EWM20641.1, cds10028 (CDS) Nannochloropsis gaditana

Overview
NameEWM20641.1
Unique Namecds10028
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037261.1:24636..24647 +
Alignment locationKK037261.1:24829..24833 +
Alignment locationKK037261.1:25299..25388 +
Alignment locationKK037261.1:25558..25658 +
Alignment locationKK037261.1:25871..25917 +
Alignment locationKK037261.1:26170..26355 +
Alignment locationKK037261.1:26512..26581 +
Alignment locationKK037261.1:26704..26881 +
Alignment locationKK037261.1:27014..27170 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM20641.1
ProductBestrophin/UPF0187
Orig transcript idgnl|cribi|Naga_100228g1.4658.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037261.1supercontigKK037261.1:24636..24647 +
KK037261.1supercontigKK037261.1:24829..24833 +
KK037261.1supercontigKK037261.1:25299..25388 +
KK037261.1supercontigKK037261.1:25558..25658 +
KK037261.1supercontigKK037261.1:25871..25917 +
KK037261.1supercontigKK037261.1:26170..26355 +
KK037261.1supercontigKK037261.1:26512..26581 +
KK037261.1supercontigKK037261.1:26704..26881 +
KK037261.1supercontigKK037261.1:27014..27170 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR021134Bestrophin/UPF0187
Homology
BLAST of EWM20641.1 vs. NCBI_GenBank
Match: gi|585100439|gb|EWM20641.1| (Bestrophin/UPF0187 [Nannochloropsis gaditana])

HSP 1 Score: 587.03 bits (1512), Expect = 0.000e+0
Identity = 281/281 (100.00%), Postives = 281/281 (100.00%), Query Frame = 0
Query:    1 MKKLTKFNKDTFVLDPTRPRLVDLLTEEEVQQFRRMPVNSRPVYLITEMNLLAYRILGLSKETSIRINIDNKFQEVLAGWNGMLRVENLRIPFPYTHVVNLLTFIFVFGAPFIYTSRTQNWAENDVLLFASLLLGVAFYGLEDMARKCQHPLGWDLEDHDLEIFGVRLNLDGQEMAKICGVQEPMEFMPYSELFDDLPDFFQVMSYKSYLQTTSVSMEGKIPLIPRRPGKKGSRCIFRRSTVNSTRFDLCKWLSKHCRIVPKESDVHCMERNAKCTLVWAQ 281
            MKKLTKFNKDTFVLDPTRPRLVDLLTEEEVQQFRRMPVNSRPVYLITEMNLLAYRILGLSKETSIRINIDNKFQEVLAGWNGMLRVENLRIPFPYTHVVNLLTFIFVFGAPFIYTSRTQNWAENDVLLFASLLLGVAFYGLEDMARKCQHPLGWDLEDHDLEIFGVRLNLDGQEMAKICGVQEPMEFMPYSELFDDLPDFFQVMSYKSYLQTTSVSMEGKIPLIPRRPGKKGSRCIFRRSTVNSTRFDLCKWLSKHCRIVPKESDVHCMERNAKCTLVWAQ
Sbjct:    1 MKKLTKFNKDTFVLDPTRPRLVDLLTEEEVQQFRRMPVNSRPVYLITEMNLLAYRILGLSKETSIRINIDNKFQEVLAGWNGMLRVENLRIPFPYTHVVNLLTFIFVFGAPFIYTSRTQNWAENDVLLFASLLLGVAFYGLEDMARKCQHPLGWDLEDHDLEIFGVRLNLDGQEMAKICGVQEPMEFMPYSELFDDLPDFFQVMSYKSYLQTTSVSMEGKIPLIPRRPGKKGSRCIFRRSTVNSTRFDLCKWLSKHCRIVPKESDVHCMERNAKCTLVWAQ 281          
BLAST of EWM20641.1 vs. NCBI_GenBank
Match: gi|676380227|ref|XP_009033392.1| (hypothetical protein AURANDRAFT_61213 [Aureococcus anophagefferens] >gi|323456480|gb|EGB12347.1| hypothetical protein AURANDRAFT_61213 [Aureococcus anophagefferens])

HSP 1 Score: 80.1073 bits (196), Expect = 1.984e-13
Identity = 54/181 (29.83%), Postives = 95/181 (52.49%), Query Frame = 0
Query:    7 FNKDTFVLDPTRPRLVDLLTEEEVQQFRRMPVNSRPVYLITE--MNLLAYRILGLSKETSIRINIDNKFQEVLAGWNGMLRVENLRIPFPYTHVVNLLTFIFVFG--APFIYTSRTQ---NWAENDVLLFASLLLGVAFYGLEDMARKCQHPLGWDLEDHDLEIFGVRLNLDGQEMAKICG 180
            +NK T++LDP+RPRLVD+LT  EV  +  +   +R V L +   M+ L      L+++ +         QE+L  +    R+ +  +PF YT ++ +L FIFV+    P  Y +RT+   +W     +L  S++    +YG+  +A + ++P  +   DHDL+ F  +L+ +   +AK   
Sbjct:  178 YNKRTWILDPSRPRLVDMLTPREVATYGTVSSGAR-VMLASHSLMDALQRLAPSLAQDRAFTECSTRNIQELLDAFKSCQRIVDTPLPFTYTLILGVLLFIFVYSVPVPVAYWARTEKRLHWYSMSGIL-PSIVTAFFYYGVMQIAIEIENPFNFADVDHDLDGFADKLHSETLAIAKTVA 356          
BLAST of EWM20641.1 vs. NCBI_GenBank
Match: gi|303278418|ref|XP_003058502.1| (membrane protein [Micromonas pusilla CCMP1545] >gi|226459662|gb|EEH56957.1| membrane protein [Micromonas pusilla CCMP1545])

HSP 1 Score: 79.337 bits (194), Expect = 6.332e-13
Identity = 49/153 (32.03%), Postives = 82/153 (53.59%), Query Frame = 0
Query:   18 RPRLVDLLTEEEVQQFRRMPVNSRPVYLITEMNLLA--YRILGLSKETSIRINIDNKFQEVLAGWNGMLRVENLRIPFPYTHVVNLLTFIFVFGAPFIYTSRTQNWAENDVLLFASLLLGVAFYGLEDMARKCQHPLGWDLEDHDLEIFGVRL 168
            RP L  LLT+ E  +F+ +  N+R   ++ +M  +   +R LG   +     +I +  +  L  +  M R+ + ++PF Y H+VN L FIFVF APF++T+  + W    +    S ++ ++FYG+ ++AR  + P  W    HDL   G RL
Sbjct: 1201 RPSLGVLLTDAERAEFKALDFNNRANMVVWKMQSIVEHHRRLGHVSDRGA-FDIYHDLEGCLEAYKHMERIVSTKMPFQYLHMVNFLLFIFVFSAPFVFTTGFK-W----LSPIPSCIVAISFYGVAEVARSIEDPYSWVKPCHDLTGVGWRL 1347          

HSP 2 Score: 73.9442 bits (180), Expect = 3.759e-11
Identity = 49/164 (29.88%), Postives = 81/164 (49.39%), Query Frame = 0
Query:    8 NKDTFVLDPT-RPRLVDLLTEEEVQQFRRMPVNSRP--VYLITEMNLLAYRILGLSKETSIRINIDNKFQEVLAGWNGMLRVENLRIPFPYTHVVNLLTFIFVFGAPFIYTSRTQNWAENDVLLFASLLLGVAFYGLEDMARKCQHPLGWDLEDHDLEIFGVRL 168
            +++  + DPT +P L DLL   E +    M  ++R   V +  +M +  +R LG   E +    I  + +  L  +  M R+ +  IPF Y H++  + F FVF APF++ + T  W    +    S ++ V FYG+ +M +  Q P  W    HDL   G+R+
Sbjct:  741 DEECVMSDPTGKPPLPDLLKPGEAKTLLAMMPSNRCNWVAMRVQMIVETHRRLGNISERAA-FEIYQQLELCLGAYKAMERIVSTPIPFTYLHMLQFILFFFVFSAPFVFAT-TFRW----IAWLPSAIVAVGFYGINEMGKLIQDPFNWQQPCHDLSGVGLRI 898          

HSP 3 Score: 70.8626 bits (172), Expect = 5.167e-10
Identity = 44/153 (28.76%), Postives = 73/153 (47.71%), Query Frame = 0
Query:   19 PRLVDLLT-EEEVQQFRRMPVNSRPVYLITEMNLLA--YRILGLSKETSIRINIDNKFQEVLAGWNGMLRVENLRIPFPYTHVVNLLTFIFVFGAPFIYTSRTQNWAENDVLLFASLLLGVAFYGLEDMARKCQHPLGWDLEDHDLEIFGVRL 168
            P L  LL    E  ++   P  +RP  ++T +  +   +R LG   E     ++ ++ Q V++      RV    IPF Y  + + +TF+F + APFI+T   Q      +  F S LL +AFYG+  +    + P  W   +HD+   G+R+
Sbjct: 1680 PSLGSLLKGASEANEYSEAPFQNRPNMVVTRIQAIVEHHRRLGHICERGA-FDLYSECQLVMSSLKACERVVTTPIPFQYVQICSFVTFLFTYSAPFIFTVSYQY-----ISFFPSCLLAMAFYGINSIGEVIERPFNWTEPNHDIAGVGLRV 1826          
BLAST of EWM20641.1 vs. NCBI_GenBank
Match: gi|255076247|ref|XP_002501798.1| (membrane protein [Micromonas commoda] >gi|226517062|gb|ACO63056.1| membrane protein [Micromonas commoda])

HSP 1 Score: 78.9518 bits (193), Expect = 8.059e-13
Identity = 51/153 (33.33%), Postives = 82/153 (53.59%), Query Frame = 0
Query:   18 RPRLVDLLTEEEVQQFRRMPVNSRPVYLITEMNLLA--YRILGLSKETSIRINIDNKFQEVLAGWNGMLRVENLRIPFPYTHVVNLLTFIFVFGAPFIYTSRTQNWAENDVLLFASLLLGVAFYGLEDMARKCQHPLGWDLEDHDLEIFGVRL 168
            RP L  LLT+EE ++F  +  N+R   ++  M  +   +R LG   E     +I +  +  L  +  M R+ + ++PF Y H+VN L FIFVF APF++T+  + W    +    S ++ ++FYG+ ++AR  + P  W    HDL   G RL
Sbjct: 1216 RPGLGVLLTDEEKEEFLAIDPNNRANMVVWRMQSIVEHHRRLGHVCERGA-FDIYHDLEGCLEAFKHMERIVSTKMPFQYLHMVNFLLFIFVFSAPFVFTTGFK-W----LSPIPSCIVAISFYGVAEVARSIEDPYSWTKPCHDLTGTGWRL 1362          

HSP 2 Score: 76.6406 bits (187), Expect = 4.685e-12
Identity = 51/176 (28.98%), Postives = 91/176 (51.70%), Query Frame = 0
Query:    8 NKDTFVLDPT-RPRLVDLLTEEEVQQFRRMPVNSRPVYLITEMNLLA--YRILGLSKETSIRINIDNKFQEVLAGWNGMLRVENLRIPFPYTHVVNLLTFIFVFGAPFIYTSRTQNWAENDVLLFASLLLGVAFYGLEDMARKCQHPLGWDLEDHDLEIFGVRL---NLDGQEMAK 177
            ++D   +D T +P L DLL E E ++   +  ++R  ++   + ++   +R LG   E +    I  + +  L+ +  M R+ +  IPF Y H++  + F FVF APF++T+ T +W    +    S+++ + FYG+ +M +  Q P  W    HDL   G+R+   NL   E A+
Sbjct:  790 DEDCVKVDATGKPPLPDLLREGESERLLALMPSNRCNWIAMRIQIITETHRRLGNISERAA-FEIYQQLEICLSAYKAMERIVSTPIPFTYLHMLQFILFFFVFSAPFVFTT-TFHW----IGYVPSVIVAIGFYGINEMGKLIQDPFNWQQPCHDLSGLGLRIYRENLKIHEHAE 959          

HSP 3 Score: 69.3218 bits (168), Expect = 1.493e-9
Identity = 44/158 (27.85%), Postives = 77/158 (48.73%), Query Frame = 0
Query:   28 EEVQQFRRMPVNSRPVYLITEMNLLA--YRILGLSKETSIRINIDNKFQEVLAGWNGMLRVENLRIPFPYTHVVNLLTFIFVFGAPFIYTSRTQNWAENDVLLFASLLLGVAFYGLEDMARKCQHPLGWDLEDHDLEIFGVRLNLDGQEMAKICGVQE 183
            +EV +F  +P  +R   ++T +  +   +R LG   E +   ++  + + VLA      RV    IPF Y  + N +TF F + APFI+T   Q      +  F + LL +AFYG+  +    + P  W   +HDL   G+R+  +  ++ + C  ++
Sbjct: 1669 QEVAEFSSIPFQNRANTVVTRIQSIVEHHRRLGHVCERAA-FDLYRECELVLASLKSCERVVTTPIPFQYLQMSNFVTFFFTYSAPFIFTVSYQY-----ISFFPACLLAMAFYGINSVGEVIERPFNWREPNHDLTGVGLRVWRECVQIHRRCASRD 1820          

HSP 4 Score: 65.855 bits (159), Expect = 2.097e-8
Identity = 41/154 (26.62%), Postives = 83/154 (53.90%), Query Frame = 0
Query:   18 RPRLVDLLTEE-EVQQFRRMPVNSRPVYLITEMNLL--AYRILGLSKETSIRINIDNKFQEVLAGWNGMLRVENLRIPFPYTHVVNLLTFIFVFGAPFIYTSRTQNWAENDVLLFASLLLGVAFYGLEDMARKCQHPLGWDLEDHDLEIFGVRL 168
            +PR+ D++ ++ E+ +F+ +   +RP   ++++  +   +R +G   E +  +++    Q VL       R+    IP+ Y H++N+L F FV+  PF++T+  + W    +  F S ++ +AFYG+ ++ R  + P  W+   HDL   G R+
Sbjct:  297 KPRVPDIVKDKIELDEFKTLEPWNRPNVCVSKITAIIEHHRRVGNLGERAA-LDVFRDCQLVLDALKSAERIVTTPIPYQYLHMLNILLFFFVYSVPFVFTANFK-W----ITPFPSCVVALAFYGVNEIGRCMEDPYSWEDPCHDLSGVGWRI 444          

HSP 5 Score: 62.7734 bits (151), Expect = 2.192e-7
Identity = 43/161 (26.71%), Postives = 75/161 (46.58%), Query Frame = 0
Query:   19 PRLVDLLTEEEVQQFRRMPVNSRPVYLITEMNLLAYRILGLSKETSI----RINIDNKFQEVLAGWNGMLRVENLRIPFPYTHVVNLLTFIFVFGAPFIYTSRTQNWAENDVLLFASLLLGVAFYGLEDMARKCQHPLGWDLEDHDLEIFGVRLNLDGQEM 175
            P L  LLT EE +++  +PV +R    + E+  +  R     +E  +      ++  +   VLA +    R+    IP+ Y H+VNL+ F FVF AP ++T   +      +    S +L + FYG+ ++ R    P  W     +L   G R++ + Q +
Sbjct: 2104 PSLATLLTPEERRRYADVPVGNRFNVCVAEIQRIVARN---QREGDLYEKAAYDVYKECDRVLAAFKTCERIVTTPIPYQYVHMVNLVLFFFVFSAPLVFTVTFKR-----LTPLPSGILALGFYGIWEVGRSMMDPFDWMEPCVNLTAIGRRISTEAQRI 2256          
BLAST of EWM20641.1 vs. NCBI_GenBank
Match: gi|612392039|ref|XP_007511540.1| (membrane protein [Bathycoccus prasinos] >gi|412988325|emb|CCO17661.1| membrane protein [Bathycoccus prasinos])

HSP 1 Score: 69.707 bits (169), Expect = 1.139e-9
Identity = 48/154 (31.17%), Postives = 78/154 (50.65%), Query Frame = 0
Query:   18 RPRLVDLLTEE-EVQQFRRM-PVNSRPVYLITEMNLL-AYRILGLSKETSIRINIDNKFQEVLAGWNGMLRVENLRIPFPYTHVVNLLTFIFVFGAPFIYTSRTQNWAENDVLLFASLLLGVAFYGLEDMARKCQHPLGWDLEDHDLEIFGVRL 168
            +P L+DLL +  E++ F  + P N     +   ++++   R LG   E    ++I      +LAG     R+     P  Y H++  L F FV+ APF +T+ T +W    +    S LL +AFYG+ ++A+K ++P GW+   HDL   G  L
Sbjct:  252 KPSLLDLLQDPVEIEAFVHLEPFNRANAVVQKILDIVEKRRRLGQVCERGA-LDIYRDCSGILAGVKTCERITTTPTPNKYAHMLTTLLFFFVYSAPFCFTA-TFDW----LTPMPSALLAMAFYGVAEVAKKMENPFGWEAPSHDLSQLGAEL 399          

HSP 2 Score: 67.0106 bits (162), Expect = 8.116e-9
Identity = 42/150 (28.00%), Postives = 75/150 (50.00%), Query Frame = 0
Query:   19 PRLVDLLTEEEVQQFRRMPVNSRPVYLITEMNLL---AYRILGLSKETSIRINIDNKFQEVLAGWNGMLRVENLRIPFPYTHVVNLLTFIFVFGAPFIYTSRTQNWAENDVLLFASLLLGVAFYGLEDMARKCQHPLGWDLEDHDLEIFG 165
            P L  +LTE E         +SRP  ++ +   L   A +   +S+  +  +  D    + L   N + R+   ++P+ Y H++N   F FV+ APFI+T+    W    +    ++L+ +AFYG  ++AR  ++P  +D + HD+E  G
Sbjct: 1168 PSLAVILTESEKDFMCGKLPSSRPALVVAKCQKLVEEARKRNDISERGAFDLYDD--LNDCLVACNNLERISETKMPWIYLHLLNFALFAFVYSAPFIFTAGF-GW----LSPAPAMLIAIAFYGTAEVARNMENPFDYDTDGHDIEAAG 1310          
BLAST of EWM20641.1 vs. NCBI_GenBank
Match: gi|145349813|ref|XP_001419322.1| (predicted protein [Ostreococcus lucimarinus CCE9901] >gi|144579553|gb|ABO97615.1| predicted protein [Ostreococcus lucimarinus CCE9901])

HSP 1 Score: 63.1586 bits (152), Expect = 1.573e-7
Identity = 39/151 (25.83%), Postives = 73/151 (48.34%), Query Frame = 0
Query:   20 RLVDLLTEEEVQQFRRMPVNSRPVYLITEMNLLAYRILGLSKETSIRINID--NKFQEVLAGWNGMLRVENLRIPFPYTHVVNLLTFIFVFGAPFIYTSRTQNWAENDVLLFASLLLGVAFYGLEDMARKCQHPLGWDLEDHDLEIFGVRL 168
            +L DL+ E E  + + +PV++ P ++   +N + +   G S   + R + +   K    L    G++RV +  +P  + H++ +L F +VF  PF+ +   Q W    +     +L+ +AFYG+ + +     P  W    HDL   G R+
Sbjct:  521 KLCDLVRESEHPELKSLPVHAFPTWVGMRLNAI-FEEYGRSGAMTERFSAEAYRKVCNSLQAMQGLMRVVSTPVPNRFRHLLQVLLFFYVFTMPFVLSVSYQ-W----ITSVPVILVALAFYGIAETSTSMMEPFSWTGPRHDLSGMGSRM 665          
The following BLAST results are available for this feature:
BLAST of EWM20641.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 6
Match NameE-valueIdentityDescription
gi|585100439|gb|EWM20641.1|0.000e+0100.00Bestrophin/UPF0187 [Nannochloropsis gaditana][more]
gi|676380227|ref|XP_009033392.1|1.984e-1329.83hypothetical protein AURANDRAFT_61213 [Aureococcus... [more]
gi|303278418|ref|XP_003058502.1|6.332e-1332.03membrane protein [Micromonas pusilla CCMP1545] >gi... [more]
gi|255076247|ref|XP_002501798.1|8.059e-1333.33membrane protein [Micromonas commoda] >gi|22651706... [more]
gi|612392039|ref|XP_007511540.1|1.139e-931.17membrane protein [Bathycoccus prasinos] >gi|412988... [more]
gi|145349813|ref|XP_001419322.1|1.573e-725.83predicted protein [Ostreococcus lucimarinus CCE990... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna10059rna10059Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications