rna10167, rna10167 (mRNA) Nannochloropsis gaditana

Overview
Namerna10167
Unique Namerna10167
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1332
Alignment locationKK037264.1:35675..36253 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101500g3.10237.mrna
Orig protein idgnl|cribi|Naga_101500g3.10237
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037264.1supercontigKK037264.1:35675..36253 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101500g3gene9870Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna10167rna10167-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM20536.1cds10136Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna10167 ID=rna10167|Name=rna10167|organism=Nannochloropsis gaditana|type=mRNA|length=1332bp
GCGAGCGAAAGTGGCACGGGGTACCCCCCCGGGTCAGCGCAATGTCATGA
CCAAGAGTAAGAGTTGAGGTAAAATGTTGACCGAAATATGCATAGGAACG
AGGATGATGTGTTGCGAGACGAGAGACTGGCATGTTGGAATTTAGGCGTC
GTGTGGAAGCCGCTTGAATATACGCCCAGTGCAACCGGATTTGGCTGCTT
TTCGACTTCCAATTTCCTATTTGGAGGAAGTATCCCATACAAATTACCTA
AAATGCTACGAAATCCTGACTTGAATTACGATACAAGAGAGTCTCACTTT
TTTTTGGGAAAATTTTGACGCTCCGTCGCGTTTCTTATCCGGCCTTGACA
TAGCGCTCCCTTTGACTAATGATACCACCTACTCAATACCCCAGTGTCAA
AAGGACTGGAAAAATGTTCTATGTTCACCTGTCTTTCAATTACGATTATA
GATCACATTTGTTGTAATTTGTCGGCTCATCTTCTCTTTTCTCGCTCTTT
TTCCCTGTATTTTATCACCTCCCGTGACGTTGCACTTCGCGAAAATCTTC
GCCCCTGCTAGGCACTTCCTAGCCTTCTCCTCTTCCATTCACCACCATTA
TCAATCTTCTCCTCCAGCACCGGCGTCACTGCCTCATCGCTTTCCTCGTC
ACCCGACCCCATCCACCTACTCCCCTCCCCTCTCCCCCTCTCTCGTCCCT
ACCGGCCATGTCCCTCCCGGGCAACCCCATCAAATCTGCCACTGCCGTGC
TTTCCTCCTCGTCCTCCTCGCTTTCATCTCCCTTGCTTCCGCGGTCCTTT
GTCCCGCTTCCCAACACCTGGGGGCTGTCGGACGAGGGAGTGAAGCAGCT
CCCGATCACGCGGCCAAAGGAAGGGAGGGCTTCCGAGGAGGAAGCGGACC
GCCGACAGGAGAGCCCTCTCTACACGCTGATACAGTGGAACGTGATGGCC
GACGCCTTCTCCTCCCCCTCCCTCTACACCCGGGTGGACCCCCCGGGCCT
CATGGCGTGGCTCTACCGGCGAGAGAAGGTTCTAGAAGAAGTCACGCGAT
GGAACCCAGACGTCGTGACCCTCCAGGAAATCGACCACTACTTCGACGAC
CTCCTTCCCGCCTTCACCTCCCTTGGCTATACCGGTGCCTTTGTGCGGAA
ACCGCTGAACATGGATGGTACCTGCCCTCCCTCCCTCCCTCCCTCCCTCC
CTCCCTCCCTCCCTCCCTCCTTCTTCTTCTGCTTTCCCTCCTCTATTCCC
CGCATGCCTATCGTTCTCCTCCCGTTTCGATTCCCTCTCTTCACGCTTTG
CGTACCGAGTCAAGCCCTCCCTCCCTTCCTCC
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protein sequence of rna10167

>rna10167-protein ID=rna10167-protein|Name=rna10167|organism=Nannochloropsis gaditana|type=polypeptide|length=159bp
MSLSTSFPLPPHQFHFLPLPSSSSLLPSPSLFTTWKFRPYPSSSSSSSSS
SSSSSSSSSSAPSRPREVETRHCIDYIFVLPNPSPLPPSSSSSSSSSSSS
SSSSSSLLPTHLLSIPTLSQIGPQALPCPSYPSDHLAIGMRFRYLRKDEG
GEGGAGIPR
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mRNA from alignment at KK037264.1:35675..36253+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna10167 ID=rna10167|Name=rna10167|organism=Nannochloropsis gaditana|type=mRNA|length=579bp|location=Sequence derived from alignment at KK037264.1:35675..36253+ (Nannochloropsis gaditana)
ttctccttgttaTTTCCTATCCGCATCCTCACGCCtatcctctccctttc
tcctccttcttccttatccctcctgcctgctcctcctctgtctctcctCA
TGTCGctctctacctccttccccctccctccccatcaattccatttcctc
cctcttccctcctcatcatcccttctccccaGTCCCAGCCTCTTCACCAC
CTGGAAATTTCGACCctatccttcctcctcctcctcctcctcctcctcct
cctcctcctcctcctcctcctcctcctccgccccctctcGCCCGCGCGAG
GTTGAAACCAGGCACTGCATCGACTACATCTTTGTCCTTCCAAACCcatc
acccctccctccttcttcttcttcctcctcctcttcctcctcctcctcct
cctcctcctcctcctcccttcttccaactcacctcctctccatccctacc
TTAAGTCAAATCGGTCCGCAAGCTCTTCCATGCCCATCATACCCGTCCGA
CCACCTTGCCATCGGGATGCGGTTTCGTTATCTGAGGaaggatgaagggg
gggagggaggtgcaggaATTCCGCGATGA
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Coding sequence (CDS) from alignment at KK037264.1:35675..36253+

>rna10167 ID=rna10167|Name=rna10167|organism=Nannochloropsis gaditana|type=CDS|length=480bp|location=Sequence derived from alignment at KK037264.1:35675..36253+ (Nannochloropsis gaditana)
ATGTCGctctctacctccttccccctccctccccatcaattccatttcct
ccctcttccctcctcatcatcccttctccccaGTCCCAGCCTCTTCACCA
CCTGGAAATTTCGACCctatccttcctcctcctcctcctcctcctcctcc
tcctcctcctcctcctcctcctcctcctccgccccctctcGCCCGCGCGA
GGTTGAAACCAGGCACTGCATCGACTACATCTTTGTCCTTCCAAACCcat
cacccctccctccttcttcttcttcctcctcctcttcctcctcctcctcc
tcctcctcctcctcctcccttcttccaactcacctcctctccatccctac
cTTAAGTCAAATCGGTCCGCAAGCTCTTCCATGCCCATCATACCCGTCCG
ACCACCTTGCCATCGGGATGCGGTTTCGTTATCTGAGGaaggatgaaggg
ggggagggaggtgcaggaATTCCGCGATGA
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Synonyms
Publications