EWM20633.1, cds10040 (CDS) Nannochloropsis gaditana

Overview
NameEWM20633.1
Unique Namecds10040
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037261.1:70117..70829 -
Alignment locationKK037261.1:69796..69958 -
Alignment locationKK037261.1:69188..69493 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM20633.1
Productmyotubularin-related family protein
Orig transcript idgnl|cribi|Naga_101280g1.8364.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037261.1supercontigKK037261.1:70117..70829 -
KK037261.1supercontigKK037261.1:69796..69958 -
KK037261.1supercontigKK037261.1:69188..69493 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR005113uDENN_dom
Homology
BLAST of EWM20633.1 vs. NCBI_GenBank
Match: gi|585100420|gb|EWM20633.1| (myotubularin-related family protein [Nannochloropsis gaditana])

HSP 1 Score: 764.992 bits (1974), Expect = 0.000e+0
Identity = 393/393 (100.00%), Postives = 393/393 (100.00%), Query Frame = 0
Query:    1 MQVSNHFHPLTGSSPSCSPSFSPSNSRPPKRSFLCVSSISWWSWAWTRRRCRGRTGGRAGQRGVKGQVVGRLRLRRFPNPSCLLPLQAMLTHVPSSSSASSSQPVFSFTSSFAASPSPQKSRSLTQLPSLPPSLASPSTGILPNDSQASLTSLSSPSSTTRSLAALPSFQPSSPCPSLPLTSPTSFPPSLPPSLAPDETHMACKVLDAYPTASHYAQGEGKEAVKVPDHVAQFVYPDGFSLRAEEAPPSFFSFVLTDMDGTRTYGCVLHLCEEVSTLPHPAKTQTALGRAFQEAGLPLPSWVQSGNFFVPKALVILSHYPFFNTFREVGPQASRRDLSFLFLIPAFIPPSALPSIPFSLRSSLSSTASPSPLLPSPSSATSPIFSAKCPCPPR 393
            MQVSNHFHPLTGSSPSCSPSFSPSNSRPPKRSFLCVSSISWWSWAWTRRRCRGRTGGRAGQRGVKGQVVGRLRLRRFPNPSCLLPLQAMLTHVPSSSSASSSQPVFSFTSSFAASPSPQKSRSLTQLPSLPPSLASPSTGILPNDSQASLTSLSSPSSTTRSLAALPSFQPSSPCPSLPLTSPTSFPPSLPPSLAPDETHMACKVLDAYPTASHYAQGEGKEAVKVPDHVAQFVYPDGFSLRAEEAPPSFFSFVLTDMDGTRTYGCVLHLCEEVSTLPHPAKTQTALGRAFQEAGLPLPSWVQSGNFFVPKALVILSHYPFFNTFREVGPQASRRDLSFLFLIPAFIPPSALPSIPFSLRSSLSSTASPSPLLPSPSSATSPIFSAKCPCPPR
Sbjct:    1 MQVSNHFHPLTGSSPSCSPSFSPSNSRPPKRSFLCVSSISWWSWAWTRRRCRGRTGGRAGQRGVKGQVVGRLRLRRFPNPSCLLPLQAMLTHVPSSSSASSSQPVFSFTSSFAASPSPQKSRSLTQLPSLPPSLASPSTGILPNDSQASLTSLSSPSSTTRSLAALPSFQPSSPCPSLPLTSPTSFPPSLPPSLAPDETHMACKVLDAYPTASHYAQGEGKEAVKVPDHVAQFVYPDGFSLRAEEAPPSFFSFVLTDMDGTRTYGCVLHLCEEVSTLPHPAKTQTALGRAFQEAGLPLPSWVQSGNFFVPKALVILSHYPFFNTFREVGPQASRRDLSFLFLIPAFIPPSALPSIPFSLRSSLSSTASPSPLLPSPSSATSPIFSAKCPCPPR 393          
BLAST of EWM20633.1 vs. NCBI_GenBank
Match: gi|553194020|ref|XP_005855876.1| (denn domain-containing protein 4b, partial [Nannochloropsis gaditana CCMP526] >gi|422293185|gb|EKU20485.1| denn domain-containing protein 4b, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 122.094 bits (305), Expect = 1.132e-29
Identity = 61/81 (75.31%), Postives = 63/81 (77.78%), Query Frame = 0
Query:  258 MDGTRTYGCVLHLCEEVSTLPHPAKTQTALGRAFQEAGLPLPSWVQSGNFFVPKALVILSHYPFFNTFREVGPQASRRDLS 338
            MDGTRTYGCVLHLCEEVSTLPHPAKTQ ALGRAF           QSGNFFVPKALVILSHYPFFNTFREV  +  R  +S
Sbjct:    1 MDGTRTYGCVLHLCEEVSTLPHPAKTQAALGRAF-----------QSGNFFVPKALVILSHYPFFNTFREVLLELYRISIS 70          
BLAST of EWM20633.1 vs. NCBI_GenBank
Match: gi|299117591|emb|CBN75433.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 95.5153 bits (236), Expect = 1.712e-17
Identity = 79/261 (30.27%), Postives = 121/261 (46.36%), Query Frame = 0
Query:  151 TSLSSPSSTTRSLAALPSFQPSSPCPSLPLTSPTSF--PPSLPPSLAPDETHMACKVLDAYPTA-SHYAQGEGKEAVKVPDHVAQFVYPDGFSLRAEEAPPSFFSFVLTDMDGTRTYGCVLHLCEE---------VSTLPHPAKTQTALGRAFQEAGLPLPSWVQSGNFFVPKALVILSHYPFFNTFREVGPQASRRDLS------------FLFLIPAFIPPSALPSIPFSL-RSSLSSTASPSPLLPSPSSATSPIFSA 386
            T   SP+S +++L       P        +  P  F     + P  AP++  +  +VLD +P A SH+          +P+H+ QFV+PDG  L ++E PP+ F F+LT+  G + +G VLH+ EE         VS +  P +T     RA   AG   P        + PKALV+LSHYPF+N F +   Q  R  LS            F+  +P  +PP     + ++L   +L+ T  P   LP    +  P+F++
Sbjct:  121 TGYQSPASLSQTL-------PIRLVDYFVVVGPGGFMLDDRINPESAPEDVEIREEVLDCFPEADSHHG-------YPMPEHLPQFVFPDGMRLHSQEKPPTTFPFILTNSCGLKMHGVVLHVTEEIDSHNVGGMVSQMATPERT-GGDERARARAGHEYP------QLYAPKALVLLSHYPFYNLFTQFLQQIYRIGLSEAPLPIERYISNFVCEVP--LPPQGQVEVNYALPDRTLTITRPPRNRLPLVDFSYRPLFAS 358          
BLAST of EWM20633.1 vs. NCBI_GenBank
Match: gi|1173942286|gb|OQR91311.1| (hypothetical protein THRCLA_09040 [Thraustotheca clavata])

HSP 1 Score: 85.1149 bits (209), Expect = 4.344e-14
Identity = 55/165 (33.33%), Postives = 82/165 (49.70%), Query Frame = 0
Query:  193 SLAPDETHMACKVLDAYPTASHYAQGEGKEAVKVPDHVAQFVYPDGFSLRAEEAPPSFFSFVLTDMDGTRTYGCVLHLCEEVSTLP---------HPAKTQTALGRAFQEAGLPLPSWVQ-----SGN-----FFVPKALVILSHYPFFNTFREVGPQASRRDLS 338
            SL PD+      +LD++P     A         +P H++QF +P+GFSL +    P+FFSFVLT++ G + Y C L   EE++ L          + +KT T            +P+W Q     +GN      F PK L+++SH+PFF++FR    Q  R  LS
Sbjct:  172 SLGPDDVQFVPTILDSFPDPHSDA--------PLPSHISQFAFPEGFSLSSTHQSPTFFSFVLTNVSGAKLYACALKFYEELTPLEVISLFAVPQNDSKTTT------------IPTWAQELSSGTGNGTATSVFCPKCLIVISHHPFFSSFRHFLQQIYRISLS 316          
BLAST of EWM20633.1 vs. NCBI_GenBank
Match: gi|695374637|ref|XP_009515344.1| (hypothetical protein PHYSODRAFT_468694 [Phytophthora sojae] >gi|348688255|gb|EGZ28069.1| hypothetical protein PHYSODRAFT_468694 [Phytophthora sojae])

HSP 1 Score: 73.9442 bits (180), Expect = 1.549e-10
Identity = 52/179 (29.05%), Postives = 74/179 (41.34%), Query Frame = 0
Query:  189 SLPPSLAPDETHMACKVLDAYPTASHYAQGEGKEAVKVPDHVAQFVYPDGFSLRAEEAPPSFFSFVLTDMDGTRTYGCVLHLCEEVSTLPHPAKTQTALG--------------------RAFQEAGLPLPSWVQS---------GNFFVPKALVILSHYPFFNTFREVGPQASRRDLS 338
            ++  + +P E      VLD +P    YA         +P H+ +F +P+GF L      P FFSFVLT++ G + Y C L   EE+    HP +  + +                              LP WVQ          G  F PK +V+ SHYP+F+ FR+   Q  R  LS
Sbjct:  236 NIEKTKSPTEIRFLPAVLDMFPEM--YADSP------LPAHIGEFAFPEGFVLSKSYVAPVFFSFVLTNVSGVKIYACALRFYEEL----HPLEVVSLIAPHYHRQRHRRRPSNGPHQPDENDDNQRTQLPQWVQDLSGDVSSAPGPVFCPKCIVVTSHYPYFSAFRQFLQQIYRVTLS 402          
BLAST of EWM20633.1 vs. NCBI_GenBank
Match: gi|301117184|ref|XP_002906320.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262107669|gb|EEY65721.1| conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 73.9442 bits (180), Expect = 1.602e-10
Identity = 47/144 (32.64%), Postives = 61/144 (42.36%), Query Frame = 0
Query:  226 VPDHVAQFVYPDGFSLRAEEAPPSFFSFVLTDMDGTRTYGCVLHLCEEV----------------------STLPHPAKTQTALGRAFQEAGLPLPSWVQS---------GNFFVPKALVILSHYPFFNTFREVGPQASRRDLS 338
            +P H+A F +P+GF L      P FFSFVLT+M G + Y C L   EE+                      S +PH    +    R        LP WVQ          G  F PK +V+ S YP+F+ FR+   Q  R  LS
Sbjct:  250 LPAHLADFAFPEGFVLSKSYVAPVFFSFVLTNMSGVKIYACALKFYEELHPLEVVSLIAPHYHRQRHRRRPSNVPHQLDEKDDNQRT------QLPQWVQDLSGDAASAPGPVFCPKGIVVTSLYPYFSAFRQFLQQIYRVTLS 387          
BLAST of EWM20633.1 vs. NCBI_GenBank
Match: gi|813226889|ref|XP_012212521.1| (hypothetical protein SPRG_17723 [Saprolegnia parasitica CBS 223.65] >gi|641520801|gb|KDO16772.1| hypothetical protein SPRG_17723 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 73.559 bits (179), Expect = 1.905e-10
Identity = 48/166 (28.92%), Postives = 77/166 (46.39%), Query Frame = 0
Query:  190 LPPSLAPDETHMACKVLDAYPTASHYAQGEGKEAVKVPDHVAQFVYPDGFSLRAEEAPPSFFSFVLTDMDGTRTYGCVLHLCEEVSTL---------PHPAKTQTALGRAFQEAGLPLPSWVQ--------SGNFFVPKALVILSHYPFFNTFREVGPQASRRDLS 338
            L  +  P +      +LD++P A   A         +P H++QF +P+G +L      P+FF+FVLT++ G + Y C L   EE+S L         P   KT+  +          +P W Q        + + + PK L+++SH+PFF+ +R    Q  R  LS
Sbjct:  176 LGENAGPSDVQFVPTILDSFPDAHADA--------PLPSHISQFAFPEGLALSQTHITPTFFTFVLTNVSGAKLYACALKFVEELSPLEVLTLFAPPPGNEKTKAPI----------IPKWAQDLSAGSASTTSVYSPKCLLLISHHPFFSGYRLFLQQIYRLSLS 323          
BLAST of EWM20633.1 vs. NCBI_GenBank
Match: gi|673037554|ref|XP_008872738.1| (hypothetical protein H310_08666 [Aphanomyces invadans] >gi|574471534|gb|ETV98541.1| hypothetical protein H310_08666 [Aphanomyces invadans])

HSP 1 Score: 72.4034 bits (176), Expect = 5.573e-10
Identity = 42/118 (35.59%), Postives = 60/118 (50.85%), Query Frame = 0
Query:  229 HVAQFVYPDGFSLRAEEAPPSFFSFVLTDMDGTRTYGCVLHLCEEVSTLPHPAKTQTALGRAFQEAGLPLPSWV--------QSGNFFVPKALVILSHYPFFNTFREVGPQASRRDLS 338
            H+AQF +P+G +L A    P+FFSFVLT++ G + Y C L   E    L  P +      +        +P+W         Q+ + + PK LV+LS YPF++TFR    Q  R  LS
Sbjct:  203 HIAQFAFPEGLTLSAAFREPTFFSFVLTNVSGAKLYACALQFDE----LLTPFEVMALFVKDV------MPTWAQALSSGAKQASSVYSPKCLVVLSQYPFYSTFRMFLQQIYRLSLS 310          
BLAST of EWM20633.1 vs. NCBI_GenBank
Match: gi|813180563|ref|XP_012206090.1| (hypothetical protein SPRG_09946 [Saprolegnia parasitica CBS 223.65] >gi|641528940|gb|KDO23138.1| hypothetical protein SPRG_09946 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 72.0182 bits (175), Expect = 7.127e-10
Identity = 48/166 (28.92%), Postives = 77/166 (46.39%), Query Frame = 0
Query:  190 LPPSLAPDETHMACKVLDAYPTASHYAQGEGKEAVKVPDHVAQFVYPDGFSLRAEEAPPSFFSFVLTDMDGTRTYGCVLHLCEEVSTL---------PHPAKTQTALGRAFQEAGLPLPSWVQ--------SGNFFVPKALVILSHYPFFNTFREVGPQASRRDLS 338
            L  +  P +      +LD++P A   A         +P H++QF +P+G +L      P+FF+FVLT++ G + Y C L   EE+S L         P   KT+  +          +P W Q        + + + PK L+++SH+PFF+ +R    Q  R  LS
Sbjct:  176 LGENAGPSDVQFVPTILDSFPDAHADA--------PLPSHISQFAFPEGLALSQTHITPTFFTFVLTNVSGAKLYACALKFVEELSPLEVLTLFAPPPGSEKTKAPI----------IPKWAQDLSAGSASTTSVYSPKCLLLISHHPFFSGYRLFLQQIYRLSLS 323          
BLAST of EWM20633.1 vs. NCBI_GenBank
Match: gi|673037556|ref|XP_008872739.1| (hypothetical protein, variant [Aphanomyces invadans] >gi|574471535|gb|ETV98542.1| hypothetical protein, variant [Aphanomyces invadans])

HSP 1 Score: 72.0182 bits (175), Expect = 7.308e-10
Identity = 42/118 (35.59%), Postives = 60/118 (50.85%), Query Frame = 0
Query:  229 HVAQFVYPDGFSLRAEEAPPSFFSFVLTDMDGTRTYGCVLHLCEEVSTLPHPAKTQTALGRAFQEAGLPLPSWV--------QSGNFFVPKALVILSHYPFFNTFREVGPQASRRDLS 338
            H+AQF +P+G +L A    P+FFSFVLT++ G + Y C L   E    L  P +      +        +P+W         Q+ + + PK LV+LS YPF++TFR    Q  R  LS
Sbjct:  203 HIAQFAFPEGLTLSAAFREPTFFSFVLTNVSGAKLYACALQFDE----LLTPFEVMALFVKDV------MPTWAQALSSGAKQASSVYSPKCLVVLSQYPFYSTFRMFLQQIYRLSLS 310          
The following BLAST results are available for this feature:
BLAST of EWM20633.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585100420|gb|EWM20633.1|0.000e+0100.00myotubularin-related family protein [Nannochlorops... [more]
gi|553194020|ref|XP_005855876.1|1.132e-2975.31denn domain-containing protein 4b, partial [Nannoc... [more]
gi|299117591|emb|CBN75433.1|1.712e-1730.27conserved unknown protein [Ectocarpus siliculosus][more]
gi|1173942286|gb|OQR91311.1|4.344e-1433.33hypothetical protein THRCLA_09040 [Thraustotheca c... [more]
gi|695374637|ref|XP_009515344.1|1.549e-1029.05hypothetical protein PHYSODRAFT_468694 [Phytophtho... [more]
gi|301117184|ref|XP_002906320.1|1.602e-1032.64conserved hypothetical protein [Phytophthora infes... [more]
gi|813226889|ref|XP_012212521.1|1.905e-1028.92hypothetical protein SPRG_17723 [Saprolegnia paras... [more]
gi|673037554|ref|XP_008872738.1|5.573e-1035.59hypothetical protein H310_08666 [Aphanomyces invad... [more]
gi|813180563|ref|XP_012206090.1|7.127e-1028.92hypothetical protein SPRG_09946 [Saprolegnia paras... [more]
gi|673037556|ref|XP_008872739.1|7.308e-1035.59hypothetical protein, variant [Aphanomyces invadan... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna10071rna10071Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications