rna10217, rna10217 (mRNA) Nannochloropsis gaditana

Overview
Namerna10217
Unique Namerna10217
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length462
Alignment locationKK037266.1:37556..37909 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100452g2.10232.mrna
Orig protein idgnl|cribi|Naga_100452g2.10232
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037266.1supercontigKK037266.1:37556..37909 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100452g2gene9921Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna10217rna10217-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM20486.1cds10186Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna10217 ID=rna10217|Name=rna10217|organism=Nannochloropsis gaditana|type=mRNA|length=462bp
ATGCCCTCTCTCCTCCTCTGGCTCTTCATCCTTTTGGTCCTCCTTCCTGC
CGTCTTCCTCCTTCTACTCATCAAGCTTCCCAAACCCGTCCCAGCTCGAT
GGGAGGTGCGGCTTTTCCTGCTCATGGGCATGCCTGCCGATCAATTTTTG
TCCTACATCATCCAGAATGGCGTGGATCCTGTTTTCTGGCATCGCGCTTT
GTATGCCACCTACATATCTCTCATGGCAGCATTTTTCTGGATTCCCAAAG
AGGAGGAAAAGTACTCAGTGGAACAAATTGAGGAGGTCCCCATCCTTCAT
CCCCCCATTTTCATCATCGGCCACTACCGGAGCGGCACCTCCCTTCTGCA
TGAGCTCTTGAACAACGACGAGAGATTGGTTGCCCCCACGGCCTTCCAAT
GCTACGTTCCGCGGATATTCTTGGGAAGGGAGGTTCATGGCCAAGCAGTT
TGCAGGGCTTGA
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protein sequence of rna10217

>rna10217-protein ID=rna10217-protein|Name=rna10217|organism=Nannochloropsis gaditana|type=polypeptide|length=117bp
MTPAARPTAEPTVTPTMTPAARPTAEPTATPTMTPAAQPTAGPTMTPTAE
PTAGPTMTPTAQPTATPTMTPTAEPTAAPTMTPTAQPTATPTMTPTAEPT
AAPTMTPTAQPTAAPTK
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mRNA from alignment at KK037266.1:37556..37909+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna10217 ID=rna10217|Name=rna10217|organism=Nannochloropsis gaditana|type=mRNA|length=354bp|location=Sequence derived from alignment at KK037266.1:37556..37909+ (Nannochloropsis gaditana)
ATGACACCTGCTGCCCGGCCTACCGCCGAGCCTACTGTGACTCCCACCAT
GACACCTGCTGCCCGGCCTACCGCCGAGCCTACTGCGACTCCTACCATGA
CTCCCGCCGCCCAGCCTACTGCAGGTCCCACTATGACACCTACCGCCGAG
CCTACGGCAGGTCCTACCATGACTCCCACAGCCCAGCCTACCGCGACTCC
CACTATGACACCTACCGCCGAGCCTACTGCAGCTCCTACTATGACTCCCA
CAGCCCAGCCTACCGCGACTCCCACCATGACACCTACCGCCGAGCCTACT
GCAGCTCCTACTATGACTCCTACAGCCCAGCCTACTGCGGCTCCCACCAA
GTAA
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Coding sequence (CDS) from alignment at KK037266.1:37556..37909+

>rna10217 ID=rna10217|Name=rna10217|organism=Nannochloropsis gaditana|type=CDS|length=354bp|location=Sequence derived from alignment at KK037266.1:37556..37909+ (Nannochloropsis gaditana)
ATGACACCTGCTGCCCGGCCTACCGCCGAGCCTACTGTGACTCCCACCAT
GACACCTGCTGCCCGGCCTACCGCCGAGCCTACTGCGACTCCTACCATGA
CTCCCGCCGCCCAGCCTACTGCAGGTCCCACTATGACACCTACCGCCGAG
CCTACGGCAGGTCCTACCATGACTCCCACAGCCCAGCCTACCGCGACTCC
CACTATGACACCTACCGCCGAGCCTACTGCAGCTCCTACTATGACTCCCA
CAGCCCAGCCTACCGCGACTCCCACCATGACACCTACCGCCGAGCCTACT
GCAGCTCCTACTATGACTCCTACAGCCCAGCCTACTGCGGCTCCCACCAA
GTAA
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Synonyms
Publications