rna10109, rna10109 (mRNA) Nannochloropsis gaditana

Overview
Namerna10109
Unique Namerna10109
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length321
Alignment locationKK037262.1:66666..67592 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100736g2.10603.mrna
Orig protein idgnl|cribi|Naga_100736g2.10603
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037262.1supercontigKK037262.1:66666..67592 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100736g2gene9812Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna10109rna10109-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM20596.1cds10078Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna10109 ID=rna10109|Name=rna10109|organism=Nannochloropsis gaditana|type=mRNA|length=321bp
CAAATTGTCCAACCCTTTGCCCGCCTTTGCAACCAACGGACAGGCGTGCA
TGCGTGCGTGAGACCCGGGGTCGGAAAGGGAGGGGTCATGGCTCCCGGAA
GGGCCGGCCGAGGGCCCTGGCTGGTGTTGGGATTGGTCTCCACCCTGGCC
GTCACAGCCATCGGCTACGTACACTACGACCAACAAAAGCAACGCACGGA
CATGCGTCGGCTGATTGTCGAGGAGAAAGAGAGGGAACGGGAGGAGCAGG
CGCGGGCGGGGAGCCAGAGGGCGAGGGCGGGGGCTCCGGGCGCCAAGGGC
GGGCCAGGGCGCTCTTTATGA
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protein sequence of rna10109

>rna10109-protein ID=rna10109-protein|Name=rna10109|organism=Nannochloropsis gaditana|type=polypeptide|length=111bp
MCTACLVSVHWRRLSCIFLAISCNVDQATEQGRRSLSERRKRIKLAKTKI
PEYPWVFRHKRRLSRVPAPSALSPKSTFYPAGPLREESKTTRQPPSQGVL
PGPVPLPLISL
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mRNA from alignment at KK037262.1:66666..67592+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna10109 ID=rna10109|Name=rna10109|organism=Nannochloropsis gaditana|type=mRNA|length=927bp|location=Sequence derived from alignment at KK037262.1:66666..67592+ (Nannochloropsis gaditana)
GAGATTATTAAATACACCCAAAAACATCTTTTTCCCCCAACTAAACCCAA
AAATTTCATGATAAAAGTTAAATTAGTAATTTAAAGTCACCTGACCTATT
TTTAATGTGCACAGCATGCTTAGTATCGGTGCATTGGCGCAGGTTGAGCT
GCATTTTCCTCGCCATCAGCTGCAATGTTGACCAAGCGACCGAGCAAGGC
AGGCGTTCTCTTTCTGAAAGGCGTAAGAGAATAAAATTGGCAAAAACAAA
AATACCAGAGTATCCATGGGTGTTTCGTCATAAGCGTCGTCTCTCCCGTG
TCCCGGCACCCAGTGCTCTCAGCCCAAAGAGCACTTTTTATCCTGCGGGT
CCCTTGAGGGAAGAATCAAAAACTACCCGCCAGCCTCCGAGCCAAGGCGT
TCTTCCTGGACCCGTGCCACTCCCCTTGATTTCACTCTGATGTTCTCATA
CCCCTACGGTGTCATTTTCGTGAGCTGATGCTCTCAAACCGTGACAGAGT
TCTCGTGATCGGGAGGCTTCTTCCAGAGGAGTGGCacactttttttcctc
ccgtccatTTCTATGTATCCAGGGAGTAGAGTGCATGGCGCTATCAAGAA
ATCAAGTCCTGCAgagccctccacctcgactgATGTGATCGTTGAGCCCA
TGTCTTTGATATGACGGCCTTTTCTGGAAGGCATTACATTGccaggccgg
ggaggaagctcgATGGCGTCAATTCATCAGGACGAGGGAGTCATTGCAAT
TGAGGAGCCTTGAACCTTGCCCTGCGACCAAGGCATGCGCGAAAGGCTTC
GCGTCGTATCCTCATCCTGCCAAGATGTGTCCCGCCCCGCAGCAACAGCC
CGTGGACAGCCCGAACGGATCGAACAGGCGGCCGTCACGAGTCCTCAGGA
TCGGAAAGCTCCTGGGCCCATCGCatc
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Coding sequence (CDS) from alignment at KK037262.1:66666..67592+

>rna10109 ID=rna10109|Name=rna10109|organism=Nannochloropsis gaditana|type=CDS|length=336bp|location=Sequence derived from alignment at KK037262.1:66666..67592+ (Nannochloropsis gaditana)
ATGTGCACAGCATGCTTAGTATCGGTGCATTGGCGCAGGTTGAGCTGCAT
TTTCCTCGCCATCAGCTGCAATGTTGACCAAGCGACCGAGCAAGGCAGGC
GTTCTCTTTCTGAAAGGCGTAAGAGAATAAAATTGGCAAAAACAAAAATA
CCAGAGTATCCATGGGTGTTTCGTCATAAGCGTCGTCTCTCCCGTGTCCC
GGCACCCAGTGCTCTCAGCCCAAAGAGCACTTTTTATCCTGCGGGTCCCT
TGAGGGAAGAATCAAAAACTACCCGCCAGCCTCCGAGCCAAGGCGTTCTT
CCTGGACCCGTGCCACTCCCCTTGATTTCACTCTGA
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Synonyms
Publications