rna10216, rna10216 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna10216
Unique Name	rna10216
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	4217
Alignment location	KK037266.1:30166..31259 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100382g4.7175.mrna
Orig protein id	gnl\|cribi\|Naga_100382g4.7175
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037266.1	supercontig	KK037266.1:30166..31259 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100382g4	gene9919	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna10216	rna10216-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM20489.1	cds10185	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at KK037266.1:30166..31259+
coding sequence from alignment at KK037266.1:30166..31259+

mRNA sequence

>rna10216 ID=rna10216|Name=rna10216|organism=Nannochloropsis gaditana|type=mRNA|length=4217bp
TTTCATTCAAAGATGTCCTCTGGCCTGCTATCATGCATGCTTACTTAGAT
ATGGTTGTGGCGTTGGTTTGGAAAGCTGTATGTCTGCGAACATCAAGCCA
AATGATTTGTCATCTGGCTACAAAGAATGCCCGATTATGGAAGATTCATC
CGGTCTACCGAGGCTACGAACTGAAAAAAAGAATCTGTGGGCTATATTGC
CGGACCGTCAATAGATTTAACCATTTGGTAGCTGATCAACCATGTACTTG
TATTGCGAGCGGGATAAATTGTATCTTGTGATGCTTGATCATACACATTT
TCCCCGTTAAAACAATGCAGATAACGCTACGCGACACGACATTCTATTAG
CTTTTTGCGGTTGCTTGCAGCCTTTCGTTCTCTTCTCCCTTGCTTTCAGG
CACGAATCATGAGAAAAAGCGATGGGAGCTGGCACGTCATACCTTACAGG
GGTATCTGCTGGAGAAAAGAATCTGGCGGTCTTGCCGGACTTTCGGTGGA
TGCATCCGCTTTCATGGTTGCTGACCACCCACTTGTATGCGTAGATCACG
AATGGGGTTGTGGTATGGTGTGGTACTTTATCGTCCGAGTACACTGGATA
CAGCAGAGCAGATTAAACTGCACAACGTGACATCGAGTATTTGGGCGCAT
GAGCGCAGCCTTCATTCCCTCGTTGCTCTTACTATATAGCACGAATTATG
TAGCCAAGAGATCTTCTATTAGGAACTTCCATCATGGACATGTTTCAGGA
ACGAAAGCGTTGTCGCACGATTGATCTGGTCTTGCCTCACGGAATGCATG
GCTATGAATTCCCGCGGAAAATTTCAAGACGTTCCTTCTTTGTCCAAGAA
GGAGGCTTGTGAGAAATGCTACGTTGCCAAGGTAATGTGTCCAAGCATGT
CCGGTGCTTTTTTATTTTTTGTTCGTCGCGGCGGCCGAGGAGGTATTGTC
AATCCGGGATTCGATCTCACACAAAGATAGACTACAACAACGAGATCAAC
ACCCTTCCCCCCTACCACTTGCTTATAGAGTAAATGCGACCTCAGCCTTC
CTTGCGAGAGGTGCTTCCGCCTAAACTTACCTTGCCGGCCGCGGGCTCGT
GGATCTGTGGATGGGGGAAGTCGGAATGGAACCCGGGTTTGTCCCATTTC
TGCGTTGAAAGGTACGGCAATCGAAAGCGCAGGTTGGCCTCCACAGGAGT
CACTGCCCCAGCTAGGCGGGCATGGCAAAGTGCCGAGGACCGGCGAGGAC
GGCAGGCAATGGACAGAAAGGGGCAGTTACACCAGCACCGAGGCCGATAG
CGAGGACGGGGAGGAGGATGCGGGCGAGGGATGGCGACCCAAAGAGACGA
AAGCGTACCTTTGGAACTCTGCGTGGGGATTACTGCTGGAACGAGCACGC
TTAGACTTCCAGCGTAGCATGGAAACACAAGCTTTGGAAGAGGAATTATT
GACGAAAGGTCAGACCTCGGGAGCATCGGCAAGCGAGGAGGAGGAGGGGG
ACGGGAAGGGGCAGAGCCTTTTAGGGACCATCCTGGAGCGGGTAGACAGG
CCCCGCATGGCTGAACAGTTCTTAGACGCCTTCCACGCGGTGCAGAGGCG
GGGGAAGATACACCGAGAGGGGATGGTGGGTATGCTCCGTCATTGGAAGA
AGCTCTCTGACCTGGCTGGGGAGGATCTGACGCTCGGCATAGGCGCTGCC
ATTGCCAATGCGCTAAAAGTCGAGGCGTGGGAGCTGCAGTACCGCGGGGG
GGATACAGTCAAAAGATCCGAATCTTGGACCGGGGACAGCAGCCTCGGGA
TCATTCATACCCCCAACTCTTTCCAAGGGCGACTCTCATCGAAGCGGTTC
CCCACGACTGTCGAAGAAGGGCCTATGGGACTGCTCTTGGAGGAGGAGCT
GGCGGCTGTGGAGGCCGGTGCCGCGCGACTCAAGGCGTCTCCCCTCTTCC
GGGAGCGCGACGACGGGTACACGGGCCTGCTGCTGATCGAGGTGGACCGA
ACGGAGGACCGAGTCATCGTCGCCAGCAATCAGGCCTACCTGGACGTCTT
CTTGGGCCCCGGCTTCCTTCTCTCCGAGGGCCTGGCGCGGGGCTGCCTTG
AGCCCTTCCTCTTCGCGGCCTTTGTGGCCCATAGCGACAGAGACACCTGG
TTCCGCATGAACCTGGAGGCCCTCTGCTCGCCCCGCTTCCGGCCAGAAAG
GGGAAGGAGGAGGGACGGGGTTCCTCGGCGAGAAAGGCTGCTGTACTCGG
AGTTCCTGAAGATCTTCAGTCGGGATGGTCACGTGCGTCTGTATTGGGCG
CGTCTCGCCCAGTTGGAGGTGAGCATGAGGGAAGGGGAAGAGGAGAAAAT
GCACTTCCTCTTGTGGATGGAACCGGTGCCCGCCTCCCGGTACATCACAG
ACCGCCCGGAGAAGACAACGCAGAGCAAGACCACACTCTTCCGGCAGCGG
CCTAGTGCGGAGACGGGGTCCTTATCGCGGGAAGCAAGGGAGGTCTGTGC
TTCGGTCGGTGAGGGTGAGGAGCTGGGGTGGAGGCCGTTGAAGCTGCAGG
ATTTTTCCGAGACGGAGGAAAAGGGGGATGGGGCATCGTCGGGCTGCGGG
GAAAGACAGCAGGTCGCTCTTCAAAAGAGGAGCCCGCCAAGCTTATTCTT
TCCAGCCCTAGCCTCCGTACCTCTCCCTCCGGGAACCTCCCTTCCCTCTC
TCCCGTCGAGCTGGACTGTAAACACCGACCAAACCAGGGCAGGGCCACCA
CCTGGTTTCCTGTCTCCGTCGGGCTTCCCAACGCCCCCTTTTCTATTTCG
GTCATACTCCCCCTCCCACCCCAGCTCTCGTTATCCCTTGGACTCCCCCG
CATTCCCCATCTCTTCCACGCTCCCGGACATGTTTGAGATCAAGAGCGAC
TTCATCAAGGGTCTACTCCCCGCTGACCCTAAGACCGGGCTTGCGGGCAA
ATCACACGGAGAGAGCACGGTGACGAATCCTGTCGTCGATGTCAAGTGTA
AACATATAACAAAGCGAGAAATGCAGCGAAAGAAAAGTAAGATTTCATGC
GCGCGGAACGAGGGAAAGGCTCAAGGAGTCTTTCAAGTGACGGCCGAGCC
CAAGCACTCGCCAAAGCACCACAAAGAGCAGCAGCAACAAGAACGACAAC
TGCAGCAGCAGCAGCAGCAGCAACAACAAGAACAACAAAATCATCATCAA
CAACAACCAGGGCTGCCGCAGCAACAGCATATGTCCGTCTTCCCAATTTC
GAGATCATCGCAATACCTACCTTCCAGTATAGATATGAAAGGGGAGATGG
AGCAGCAATACCAGAGGCATCCATCAATCTTTTTTCACACATATCAGGAT
CCTTGCTGGGGGGTAAAGGATCATCAGGTTTTTAGACAGACTCACCAGGG
GCATGACTTGAACGTCGATGCATCCATTCTTCCGCCTGTCGCGATGCTGA
ACGAGCAGCAGCTTGACAAGCAGCAAAAGCAGCTAATTCTTCGGCTCTTT
TCTCATGCTCATCGAGAGCATCATTATAAGCAGCATAAGCAGCATACTAC
ATACATAGAAAATCATGAAGCATGCTATCTTCCTTTGGATGGGCGGGAGC
GACGACATAATGCAGACGAAAATGAGGACCTTAGGGGAGCTTACCGGCAT
TGGGACATTCACTCGGAGGAAATCTATGACGATCATCTGCAACCTTACTT
GCAGAGGCAACTTCAACAACACGAGCAAGAGCATGGCTGGTCCACGTCTT
GTTGGCCACCCTCCACGCCATGGCAGGGTGGACAATCTCAACCGATCCAG
CAAGGAGAGCACGGGCACTCGCCTTCTCCGATACCACACTCTACAACCAA
GGTAGGGACTGGACTCTTCTTACTTAGCATGGCAGCCGCGCAGAGGAAGT
AAAATGTGTCATATAATGCTTCCGAGAAACATGGAGCGTGTCGGACGAGT
TGTAGAACTGTAAAAGGCAAGCTATGACGAGCAAGGAAATAAATCAGGTT
TGTAATAAGAATTTCTGTAATGTGCATTGTATTGCTCTAGGGGTTTTCTG
AAGTTAGCACAGGCACGCCATTGTCCAAAGATTGAACCAAGGGAATTGAA
TTAGATGAAAGTTAGGGTTAGGGTTAAGGTTAGTAACCACGCATTTAAGA
TAAGAGATAAAGTCAAGATTAAGGTGAAGGTCATTTTTGGGATCAAAATT
AGTGTGGACGATCATCC

protein sequence of rna10216

>rna10216-protein ID=rna10216-protein|Name=rna10216|organism=Nannochloropsis gaditana|type=polypeptide|length=153bp
MPSLLLWLFILLVLLPAVFLLLLIKLPKPVPARWEVRLFLLMGMPADQFL
SYIIQNGVDPVFWHRALYATYISLMAAFFWIPKEEEKYSVEQIEEVPILH
PPIFIIGHYRSGTSLLHELLNNDERLVAPTAFQCYVPRIFLGREVHGQAV
CRA

mRNA from alignment at KK037266.1:30166..31259+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna10216 ID=rna10216|Name=rna10216|organism=Nannochloropsis gaditana|type=mRNA|length=1094bp|location=Sequence derived from alignment at KK037266.1:30166..31259+ (Nannochloropsis gaditana)
atgccctctctcctcctctggctcttcatccttttggtcctccttcctgc
cgtcttcctccttctactCATCAAGCTTCCCAAACCCGTCCCAGCTCGAT
GGGAGGTGCGGCTTTTCCTGCTCATGGGCATGCCTGCCGATCAATTTTTG
TCCTACATCATCCAGGTAAAGGAAGCGAACATGGTTGCATGGTTGCTTCA
ATCTTTGTTGCAACCTTGGTAATTAATTGCTCGAGAAATCGCCTTCAGGA
CTCGAAGGATGcttacctcctcgctcccgcgactcctccctctctccctc
catcatcccCTTAGAATGGCGTGGATCCTGTTTTCTGGCATCGCGCTTTG
TATGCCACCTACATATCTCTCATGGCAGCATTTTTCTGGATtcccaaaga
ggaggaaaagtacTCAGTGGAACAAATTGAGGAGGTGAGCAaacaggcgg
gagggacaaagaCGGCGTGGATACATTCCCTCCGCGTGGAGCAATTCCTC
ACAGTAATCGATTTATGAAGAGATACATAGAGCATTAGATGAACCCTTGT
GTAAAGTTTGTGATTCATACTCAtatctccccttcctccctcgcacaCCC
CACCTTTCCTctaccccgtcctccccttccttccccctcttgccctcttt
tcttctctttcccggcTCCCAGGTCCCCATCCTTCATCCCCCCATTTTCA
TCATCGGCCACTACCGGAGCGGCACCTCCCTTCTGCATGAGCTCTTGAAC
AACGACGAGAGATTGGTTGCCCCCACGGCCTTCCAATGCTACGTTCCGCG
GATATTcttgggaagggaggtgcgggacgatggaagggggggataCTCGA
TACTGGCAGAGGACGATCGAAGCCAAGGTTCTTTTGCGATGCGGCGTCCC
TCACATTCTTGTCTCGTGCGATTTGCGCGGAGGGGggcgcctcgccctct
tcctcctccttgctctggGCCGTGGCCCTCTCTTTTGTGGCTCTCCTTAC
CAAtgcttcccttccgcccctctcattcccccctctgccAATCCCTCATT
TCGTCCTTCTAGAGGTTCATGGCCAAGCAGTTTGCAGGGCTTGA

Coding sequence (CDS) from alignment at KK037266.1:30166..31259+

>rna10216 ID=rna10216|Name=rna10216|organism=Nannochloropsis gaditana|type=CDS|length=1848bp|location=Sequence derived from alignment at KK037266.1:30166..31259+ (Nannochloropsis gaditana)
atgccctctctcctcctctggctcttcatccttttggtcctccttcctgc
cgtcttcctccttctactCATCAAGCTTCCCAAACCCGTCCCAGCTCGAT
GGGAGGTGCGGCTTTTCCTGCTCATGGGCATGCCTGCCGATCAATTTTTG
TCCTACATCATCCAGAATGGCGTGGATCCTGTTTTCTGGCATCGCGCTTT
GTATGCCACCTACATATCTCTCATGGCAGCATTTTTCTGGATtcccaaag
aggaggaaaagtacTCAGTGGAACAAATTGAGGAGGTCCCCATCCTTCAT
CCCCCCATTTTCATCATCGGCCACTACCGGAGCGGCACCTCCCTTCTGCA
TGAGCTCTTGAACAACGACGAGAGATTGGTTGCCCCCACGGCCTTCCAAT
GCTACGTTCCGCGGATATTcttgggaagggagGTTCATGGCCAAGCAGTT
TGCAGGGCTTGAatgccctctctcctcctctggctcttcatccttttggt
cctccttcctgccgtcttcctccttctactCATCAAGCTTCCCAAACCCG
TCCCAGCTCGATGGGAGGTGCGGCTTTTCCTGCTCATGGGCATGCCTGCC
GATCAATTTTTGTCCTACATCATCCAGAATGGCGTGGATCCTGTTTTCTG
GCATCGCGCTTTGTATGCCACCTACATATCTCTCATGGCAGCATTTTTCT
GGATtcccaaagaggaggaaaagtacTCAGTGGAACAAATTGAGGAGGTC
CCCATCCTTCATCCCCCCATTTTCATCATCGGCCACTACCGGAGCGGCAC
CTCCCTTCTGCATGAGCTCTTGAACAACGACGAGAGATTGGTTGCCCCCA
CGGCCTTCCAATGCTACGTTCCGCGGATATTcttgggaagggagGTTCAT
GGCCAAGCAGTTTGCAGGGCTTGAatgccctctctcctcctctggctctt
catccttttggtcctccttcctgccgtcttcctccttctactCATCAAGC
TTCCCAAACCCGTCCCAGCTCGATGGGAGGTGCGGCTTTTCCTGCTCATG
GGCATGCCTGCCGATCAATTTTTGTCCTACATCATCCAGAATGGCGTGGA
TCCTGTTTTCTGGCATCGCGCTTTGTATGCCACCTACATATCTCTCATGG
CAGCATTTTTCTGGATtcccaaagaggaggaaaagtacTCAGTGGAACAA
ATTGAGGAGGTCCCCATCCTTCATCCCCCCATTTTCATCATCGGCCACTA
CCGGAGCGGCACCTCCCTTCTGCATGAGCTCTTGAACAACGACGAGAGAT
TGGTTGCCCCCACGGCCTTCCAATGCTACGTTCCGCGGATATTcttggga
agggagGTTCATGGCCAAGCAGTTTGCAGGGCTTGAatgccctctctcct
cctctggctcttcatccttttggtcctccttcctgccgtcttcctccttc
tactCATCAAGCTTCCCAAACCCGTCCCAGCTCGATGGGAGGTGCGGCTT
TTCCTGCTCATGGGCATGCCTGCCGATCAATTTTTGTCCTACATCATCCA
GAATGGCGTGGATCCTGTTTTCTGGCATCGCGCTTTGTATGCCACCTACA
TATCTCTCATGGCAGCATTTTTCTGGATtcccaaagaggaggaaaagtac
TCAGTGGAACAAATTGAGGAGGTCCCCATCCTTCATCCCCCCATTTTCAT
CATCGGCCACTACCGGAGCGGCACCTCCCTTCTGCATGAGCTCTTGAACA
ACGACGAGAGATTGGTTGCCCCCACGGCCTTCCAATGCTACGTTCCGCGG
ATATTcttgggaagggagGTTCATGGCCAAGCAGTTTGCAGGGCTTGA

Synonyms

Publications