EWM20489.1, cds10185 (CDS) Nannochloropsis gaditana

Overview
NameEWM20489.1
Unique Namecds10185
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037266.1:30166..30330 +
Alignment locationKK037266.1:30480..30599 +
Alignment locationKK037266.1:30838..30984 +
Alignment locationKK037266.1:31230..31259 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM20489.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100382g4.7175.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037266.1supercontigKK037266.1:30166..30330 +
KK037266.1supercontigKK037266.1:30480..30599 +
KK037266.1supercontigKK037266.1:30838..30984 +
KK037266.1supercontigKK037266.1:31230..31259 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase
Homology
BLAST of EWM20489.1 vs. NCBI_GenBank
Match: gi|585100152|gb|EWM20489.1| (hypothetical protein Naga_100382g4 [Nannochloropsis gaditana])

HSP 1 Score: 308.916 bits (790), Expect = 2.058e-106
Identity = 153/153 (100.00%), Postives = 153/153 (100.00%), Query Frame = 0
Query:    1 MPSLLLWLFILLVLLPAVFLLLLIKLPKPVPARWEVRLFLLMGMPADQFLSYIIQNGVDPVFWHRALYATYISLMAAFFWIPKEEEKYSVEQIEEVPILHPPIFIIGHYRSGTSLLHELLNNDERLVAPTAFQCYVPRIFLGREVHGQAVCRA 153
            MPSLLLWLFILLVLLPAVFLLLLIKLPKPVPARWEVRLFLLMGMPADQFLSYIIQNGVDPVFWHRALYATYISLMAAFFWIPKEEEKYSVEQIEEVPILHPPIFIIGHYRSGTSLLHELLNNDERLVAPTAFQCYVPRIFLGREVHGQAVCRA
Sbjct:    1 MPSLLLWLFILLVLLPAVFLLLLIKLPKPVPARWEVRLFLLMGMPADQFLSYIIQNGVDPVFWHRALYATYISLMAAFFWIPKEEEKYSVEQIEEVPILHPPIFIIGHYRSGTSLLHELLNNDERLVAPTAFQCYVPRIFLGREVHGQAVCRA 153          
BLAST of EWM20489.1 vs. NCBI_GenBank
Match: gi|585110923|gb|EWM28507.1| (hypothetical protein Naga_100058g18 [Nannochloropsis gaditana])

HSP 1 Score: 123.635 bits (309), Expect = 3.789e-30
Identity = 68/146 (46.58%), Postives = 95/146 (65.07%), Query Frame = 0
Query:    1 MPSLLLWLFILLVLLPAVFLLLLIKLPKPVPARWEVRLFLLMGMPADQFLSYIIQNG--VDPVFWHRALYATYISLMAAFFWIPKEEEKYSVEQIEEVPILHPPIFIIGHYRSGTSLLHELLNNDERLVAPTAFQCYVPRIFLGRE 144
            MP +L  +  L +L    F+L LI LP+ V  RWEV+  +  G    Q+  Y+ ++   VDP++WHRAL+ T IS   +F W PKEE++Y  E I    I  PP+FI+GH+RSGT+ LHEL++ D+R VAPT +QC+ PR+FL RE
Sbjct:  122 MPVILKIIVGLFIL----FILSLIYLPRSVKHRWEVKFMVAQGWTLRQWFVYLARHNFVVDPIYWHRALFITVISTFTSFVWAPKEEKEYPEETIRATTIQQPPLFILGHFRSGTTRLHELMSKDDRFVAPTVYQCFAPRVFLHRE 263          
BLAST of EWM20489.1 vs. NCBI_GenBank
Match: gi|918704101|ref|WP_052573134.1| (sulfotransferase family protein [Haloferula sp. BvORR071])

HSP 1 Score: 73.1738 bits (178), Expect = 2.480e-12
Identity = 42/119 (35.29%), Postives = 66/119 (55.46%), Query Frame = 0
Query:   29 PVPARWEVRLFLLMGMPADQFLSYIIQNG--VDPVFWHRALYATYISLMAAFFWIPKEEEKYSVEQIEEVPILHPPIFIIGHYRSGTSLLHELLNNDERLVA-PTAFQCYVPRIFLGRE 144
            P+  RW +    L G+ A  +   + +N   VDPV+WHRA   + +S+  +F+ + +E+ +Y  +Q+    I   P+FI+GH+RSGT+ LH LL  D+   A    +Q   P IFL  E
Sbjct:    4 PLKHRWSISHNYLTGITAGDWWRLLEENNFAVDPVYWHRAAVVSVLSVANSFYRL-REDREYG-DQVAATVIGKAPLFILGHWRSGTTHLHNLLAQDDTSFAYANTYQVVNPHIFLTTE 120          
BLAST of EWM20489.1 vs. NCBI_GenBank
Match: gi|502677553|ref|WP_012913265.1| (sulfotransferase family protein [Pirellula staleyi] >gi|283440564|gb|ADB19006.1| hypothetical protein Psta_4359 [Pirellula staleyi DSM 6068])

HSP 1 Score: 68.9366 bits (167), Expect = 8.287e-11
Identity = 36/101 (35.64%), Postives = 59/101 (58.42%), Query Frame = 0
Query:   43 GMPADQFLSYIIQNG--VDPVFWHRALYATYISLMAAFFWIPKEEEKYSVEQIEEVPILHPPIFIIGHYRSGTSLLHELLNNDERLVAPTAFQCYVPRIFL 141
            GM A  +    I++G  + P+ W  A+    I+ + +   + +  +  S  +I+   I  PP+FIIGH+RSGT+ LHE+++ DER  +PT +QC+ P  FL
Sbjct:   41 GMRAGDWWKLCIKHGFRIHPIRWPMAVLLGMITPVNSILRLWQRAQYGS--RIDRTRIEEPPVFIIGHWRSGTTFLHEVMHQDERFYSPTTYQCFAPHHFL 139          
BLAST of EWM20489.1 vs. NCBI_GenBank
Match: gi|1189247139|ref|WP_085670946.1| (hypothetical protein [Mycobacterium szulgai] >gi|1183186371|gb|ORX02654.1| hypothetical protein AWC27_28215 [Mycobacterium szulgai])

HSP 1 Score: 68.5514 bits (166), Expect = 9.918e-11
Identity = 38/106 (35.85%), Postives = 63/106 (59.43%), Query Frame = 0
Query:   40 LLMGMPADQFLSYIIQN--GVDPVFWHRALYATYISLMAAF--FWIPKEEEKYSVEQIEEVPILHPPIFIIGHYRSGTSLLHELLNNDERLVAPTAFQCYVPRIFL 141
            L +G     ++  +I+N   V    WH A+  T++S++ ++  FW    ++ +  +++ + PI  PPIFI+GH+R+GT+LLHELL  DE    PT ++C  P  FL
Sbjct:   20 LWIGCSFSAWIRLLIRNRFAVHWSRWHFAVLYTFLSVVNSYLGFW----QKIWFGKRVAKTPIADPPIFIVGHWRTGTTLLHELLALDEHHTGPTGYECLAPHHFL 121          
BLAST of EWM20489.1 vs. NCBI_GenBank
Match: gi|1068908189|ref|WP_069623589.1| (hypothetical protein [Methyloceanibacter marginalis] >gi|1063655382|gb|ODS03211.1| hypothetical protein AUC71_10860 [Methyloceanibacter marginalis])

HSP 1 Score: 65.855 bits (159), Expect = 1.399e-10
Identity = 34/91 (37.36%), Postives = 50/91 (54.95%), Query Frame = 0
Query:   73 SLMAAFFWIPKE------EEKYSVEQIEEVPILHPPIFIIGHYRSGTSLLHELLNNDERLVAPTAFQCYVPRIFL---GREVH-GQAVCRA 153
              +A F W+P         E     + E +P+  PPIF++GH+RSGT+LLH+L + D  L  PT ++C+ P  FL   GR  H  +  CR+
Sbjct:   67 DTLALFIWVPWNTPLTWISEALYKRKAEALPLDTPPIFVVGHWRSGTTLLHDLFSEDPNLAYPTTYECFFPHHFLLTEGRLDHVSRCSCRS 157          
BLAST of EWM20489.1 vs. NCBI_GenBank
Match: gi|1056707674|ref|WP_068132581.1| (sulfotransferase [Roseimaritima ulvae])

HSP 1 Score: 67.781 bits (164), Expect = 1.706e-10
Identity = 29/47 (61.70%), Postives = 37/47 (78.72%), Query Frame = 0
Query:   98 ILHPPIFIIGHYRSGTSLLHELLNNDERLVAPTAFQCYVPRIFLGRE 144
            +L PP+FI+GH+RSGT+LLHEL+N DERL  P+ FQC+ P  FL  E
Sbjct:   92 LLAPPMFILGHWRSGTTLLHELINKDERLGCPSTFQCFAPHHFLVSE 138          
BLAST of EWM20489.1 vs. NCBI_GenBank
Match: gi|1184693281|ref|WP_085252897.1| (hypothetical protein [Mycobacterium riyadhense])

HSP 1 Score: 67.781 bits (164), Expect = 1.781e-10
Identity = 36/79 (45.57%), Postives = 51/79 (64.56%), Query Frame = 0
Query:   63 WHRALYATYISLMAAFFWIPKEEEKYSVEQIEEVPILHPPIFIIGHYRSGTSLLHELLNNDERLVAPTAFQCYVPRIFL 141
            WH A+  T+IS+M +   +   ++     Q+ +  I  PPIFIIGH+R+GT+LLHELL  D+R  APT F+C  P+ FL
Sbjct:   33 WHFAILYTFISVMNSLLGL--FQKIAFGRQVAKTVIEDPPIFIIGHWRTGTTLLHELLILDDRHTAPTGFECIAPQHFL 109          
BLAST of EWM20489.1 vs. NCBI_GenBank
Match: gi|1200642938|gb|OUX50531.1| (sulfotransferase family protein [bacterium TMED283])

HSP 1 Score: 67.3958 bits (163), Expect = 2.588e-10
Identity = 28/50 (56.00%), Postives = 39/50 (78.00%), Query Frame = 0
Query:   92 QIEEVPILHPPIFIIGHYRSGTSLLHELLNNDERLVAPTAFQCYVPRIFL 141
            ++EE  +  PP+FI+GH+RSGT+LLHEL+  DERL +P+ FQC+ P  FL
Sbjct:   49 KLEEAELHGPPVFIVGHWRSGTTLLHELMVRDERLSSPSTFQCFAPCHFL 98          
BLAST of EWM20489.1 vs. NCBI_GenBank
Match: gi|886316618|emb|CKT95386.1| (Uncharacterised protein [Mycobacterium tuberculosis] >gi|886813007|emb|CKU34029.1| Uncharacterised protein [Mycobacterium tuberculosis])

HSP 1 Score: 65.0846 bits (157), Expect = 2.902e-10
Identity = 37/107 (34.58%), Postives = 60/107 (56.07%), Query Frame = 0
Query:   40 LLMGMPADQFLSYIIQN--GVDPVFWHRALYATYISLMAAFFWIPKEEEKYSVEQIEEVPILHPPIFIIGHYRSGTSLLHELLNNDERLVAPTAFQCYVPRIFLGRE 144
            L +G     ++  +I+N   V    WH A+  T++S++ +   +   ++     ++ E  I  PPIFI+GH+R+GT+LLHELL  D+R   PT ++C  P  FL  E
Sbjct:   20 LWVGCNFSAWMRLLIRNRFAVHHSRWHFAVLYTFLSMVNSC--LGLWQKIVFGRRVAETVIADPPIFIVGHWRTGTTLLHELLVVDDRHTGPTGYECLAPHHFLLTE 124          
The following BLAST results are available for this feature:
BLAST of EWM20489.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585100152|gb|EWM20489.1|2.058e-106100.00hypothetical protein Naga_100382g4 [Nannochloropsi... [more]
gi|585110923|gb|EWM28507.1|3.789e-3046.58hypothetical protein Naga_100058g18 [Nannochlorops... [more]
gi|918704101|ref|WP_052573134.1|2.480e-1235.29sulfotransferase family protein [Haloferula sp. Bv... [more]
gi|502677553|ref|WP_012913265.1|8.287e-1135.64sulfotransferase family protein [Pirellula staleyi... [more]
gi|1189247139|ref|WP_085670946.1|9.918e-1135.85hypothetical protein [Mycobacterium szulgai] >gi|1... [more]
gi|1068908189|ref|WP_069623589.1|1.399e-1037.36hypothetical protein [Methyloceanibacter marginali... [more]
gi|1056707674|ref|WP_068132581.1|1.706e-1061.70sulfotransferase [Roseimaritima ulvae][more]
gi|1184693281|ref|WP_085252897.1|1.781e-1045.57hypothetical protein [Mycobacterium riyadhense][more]
gi|1200642938|gb|OUX50531.1|2.588e-1056.00sulfotransferase family protein [bacterium TMED283... [more]
gi|886316618|emb|CKT95386.1|2.902e-1034.58Uncharacterised protein [Mycobacterium tuberculosi... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna10216rna10216Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications