EWM20485.1, cds10188 (CDS) Nannochloropsis gaditana

Overview
NameEWM20485.1
Unique Namecds10188
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037266.1:44150..44169 -
Alignment locationKK037266.1:43749..43855 -
Alignment locationKK037266.1:43411..43611 -
Alignment locationKK037266.1:42844..43085 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM20485.1
Productwd repeat-containing protein 92
Orig transcript idgnl|cribi|Naga_101308g2.7685.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037266.1supercontigKK037266.1:44150..44169 -
KK037266.1supercontigKK037266.1:43749..43855 -
KK037266.1supercontigKK037266.1:43411..43611 -
KK037266.1supercontigKK037266.1:42844..43085 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR015943WD40/YVTN_repeat-like_dom
Homology
BLAST of EWM20485.1 vs. NCBI_GenBank
Match: gi|585100146|gb|EWM20485.1| (wd repeat-containing protein 92 [Nannochloropsis gaditana])

HSP 1 Score: 388.652 bits (997), Expect = 7.847e-137
Identity = 189/189 (100.00%), Postives = 189/189 (100.00%), Query Frame = 0
Query:    1 MSIALIREKGGEQSHVVKINLNPKRLCYGRPKNTEKRKTSFIGPATMVNIKDGPQFIPHTQTNLSYTPHDVKWIPCSARLVSVGATASGKGKLEIYALSGGALKKTAETVHAQSLRCATFGAATLEERKLATGDWNGDLCVWYVVAEPAVPSLPPSLPPSLAWSLPSSILFLSPPQIARLHSLFLAFST 189
            MSIALIREKGGEQSHVVKINLNPKRLCYGRPKNTEKRKTSFIGPATMVNIKDGPQFIPHTQTNLSYTPHDVKWIPCSARLVSVGATASGKGKLEIYALSGGALKKTAETVHAQSLRCATFGAATLEERKLATGDWNGDLCVWYVVAEPAVPSLPPSLPPSLAWSLPSSILFLSPPQIARLHSLFLAFST
Sbjct:    1 MSIALIREKGGEQSHVVKINLNPKRLCYGRPKNTEKRKTSFIGPATMVNIKDGPQFIPHTQTNLSYTPHDVKWIPCSARLVSVGATASGKGKLEIYALSGGALKKTAETVHAQSLRCATFGAATLEERKLATGDWNGDLCVWYVVAEPAVPSLPPSLPPSLAWSLPSSILFLSPPQIARLHSLFLAFST 189          
BLAST of EWM20485.1 vs. NCBI_GenBank
Match: gi|553191799|ref|XP_005855457.1| (wd repeat-containing protein 92, partial [Nannochloropsis gaditana CCMP526] >gi|422293599|gb|EKU20899.1| wd repeat-containing protein 92, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 199.519 bits (506), Expect = 2.482e-63
Identity = 94/95 (98.95%), Postives = 95/95 (100.00%), Query Frame = 0
Query:   47 MVNIKDGPQFIPHTQTNLSYTPHDVKWIPCSARLVSVGATASGKGKLEIYALSGGALKKTAETVHAQSLRCATFGAATLEERKLATGDWNGDLCV 141
            MVNIKDGPQFIPHTQTNLSYTPHDVKWIPCSARLVSVGATA+GKGKLEIYALSGGALKKTAETVHAQSLRCATFGAATLEERKLATGDWNGDLCV
Sbjct:    1 MVNIKDGPQFIPHTQTNLSYTPHDVKWIPCSARLVSVGATATGKGKLEIYALSGGALKKTAETVHAQSLRCATFGAATLEERKLATGDWNGDLCV 95          
BLAST of EWM20485.1 vs. NCBI_GenBank
Match: gi|1198303303|gb|OUM60205.1| (hypothetical protein PIROE2DRAFT_14100, partial [Piromyces sp. E2])

HSP 1 Score: 99.3673 bits (246), Expect = 1.722e-23
Identity = 42/89 (47.19%), Postives = 59/89 (66.29%), Query Frame = 0
Query:   54 PQFIPHTQTNLSYTPHDVKWIPCSARLVSVGATASGKGKLEIYALSGGALKKTAETVHAQSLRCATFGAATLEERKLATGDWNGDLCVW 142
            PQ IPH Q +L++T  DVKW+PCSAR V +G  + G G +++Y +  G LK T ET    + +C TFGA++L  R  ATGD++G L +W
Sbjct:    2 PQIIPHLQKSLNFTAFDVKWVPCSARFVVLGQYSRGTGVMQVYEIDNGELKVTQETEKTHAFKCGTFGASSLNTRHFATGDFSGRLSLW 90          
BLAST of EWM20485.1 vs. NCBI_GenBank
Match: gi|537262402|gb|ERE90242.1| (WD repeat-containing protein 92 [Cricetulus griseus])

HSP 1 Score: 98.2117 bits (243), Expect = 2.979e-23
Identity = 42/89 (47.19%), Postives = 61/89 (68.54%), Query Frame = 0
Query:   54 PQFIPHTQTNLSYTPHDVKWIPCSARLVSVGATASGKGKLEIYALSGGALKKTAETVHAQSLRCATFGAATLEERKLATGDWNGDLCVW 142
            PQ I H Q  L+YT  D KW+PCSA+ V++G  A G G +++Y +  G LK   E   A+ ++C TFGAA+L++R LATGD++G+L +W
Sbjct:    7 PQIIVHIQKGLNYTVFDCKWVPCSAKFVTMGNFARGTGVIQVYEIQRGDLKLLREIEKAKPIKCGTFGAASLQQRYLATGDFDGNLHIW 95          
BLAST of EWM20485.1 vs. NCBI_GenBank
Match: gi|405955292|gb|EKC22462.1| (WD repeat-containing protein 92 [Crassostrea gigas])

HSP 1 Score: 99.3673 bits (246), Expect = 4.182e-23
Identity = 46/103 (44.66%), Postives = 66/103 (64.08%), Query Frame = 0
Query:   52 DGPQFIPHTQTNLSYTPHDVKWIPCSARLVSVGATASGKGKLEIYALSGGALKKTAETVHAQSLRCATFGAATLEERKLATGDWNGDLCVWYVVAEPAVPSLP 154
            D PQ I H + +L YT  D KWIPCSA+ V +G+ A G G ++IY LS G +    E   A++L+C TFGA++L++R LATGD++G + +W +      P LP
Sbjct:    2 DKPQIIAHIEKSLDYTLFDTKWIPCSAKFVVLGSHARGTGAIQIYELSHGQINCVKEIEKAKALKCGTFGASSLQQRYLATGDFDGRMQIWNL----ETPELP 100          
BLAST of EWM20485.1 vs. NCBI_GenBank
Match: gi|91086191|ref|XP_971352.1| (PREDICTED: WD repeat-containing protein 92 [Tribolium castaneum] >gi|270010235|gb|EFA06683.1| WD repeat-containing protein 92-like Protein [Tribolium castaneum])

HSP 1 Score: 102.064 bits (253), Expect = 1.575e-22
Identity = 45/89 (50.56%), Postives = 61/89 (68.54%), Query Frame = 0
Query:   54 PQFIPHTQTNLSYTPHDVKWIPCSARLVSVGATASGKGKLEIYALSGGALKKTAETVHAQSLRCATFGAATLEERKLATGDWNGDLCVW 142
            PQ I H Q  L+YT HDVKWIPCSA+ VS+G  ++G G +E Y++SG  ++K AE       +C TF A++L +R LATGD++G L VW
Sbjct:    7 PQIICHVQQALNYTVHDVKWIPCSAKFVSIGGKSNGAGIIETYSISGDGIEKVAEFGKKDHFKCGTFHASSLRDRHLATGDFSGRLQVW 95          
BLAST of EWM20485.1 vs. NCBI_GenBank
Match: gi|966644413|gb|KTF79325.1| (hypothetical protein cypCar_00038163 [Cyprinus carpio])

HSP 1 Score: 97.0561 bits (240), Expect = 1.866e-22
Identity = 43/89 (48.31%), Postives = 59/89 (66.29%), Query Frame = 0
Query:   54 PQFIPHTQTNLSYTPHDVKWIPCSARLVSVGATASGKGKLEIYALSGGALKKTAETVHAQSLRCATFGAATLEERKLATGDWNGDLCVW 142
            PQ I H Q +L+YT  D +WIPCSA+ V +G  A G G L+IY +  G L+   E   A+ ++C TFGA +L++R LATGD++G L VW
Sbjct:    8 PQIIAHIQKSLNYTVFDSRWIPCSAKFVCMGNFARGSGVLQIYEIQRGELQLVREIEKAKPIKCGTFGATSLQQRHLATGDFDGGLNVW 96          
BLAST of EWM20485.1 vs. NCBI_GenBank
Match: gi|30575632|gb|AAP32828.1| (HZGJ-like protein [Mus musculus])

HSP 1 Score: 100.523 bits (249), Expect = 2.281e-22
Identity = 49/109 (44.95%), Postives = 70/109 (64.22%), Query Frame = 0
Query:   43 GPATMVNIKDGPQFIPHTQTNLSYTPHDVKWIPCSARLVSVGATASGKGKLEIYALSGGALKKTAETVHAQSLRCATFGAATLEERKLATGDWNGDLCVWYVVAEPAVP 151
            GP TM   +  PQ I H Q  L+YT  D KW+PCSA+ V++G  A G G +++Y +  G LK   E   A+ ++C TFGAA+L++R LATGD+ G+L +W + A P +P
Sbjct:   26 GPLTMSTFEK-PQIIVHIQKGLNYTVFDSKWVPCSAKFVTMGNFARGTGVIQVYEIQRGDLKLLREIEKAKPIKCGTFGAASLQQRFLATGDFGGNLHIWNLEA-PEMP 132          
BLAST of EWM20485.1 vs. NCBI_GenBank
Match: gi|1004664572|ref|XP_015747077.1| (PREDICTED: WD repeat-containing protein 92 [Python bivittatus])

HSP 1 Score: 101.679 bits (252), Expect = 2.395e-22
Identity = 47/98 (47.96%), Postives = 67/98 (68.37%), Query Frame = 0
Query:   54 PQFIPHTQTNLSYTPHDVKWIPCSARLVSVGATASGKGKLEIYALSGGALKKTAETVHAQSLRCATFGAATLEERKLATGDWNGDLCVWYVVAEPAVP 151
            PQ I HTQ +LSYT  D KW+PCSARL+ +G+   G G +++Y L GG L    E   ++ ++C TFGAA+L++R LATGD+ G+L +W + A P +P
Sbjct:   10 PQIIAHTQHSLSYTVFDCKWVPCSARLLCLGSFPRGTGVIQLYELQGGRLNLLREIEKSRPIKCGTFGAASLQQRYLATGDFGGNLNIWNLEA-PEIP 106          
BLAST of EWM20485.1 vs. NCBI_GenBank
Match: gi|1020605283|ref|XP_016118562.1| (PREDICTED: WD repeat-containing protein 92-like [Sinocyclocheilus grahami])

HSP 1 Score: 96.6709 bits (239), Expect = 2.719e-22
Identity = 43/89 (48.31%), Postives = 59/89 (66.29%), Query Frame = 0
Query:   54 PQFIPHTQTNLSYTPHDVKWIPCSARLVSVGATASGKGKLEIYALSGGALKKTAETVHAQSLRCATFGAATLEERKLATGDWNGDLCVW 142
            PQ I H Q +LSYT  D +W+PCSA+ V +G  A G G L+IY +  G L+   E   A+ ++C TFGA +L++R LATGD++G L VW
Sbjct:    8 PQIIAHIQKSLSYTVFDSRWLPCSAKFVCMGNFARGTGVLQIYEVQRGELQLVREIEKAKPIKCGTFGATSLQQRHLATGDFDGSLDVW 96          
The following BLAST results are available for this feature:
BLAST of EWM20485.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585100146|gb|EWM20485.1|7.847e-137100.00wd repeat-containing protein 92 [Nannochloropsis g... [more]
gi|553191799|ref|XP_005855457.1|2.482e-6398.95wd repeat-containing protein 92, partial [Nannochl... [more]
gi|1198303303|gb|OUM60205.1|1.722e-2347.19hypothetical protein PIROE2DRAFT_14100, partial [P... [more]
gi|537262402|gb|ERE90242.1|2.979e-2347.19WD repeat-containing protein 92 [Cricetulus griseu... [more]
gi|405955292|gb|EKC22462.1|4.182e-2344.66WD repeat-containing protein 92 [Crassostrea gigas... [more]
gi|91086191|ref|XP_971352.1|1.575e-2250.56PREDICTED: WD repeat-containing protein 92 [Tribol... [more]
gi|966644413|gb|KTF79325.1|1.866e-2248.31hypothetical protein cypCar_00038163 [Cyprinus car... [more]
gi|30575632|gb|AAP32828.1|2.281e-2244.95HZGJ-like protein [Mus musculus][more]
gi|1004664572|ref|XP_015747077.1|2.395e-2247.96PREDICTED: WD repeat-containing protein 92 [Python... [more]
gi|1020605283|ref|XP_016118562.1|2.719e-2248.31PREDICTED: WD repeat-containing protein 92-like [S... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna10219rna10219Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications