rna10153, rna10153 (mRNA) Nannochloropsis gaditana

Overview
Namerna10153
Unique Namerna10153
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length552
Alignment locationKK037264.1:6064..6704 +

Link to JBrowse

Properties
Property NameValue
Productoligopeptidase a
Orig transcript idgnl|cribi|Naga_100807g1.7978.mrna
Orig protein idgnl|cribi|Naga_100807g1.7978
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037264.1supercontigKK037264.1:6064..6704 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100807g1gene9856Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna10153rna10153-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM20550.1cds10122Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna10153 ID=rna10153|Name=rna10153|organism=Nannochloropsis gaditana|type=mRNA|length=552bp
TTTTAGATTGCTCACCCGCGCAGCCCTTCGGCTTCTTGTCCATCTCGCGG
TCTCGGAACCCTTTCGCGGCGCCTTTCCTCCCCTTAGACTCCATTTATGC
GCAACGCTTACCACCGTCGCGGTGTTTTAATTTTCCTTCTTGCCATTTAC
GCGTCGATCGACACTATGCTCCGTCACGGGCTTGGTAAAGTCCAAGGAGC
CCGTCCTCTTCAGGCAGGACGTGTACGGACCCTTTTTCTGGGAGCCAGCA
GCACGGGCCATGTCCAACGCCCCCACCCTCACCCGTACACCCACCGGACG
TCGTCGAAATCCATCGCCTGGACGCGGGCGGCGGCCGCGTTGGGAGGGAT
GAGCCTTTTAACCAGTGTCACGGGGACTGCGGGAGGAGGGTCTGGGGGCC
CCACGGCCCCGACCAAGGGGATGACGAGCATGGCCGCTGGAGAGGGAGGG
GTAGGGGGTGGAAATGCCTTATTGGAACAGGACGGCTTGCCCAAATTTGG
TAAAATCACGCCGGAAGCGGTGGTACCGGCCATCCGTCGGCTCTCGGAGG
TA
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protein sequence of rna10153

>rna10153-protein ID=rna10153-protein|Name=rna10153|organism=Nannochloropsis gaditana|type=polypeptide|length=73bp
MSADAFSAFEEVGLDNEEKVQEVGRRFRQTVLAMGGGTPPSEVYEAFRGR
QPKPDALLRHSGLAKEGECAATH
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mRNA from alignment at KK037264.1:6064..6704+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna10153 ID=rna10153|Name=rna10153|organism=Nannochloropsis gaditana|type=mRNA|length=641bp|location=Sequence derived from alignment at KK037264.1:6064..6704+ (Nannochloropsis gaditana)
ctccagctaCTACTCCTACAAATGGGCAGAAGTCATGTCAGCCgacgctt
tctccgcctttgAGGAGGTGGGCCTCGACAACGAAGAAAAAGTCCAGGAG
GTCGGCCGTCGCTTCCGTCAGGTACCCttacccttcctccttctccccct
cccttcttccctccttccctccctccctctcttcctcccagggcGAGACg
cgaagagagagaggcctTTACCTTCTCGtagtccctccctctctcttccc
tttttttttgtTCCCACGTCCCGGCATGAAGAACAACTAGGCCACAAGCT
CTTCTGATTGCGTCCTTgccgaccctcccttccttcctccctccctccct
ccctccttccttccccagaCGGTGCTCGCcatgggcggagggactcCTCC
TAGTGAAGTGTACGAAGCCTTTCGAGGCCGTCAGCCCAAGCCCGACGCGT
TGCTGCGCCACTCAGGACtggcaaaggaaggagaatgcGCGGCCACGCAT
TAGGTCTttcgggaggggaagagcgtgaggagggagggtgatgggcgtgg
aggataggagggagggatggtatcgaagggaggcggtgaaGCCGCCGTCG
TAGTACGCAAAAGAAACATGGAGCCAATCGGGGTCGATAAG
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Coding sequence (CDS) from alignment at KK037264.1:6064..6704+

>rna10153 ID=rna10153|Name=rna10153|organism=Nannochloropsis gaditana|type=CDS|length=444bp|location=Sequence derived from alignment at KK037264.1:6064..6704+ (Nannochloropsis gaditana)
ATGTCAGCCgacgctttctccgcctttgAGGAGGTGGGCCTCGACAACGA
AGAAAAAGTCCAGGAGGTCGGCCGTCGCTTCCGTCAGaCGGTGCTCGCca
tgggcggagggactcCTCCTAGTGAAGTGTACGAAGCCTTTCGAGGCCGT
CAGCCCAAGCCCGACGCGTTGCTGCGCCACTCAGGACtggcaaaggaagg
agaatgcGCGGCCACGCATTAGATGTCAGCCgacgctttctccgcctttg
AGGAGGTGGGCCTCGACAACGAAGAAAAAGTCCAGGAGGTCGGCCGTCGC
TTCCGTCAGaCGGTGCTCGCcatgggcggagggactcCTCCTAGTGAAGT
GTACGAAGCCTTTCGAGGCCGTCAGCCCAAGCCCGACGCGTTGCTGCGCC
ACTCAGGACtggcaaaggaaggagaatgcGCGGCCACGCATTAG
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Synonyms
Publications