rna10162, rna10162 (mRNA) Nannochloropsis gaditana

Overview
Namerna10162
Unique Namerna10162
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length625
Alignment locationKK037264.1:25028..26820 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100683g1.6891.mrna
Orig protein idgnl|cribi|Naga_100683g1.6891
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037264.1supercontigKK037264.1:25028..26820 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100683g1gene9865Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna10162rna10162-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM20542.1cds10131Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna10162 ID=rna10162|Name=rna10162|organism=Nannochloropsis gaditana|type=mRNA|length=625bp
GACAGGTTTTGATTTTAGGAAGAATGACAGTCTCAGCCATAGCGGATATC
GTTCTCCGCCAACTTTTGGTCCGAGGTACAGCCCTGCTCCTCCCTTCCTT
CCTCCCTTCCTTCCTTCTTCACCCTATTAGGGTTAGCCCGCGTTTTTCGC
AACCATTTCAACGGCAAAAGCCGTCATGGCCTCACTGCCTCGTTGATCAT
ACCTTCACAAACCTACTGTATGTGGCTTTCATTTTCTCATTTTTCCTCCC
TTTTTGATGTCGGGGGCTGCGTGACCCCGCTACTTGGTTATACACCAGAA
GTGAGCGAGACGGCGGCCGGGGAGGAACCTACCGCCCCTGAAGAAGGTGT
CTCGCACGAATTCGGCGCTCTGAACACGCTTCTTTTGGTCCTGGTGCTTG
GTCTCTGCATCCTCTCGGCATACCTGGTGAAAGCTTACAAATTCTACTAT
CTCCCAGAATCCGCTGCTGCCATCCTGGTGGGTCTCCTCGTGGGGGGCTT
GGCCCGAGCCTTCTCCCCCACCAAGGATGAATTGGACTTTCTCTCCTTTC
GACCGGAGCTTTTCTTCTTCCTCTTCTTGCCGCCCATTATTTTTGAAGCA
GGTAGGGAGGGAGGGAGGGAGGGAG
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protein sequence of rna10162

>rna10162-protein ID=rna10162-protein|Name=rna10162|organism=Nannochloropsis gaditana|type=polypeptide|length=173bp
MFSTNDLEMPIAACDEPQVSSPREGGFESSSFQRRRCSTTGSFGPPDVER
PHRGIHRFWKDFDRRYMKPTFGGQGEGEEEGPYSEREGGRGEGAEEEEDL
LVCARASEQAGEKVQDYIEQRYNHPKLPKPPGLPSQQQPPTRFQSGGSDS
WLDGSGLASEANNSNSNNGFNAS
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mRNA from alignment at KK037264.1:25028..26820+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna10162 ID=rna10162|Name=rna10162|organism=Nannochloropsis gaditana|type=mRNA|length=1793bp|location=Sequence derived from alignment at KK037264.1:25028..26820+ (Nannochloropsis gaditana)
AAGATTCAATCCTCTCATCGAAGATTCCTGGTGTCCGCGCCCCCTTGCAG
GTCAAACCCAGCATGTTCAGCACCAACGATTTGGAGATGCCCATCGCGGC
GTGTGACGAGGTAATGCGGACCTATAATTGATCTTTTCATGCTGCCGCCC
CTCACCCTTATTTTTCTGAATTTATATCCTTGATTTTTACCTTCTTTGTc
gtcccccccttttttttatCCGCTGACTCgttctcttctttcccagTCGT
TTCAACTGCTCCTGCGCGCCTtgtgccccccttccctccctccttctcat
cctccctccctccctccttccgccctttccctgctgctCTCAGCCTCAGG
TGTCTTCCCcacgggagggcgggttcGAATCCTCATCTTTTCAACGCAGA
AGGTGCAGCACGACGGGGAGTTTCGGCCCGCCGGACGTGGAACGACCGCA
CCGAGGCATCCACCGGTTttggaaggtagggagggagggagggagggagg
gaagtcgaggggaaaagacacGAAGCcctgcctttctttttttgcgtCTT
ACGTTTCGGAATTGGGGCTCATGCGTTTGTGGAGTTGCACTTTATCGtct
attccctccctcttccccatcatgtttccccgcccttcccctcctcttcc
ccgcagGATTTCGACCGGCGATACATGAAACCGACCTTTGGCGgtcaagg
cgaaggggaggaggagggtccgTACTcagaacgggagggagggagggggg
agggggcggaggaagaggaggatttgTTGGTGTGTGCGAGGGCTTCCGAA
CAAGCAGGGGAGAAGGTccaggtgagggaggaggggagggagggagggag
ggagggaggctgggtGTGAAAGGGAAACAAACAGGTGGTTGTGCCAAATA
GGACAAAGGAAAGATCAacggagggtgaggagagggagccagggggggag
gaaggttgaGACGAAGCAGGGATAGCGCCTCAAACAAAGGCATTTCGGGC
ACAAACGTTAACCGCCACGGCAACCCCGATATCTCCATCCTGATCAGGAC
TATATCGAGCAGCGCTATAATCACCCCAAGCTACCCAAACCACCAGGCCT
GCCGTCACAGCAGCAACCACCAACCCGGTTCCAGAGTGGGGGGTCCGACA
GCTGGTTGGATGGTAGCGGTCTAGCTAGCGAGGcgaacaacagcaacagc
aataATGGCTTCAATGCGTCTTAGTTAGGCATTAATGCTGCGCAGTTGAA
AGAACAttgggggaaatggaggggtgGAAAGACGCTGAAGATAAATATTG
CTTGCACAAAGCGTTATGGAAATACAGTGATATCCTCATGAAATAATCGC
AATGTCAAAATCAGAAAGTGCCTTCGAGACAAAAAAAGGAAATTACCGGA
AGACTTGCGGAGAACAAGGCTTTTTTAAGGGGGGCTCTGTCAAATTTTCG
AGTATTACATTGACATAATTAGGTTCTTTATATACATGTGTGCATTCATG
TCAAGGCCAAACCATCGACGCGGGTCACAAGTTCGATCGATCAATGAAAA
TTACAGCTTTACGCACACAGTCATATtcgtccctccttttttgaaGAAAC
GATATCAAAGGAGTGTTGAGGGAACTGCTCTTGCTACAGCCGGTACAGCT
TTATGCATAACTCCACGGCACCCATAGAAAGGAAGCTGGAAATCCGCAgc
cgctgcagctgctggtATAGGATCCATGATTAACACTTGTATTACTTGTC
ACACGTGCCGAATACACATTAGCTGCGTACCGGAAAAGGGACA
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Coding sequence (CDS) from alignment at KK037264.1:25028..26820+

>rna10162 ID=rna10162|Name=rna10162|organism=Nannochloropsis gaditana|type=CDS|length=2088bp|location=Sequence derived from alignment at KK037264.1:25028..26820+ (Nannochloropsis gaditana)
ATGTTCAGCACCAACGATTTGGAGATGCCCATCGCGGCGTGTGACGAGCC
TCAGGTGTCTTCCCcacgggagggcgggttcGAATCCTCATCTTTTCAAC
GCAGAAGGTGCAGCACGACGGGGAGTTTCGGCCCGCCGGACGTGGAACGA
CCGCACCGAGGCATCCACCGGTTttggaagGATTTCGACCGGCGATACAT
GAAACCGACCTTTGGCGgtcaaggcgaaggggaggaggagggtccgTACT
cagaacgggagggagggaggggggagggggcggaggaagaggaggatttg
TTGGTGTGTGCGAGGGCTTCCGAACAAGCAGGGGAGAAGGTccagGACTA
TATCGAGCAGCGCTATAATCACCCCAAGCTACCCAAACCACCAGGCCTGC
CGTCACAGCAGCAACCACCAACCCGGTTCCAGAGTGGGGGGTCCGACAGC
TGGTTGGATGGTAGCGGTCTAGCTAGCGAGGcgaacaacagcaacagcaa
taATGGCTTCAATGCGTCTTAGATGTTCAGCACCAACGATTTGGAGATGC
CCATCGCGGCGTGTGACGAGCCTCAGGTGTCTTCCCcacgggagggcggg
ttcGAATCCTCATCTTTTCAACGCAGAAGGTGCAGCACGACGGGGAGTTT
CGGCCCGCCGGACGTGGAACGACCGCACCGAGGCATCCACCGGTTttgga
agGATTTCGACCGGCGATACATGAAACCGACCTTTGGCGgtcaaggcgaa
ggggaggaggagggtccgTACTcagaacgggagggagggaggggggaggg
ggcggaggaagaggaggatttgTTGGTGTGTGCGAGGGCTTCCGAACAAG
CAGGGGAGAAGGTccagGACTATATCGAGCAGCGCTATAATCACCCCAAG
CTACCCAAACCACCAGGCCTGCCGTCACAGCAGCAACCACCAACCCGGTT
CCAGAGTGGGGGGTCCGACAGCTGGTTGGATGGTAGCGGTCTAGCTAGCG
AGGcgaacaacagcaacagcaataATGGCTTCAATGCGTCTTAGATGTTC
AGCACCAACGATTTGGAGATGCCCATCGCGGCGTGTGACGAGCCTCAGGT
GTCTTCCCcacgggagggcgggttcGAATCCTCATCTTTTCAACGCAGAA
GGTGCAGCACGACGGGGAGTTTCGGCCCGCCGGACGTGGAACGACCGCAC
CGAGGCATCCACCGGTTttggaagGATTTCGACCGGCGATACATGAAACC
GACCTTTGGCGgtcaaggcgaaggggaggaggagggtccgTACTcagaac
gggagggagggaggggggagggggcggaggaagaggaggatttgTTGGTG
TGTGCGAGGGCTTCCGAACAAGCAGGGGAGAAGGTccagGACTATATCGA
GCAGCGCTATAATCACCCCAAGCTACCCAAACCACCAGGCCTGCCGTCAC
AGCAGCAACCACCAACCCGGTTCCAGAGTGGGGGGTCCGACAGCTGGTTG
GATGGTAGCGGTCTAGCTAGCGAGGcgaacaacagcaacagcaataATGG
CTTCAATGCGTCTTAGATGTTCAGCACCAACGATTTGGAGATGCCCATCG
CGGCGTGTGACGAGCCTCAGGTGTCTTCCCcacgggagggcgggttcGAA
TCCTCATCTTTTCAACGCAGAAGGTGCAGCACGACGGGGAGTTTCGGCCC
GCCGGACGTGGAACGACCGCACCGAGGCATCCACCGGTTttggaagGATT
TCGACCGGCGATACATGAAACCGACCTTTGGCGgtcaaggcgaaggggag
gaggagggtccgTACTcagaacgggagggagggaggggggagggggcgga
ggaagaggaggatttgTTGGTGTGTGCGAGGGCTTCCGAACAAGCAGGGG
AGAAGGTccagGACTATATCGAGCAGCGCTATAATCACCCCAAGCTACCC
AAACCACCAGGCCTGCCGTCACAGCAGCAACCACCAACCCGGTTCCAGAG
TGGGGGGTCCGACAGCTGGTTGGATGGTAGCGGTCTAGCTAGCGAGGcga
acaacagcaacagcaataATGGCTTCAATGCGTCTTAG
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Synonyms
Publications