EWM20492.1, cds10181 (CDS) Nannochloropsis gaditana

Overview
NameEWM20492.1
Unique Namecds10181
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037266.1:14933..15161 -
Alignment locationKK037266.1:14616..14740 -
Alignment locationKK037266.1:14293..14441 -

Link to JBrowse

Properties
Property NameValue
Start range14293
Start range.
Protein idEWM20492.1
Productelongation factor ts
Partialtrue
Orig transcript idgnl|cribi|Naga_101055g1.7183.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037266.1supercontigKK037266.1:14933..15161 -
KK037266.1supercontigKK037266.1:14616..14740 -
KK037266.1supercontigKK037266.1:14293..14441 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0008135translation factor activity, RNA binding
GO:0005515protein binding
GO:0003746translation elongation factor activity
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
GO:0005622intracellular
Vocabulary: Biological Process
TermDefinition
GO:0006414translational elongation
Vocabulary: INTERPRO
TermDefinition
IPR009060UBA-like
IPR018101Transl_elong_Ts_CS
IPR001816Transl_elong_EFTs/EF1B
IPR000449UBA/Ts_N
IPR014039Transl_elong_EFTs/EF1B_dimer
Homology
BLAST of EWM20492.1 vs. NCBI_GenBank
Match: gi|585100156|gb|EWM20492.1| (elongation factor ts, partial [Nannochloropsis gaditana])

HSP 1 Score: 334.339 bits (856), Expect = 5.272e-116
Identity = 168/168 (100.00%), Postives = 168/168 (100.00%), Query Frame = 0
Query:    1 MRVTTSLLCAAVGLVLQQATAFLSPASFPSSKPASATVLRMAAEAVEVPMDLIKKLRGMSGAPIMDCKKALAEEKLDVEAAFDWLRKKGQATIAKRDRATKEGLVALAVDGTRGVAVEVNSETDFVARNADFQGFVAGAAKTALGLTQGAKPGVSDMEHAALIAVRGG 168
            MRVTTSLLCAAVGLVLQQATAFLSPASFPSSKPASATVLRMAAEAVEVPMDLIKKLRGMSGAPIMDCKKALAEEKLDVEAAFDWLRKKGQATIAKRDRATKEGLVALAVDGTRGVAVEVNSETDFVARNADFQGFVAGAAKTALGLTQGAKPGVSDMEHAALIAVRGG
Sbjct:    1 MRVTTSLLCAAVGLVLQQATAFLSPASFPSSKPASATVLRMAAEAVEVPMDLIKKLRGMSGAPIMDCKKALAEEKLDVEAAFDWLRKKGQATIAKRDRATKEGLVALAVDGTRGVAVEVNSETDFVARNADFQGFVAGAAKTALGLTQGAKPGVSDMEHAALIAVRGG 168          
BLAST of EWM20492.1 vs. NCBI_GenBank
Match: gi|585111101|gb|EWM28678.1| (elongation factor ts [Nannochloropsis gaditana])

HSP 1 Score: 123.635 bits (309), Expect = 8.219e-31
Identity = 67/114 (58.77%), Postives = 79/114 (69.30%), Query Frame = 0
Query:   49 PMDLIKKLRGMSGAPIMDCKKALAEEKLD--VEAAFDWLRKKGQATIAKRDRATKEGLVALAVDGTRGVAVEVNSETDFVARNADFQGFV---AGA---AKTALGLTQGAKPGV 154
            P+ L+K+LR  SGAPI DCKKAL  E +D  +  AF+WLRKKGQAT+ K +RA  EGLV +AV+G  GV VEVNSETDFVARNADFQ FV   AGA       +G+  G  P V
Sbjct:   37 PLALVKELRSASGAPITDCKKALEAEGVDGDIAKAFEWLRKKGQATVMKNNRAANEGLVGIAVEGQAGVIVEVNSETDFVARNADFQAFVKDLAGAILRMPPTVGMDGGPAPSV 150          
BLAST of EWM20492.1 vs. NCBI_GenBank
Match: gi|1189750508|ref|WP_085795613.1| (translation elongation factor Ts [Tropicibacter litoreus] >gi|1188041075|emb|SLN40692.1| Elongation factor Ts [Tropicibacter litoreus R37])

HSP 1 Score: 117.087 bits (292), Expect = 6.507e-29
Identity = 62/96 (64.58%), Postives = 72/96 (75.00%), Query Frame = 0
Query:   52 LIKKLRGMSGAPIMDCKKALAEEKLDVEAAFDWLRKKGQATIAKRD-RATKEGLVALAVDGTRGVAVEVNSETDFVARNADFQGFVAGAAKTALGL 146
            L+K+LR  +GA +MD KKAL E   D+EAA DWLR KG A  AK+  R   EGLVA+ VDG +GVAVEVNSETDFVA+NADFQ FV G AK ALG+
Sbjct:    7 LVKELRDSTGAGMMDAKKALTETDGDMEAAVDWLRTKGLAKAAKKSGRTAAEGLVAVVVDGGKGVAVEVNSETDFVAKNADFQEFVGGIAKAALGV 102          
BLAST of EWM20492.1 vs. NCBI_GenBank
Match: gi|914215189|ref|WP_050531434.1| (elongation factor Ts [Aestuariivita atlantica] >gi|910302295|gb|KNG92947.1| elongation factor Ts [Aestuariivita atlantica])

HSP 1 Score: 116.316 bits (290), Expect = 1.399e-28
Identity = 60/96 (62.50%), Postives = 72/96 (75.00%), Query Frame = 0
Query:   53 IKKLRGMSGAPIMDCKKALAEEKLDVEAAFDWLRKKGQATIAKRD-RATKEGLVALAVDGTRGVAVEVNSETDFVARNADFQGFVAGAAKTALGLT 147
            +K+LR M+GA +MD KKAL E   D+EAA DWLR KG A  AK+  R   EGLVA+ VDG RGVAVEVN+ETDFVA+NADFQ  V+G A  ALG++
Sbjct:    8 VKELREMTGAGMMDAKKALTENDGDIEAAIDWLRTKGLAKAAKKSGRVAAEGLVAVKVDGGRGVAVEVNAETDFVAKNADFQSMVSGIADAALGVS 103          
BLAST of EWM20492.1 vs. NCBI_GenBank
Match: gi|503841876|ref|WP_014075870.1| (elongation factor Ts [Sphingobium sp. SYK-6] >gi|345136610|dbj|BAK66219.1| elongation factor Ts [Sphingobium sp. SYK-6])

HSP 1 Score: 116.316 bits (290), Expect = 1.691e-28
Identity = 62/93 (66.67%), Postives = 70/93 (75.27%), Query Frame = 0
Query:   53 IKKLRGMSGAPIMDCKKALAEEKLDVEAAFDWLRKKGQATIAKRD-RATKEGLVALAVDGTRGVAVEVNSETDFVARNADFQGFVAGAAKTAL 144
            +K+LR  SGA +MDCKKALAE   DVEAA DWLR KG A   K+  R   EGLVA+AVDGT+GVAVEVNSETDFVA+N  FQ FV  AA+ AL
Sbjct:    9 VKELRERSGAGMMDCKKALAETDGDVEAAVDWLRAKGLAAAQKKSSRTAAEGLVAVAVDGTKGVAVEVNSETDFVAKNEQFQNFVRAAAEVAL 101          
BLAST of EWM20492.1 vs. NCBI_GenBank
Match: gi|1097297709|emb|SFS10485.1| (translation elongation factor Ts (EF-Ts) [Loktanella litorea])

HSP 1 Score: 115.931 bits (289), Expect = 1.788e-28
Identity = 60/95 (63.16%), Postives = 73/95 (76.84%), Query Frame = 0
Query:   52 LIKKLRGMSGAPIMDCKKALAEEKLDVEAAFDWLRKKGQATIAKRD-RATKEGLVALAVDGTRGVAVEVNSETDFVARNADFQGFVAGAAKTALG 145
            ++K+LR  +GA +MD KKAL E   D+EAA DWLR KG A  AK+  R   EGLVA+AV+G +G+AVEVNSETDFVA+NADFQ  VAG A+TALG
Sbjct:    7 MVKELRDSTGAGMMDAKKALTENDGDMEAAVDWLRTKGLAKAAKKSGRTAAEGLVAVAVEGGKGIAVEVNSETDFVAKNADFQKMVAGIAQTALG 101          
BLAST of EWM20492.1 vs. NCBI_GenBank
Match: gi|1189788453|ref|WP_085825224.1| (translation elongation factor Ts [Roseovarius gaetbuli] >gi|1188024271|emb|SLN11156.1| Elongation factor Ts [Roseovarius gaetbuli])

HSP 1 Score: 115.161 bits (287), Expect = 3.173e-28
Identity = 61/95 (64.21%), Postives = 72/95 (75.79%), Query Frame = 0
Query:   52 LIKKLRGMSGAPIMDCKKALAEEKLDVEAAFDWLRKKGQATIAKRD-RATKEGLVALAVDGTRGVAVEVNSETDFVARNADFQGFVAGAAKTALG 145
            ++K+LR  +GA +MD KKAL E   D+EAA DWLR KG A  AK+  R   EGLVA+ V+G RGVAVEVNSETDFVA+NA+FQG VAG AK ALG
Sbjct:    7 MVKELRDSTGAGMMDAKKALTETDGDMEAAVDWLRTKGLAKAAKKSGRTAAEGLVAVQVEGGRGVAVEVNSETDFVAKNAEFQGMVAGIAKAALG 101          
BLAST of EWM20492.1 vs. NCBI_GenBank
Match: gi|1120329338|ref|WP_073194194.1| (translation elongation factor Ts [Roseovarius marisflavi] >gi|1110107667|emb|SHK80501.1| translation elongation factor Ts (EF-Ts) [Roseovarius marisflavi])

HSP 1 Score: 115.161 bits (287), Expect = 3.310e-28
Identity = 61/95 (64.21%), Postives = 72/95 (75.79%), Query Frame = 0
Query:   52 LIKKLRGMSGAPIMDCKKALAEEKLDVEAAFDWLRKKGQATIAKRD-RATKEGLVALAVDGTRGVAVEVNSETDFVARNADFQGFVAGAAKTALG 145
            ++K+LR  +GA +MD KKAL E   D+EAA DWLR KG A  AK+  R   EGLVA+ V+G RGVAVEVNSETDFVA+NA+FQG VAG AK ALG
Sbjct:    7 MVKELRDSTGAGMMDAKKALTETDGDMEAAVDWLRTKGLAKAAKKSGRTAAEGLVAVQVEGGRGVAVEVNSETDFVAKNAEFQGMVAGIAKAALG 101          
BLAST of EWM20492.1 vs. NCBI_GenBank
Match: gi|737263850|ref|WP_035247790.1| (elongation factor Ts [Actibacterium atlanticum] >gi|628971195|gb|KCV83689.1| elongation factor Ts [Actibacterium atlanticum])

HSP 1 Score: 115.161 bits (287), Expect = 3.920e-28
Identity = 61/96 (63.54%), Postives = 73/96 (76.04%), Query Frame = 0
Query:   52 LIKKLRGMSGAPIMDCKKALAEEKLDVEAAFDWLRKKGQATIAKRD-RATKEGLVALAVDGTRGVAVEVNSETDFVARNADFQGFVAGAAKTALGL 146
            L+K+LR  +GA +MD KKAL E   D+EAA DWLR KG A  AK+  R   EGLVA+AV+G +GVAVEVNSETDFVA+NA+FQG V G AK ALG+
Sbjct:    7 LVKELRDSTGAGMMDAKKALTETDGDMEAAVDWLRTKGLAKAAKKSGRTAAEGLVAVAVEGGKGVAVEVNSETDFVAKNAEFQGMVGGIAKAALGV 102          
BLAST of EWM20492.1 vs. NCBI_GenBank
Match: gi|1200523081|gb|OUW36185.1| (translation elongation factor Ts [Alphaproteobacteria bacterium TMED176])

HSP 1 Score: 115.161 bits (287), Expect = 4.411e-28
Identity = 59/95 (62.11%), Postives = 70/95 (73.68%), Query Frame = 0
Query:   52 LIKKLRGMSGAPIMDCKKALAEEKLDVEAAFDWLRKKGQATIAKRD-RATKEGLVALAVDGTRGVAVEVNSETDFVARNADFQGFVAGAAKTALG 145
            L+K+LR  SGA +MDCKKALAE   D+EAA DWLR KG AT AK+  R   EGLVA  VDGT+G  +E+N+ETDFVARN +FQ F +  AK ALG
Sbjct:    7 LVKELREKSGAGMMDCKKALAETDGDMEAAVDWLRTKGLATAAKKSGRVASEGLVAFCVDGTKGAVIELNAETDFVARNTEFQEFASTLAKLALG 101          
The following BLAST results are available for this feature:
BLAST of EWM20492.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585100156|gb|EWM20492.1|5.272e-116100.00elongation factor ts, partial [Nannochloropsis gad... [more]
gi|585111101|gb|EWM28678.1|8.219e-3158.77elongation factor ts [Nannochloropsis gaditana][more]
gi|1189750508|ref|WP_085795613.1|6.507e-2964.58translation elongation factor Ts [Tropicibacter li... [more]
gi|914215189|ref|WP_050531434.1|1.399e-2862.50elongation factor Ts [Aestuariivita atlantica] >gi... [more]
gi|503841876|ref|WP_014075870.1|1.691e-2866.67elongation factor Ts [Sphingobium sp. SYK-6] >gi|3... [more]
gi|1097297709|emb|SFS10485.1|1.788e-2863.16translation elongation factor Ts (EF-Ts) [Loktanel... [more]
gi|1189788453|ref|WP_085825224.1|3.173e-2864.21translation elongation factor Ts [Roseovarius gaet... [more]
gi|1120329338|ref|WP_073194194.1|3.310e-2864.21translation elongation factor Ts [Roseovarius mari... [more]
gi|737263850|ref|WP_035247790.1|3.920e-2863.54elongation factor Ts [Actibacterium atlanticum] >g... [more]
gi|1200523081|gb|OUW36185.1|4.411e-2862.11translation elongation factor Ts [Alphaproteobacte... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna10212rna10212Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications