNIGYNIYNKKALNVLPLPWMVGLVQLSLGLLYVFPLWLFGIR 157          
BLAST of EWM20484.1 vs. NCBI_GenBank
Match: gi|299116158|emb|CBN76065.1| (putative phosphate/phosphoenolpyruvate translocator precursor protein [Ectocarpus siliculosus])

HSP 1 Score: 68.1662 bits (165), Expect = 1.607e-9
Identity = 39/99 (39.39%), Postives = 59/99 (59.60%), Query Frame = 0
Query:  136 NAATSHAAAALMEKKGGGA-------VVLEGTRTLWAKSKVWVFISLWYFFNVAFNIYNKKVLNALPLPWTVSIAQLGLGAVYAMLLWLVRARCVAPPS 227
            N+++  + AA + + G GA       +  E    L  +++V  +  LWY  NV +NI NKKVLNALPLP ++++ QLG+G+++    WLVRAR   PP 
Sbjct:   56 NSSSDSSGAAGLLRGGDGAGPATRSSLTAEAGSGLKDRARVLGYFGLWYALNVWYNIVNKKVLNALPLPSSIAVLQLGIGSLWVGTQWLVRART--PPG 152          
BLAST of EWM20484.1 vs. NCBI_GenBank
Match: gi|551613765|ref|XP_005787855.1| (hypothetical protein EMIHUDRAFT_352050 [Emiliania huxleyi CCMP1516] >gi|485641260|gb|EOD35426.1| hypothetical protein EMIHUDRAFT_352050 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 66.6254 bits (161), Expect = 5.380e-9
Identity = 27/50 (54.00%), Postives = 36/50 (72.00%), Query Frame = 0
Query:  172 FISLWYFFNVAFNIYNKKVLNALPLPWTVSIAQLGLGAVYAMLLWLVRAR 221
            F +LWY FN+ +NIYNKK LNALP+PWT+++ QL +G  Y + LW    R
Sbjct:   75 FFALWYLFNIGYNIYNKKALNALPIPWTMALLQLFVGIPYCLFLWTTGLR 124          
BLAST of EWM20484.1 vs. NCBI_GenBank
Match: gi|1189393182|gb|OSX80082.1| (hypothetical protein BU14_0060s0047 [Porphyra umbilicalis])

HSP 1 Score: 65.855 bits (159), Expect = 9.161e-9
Identity = 50/138 (36.23%), Postives = 65/138 (47.10%), Query Frame = 0
Query:   86 VTAESFVARPSSSSFLSTSKRHLLPQPCPSLSPGSIDPLLPKRKNVFPVQNAATSHAAAALMEKKGGGAVVLEGT--RTLWAKSKVWVFISLWYFFNVAFNIYNKKVLNALPLPWTVSIAQLGLGAVYAMLLWLVRAR 221
            VTA    ARP + +      R LL       + GS  PL  +R         A + A ++L      GA   E    +TL    KV + I +WY  N+ +NI NK+VLN  P PW VS AQL  G VY + LW V+ R
Sbjct:   19 VTASVVAARPGAFAVTPRYGRSLLA------AVGSKAPLQSRR--------VAVTAAPSSLRMAASPGATSEEAASAQTL----KVSILIGMWYLLNIGYNITNKRVLNWFPFPWFVSWAQLAFGVVYCVALWAVKLR 138          
BLAST of EWM20484.1 vs. NCBI_GenBank
Match: gi|545703712|ref|XP_005704181.1| (sugar-phosphate:phosphate translocator, DMT family [Galdieria sulphuraria] >gi|194462447|gb|ACF72679.1| putative hexose phosphate translocator [Galdieria sulphuraria] >gi|452820621|gb|EME27661.1| sugar-phosphate:phosphate translocator, DMT family [Galdieria sulphuraria])

HSP 1 Score: 65.0846 bits (157), Expect = 1.519e-8
Identity = 47/134 (35.07%), Postives = 66/134 (49.25%), Query Frame = 0
Query:   94 RPSSSSFLSTSKRHLLPQPCPSLSPG---SIDPLLPKRKNVFPVQNAATSHAAAALMEKKGGGA---VVLEGTRTLWAKSKVWVFISLWYFFNVAFNIYNKKVLNALPLPWTVSIAQLGLGAVYAMLLWLVRAR 221
            + S SS +  SK+ LL  P  +LS     ++  L  K  NV            AA+ + + GG+     +  + TL    KV  +  LWYFFN  FNI NK+ LN    PW +S  QLG+GA+Y   LW++  R
Sbjct:   29 KNSISSHMEGSKK-LLGTPRFTLSRSQFLNVSYLRTKYNNVASSSKGEKDIIRAAVDKSESGGSPQKSSVGVSPTLVHTLKVGFYFFLWYFFNFIFNIANKRTLNMWKYPWVLSTIQLGVGALYCTFLWVLGLR 161          
The following BLAST results are available for this feature:
BLAST of EWM20484.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585100145|gb|EWM20484.1|0.000e+0100.00glucose-6-phosphate phosphate translocator chlorop... [more]
gi|585112180|gb|EWM29609.1|1.264e-1239.32uncharacterize protein [Nannochloropsis gaditana][more]
gi|299470102|emb|CBN78131.1|6.201e-1234.01conserved unknown protein [Ectocarpus siliculosus][more]
gi|397638634|gb|EJK73151.1|9.060e-1239.80hypothetical protein THAOC_05244, partial [Thalass... [more]
gi|397610696|gb|EJK60971.1|9.575e-1239.80hypothetical protein THAOC_18603 [Thalassiosira oc... [more]
gi|585113114|gb|EWM30451.1|5.814e-1145.45phosphate phosphoenolpyruvate translocator precurs... [more]
gi|299116158|emb|CBN76065.1|1.607e-939.39putative phosphate/phosphoenolpyruvate translocato... [more]
gi|551613765|ref|XP_005787855.1|5.380e-954.00hypothetical protein EMIHUDRAFT_352050 [Emiliania ... [more]
gi|1189393182|gb|OSX80082.1|9.161e-936.23hypothetical protein BU14_0060s0047 [Porphyra umbi... [more]
gi|545703712|ref|XP_005704181.1|1.519e-835.07sugar-phosphate:phosphate translocator, DMT family... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna10220rna10220Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications