EWM20641.1, cds10028 (CDS) Nannochloropsis gaditana
|
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM20641.1 vs. NCBI_GenBank
Match: gi|585100439|gb|EWM20641.1| (Bestrophin/UPF0187 [Nannochloropsis gaditana]) HSP 1 Score: 587.03 bits (1512), Expect = 0.000e+0 Identity = 281/281 (100.00%), Postives = 281/281 (100.00%), Query Frame = 0
Query: 1 MKKLTKFNKDTFVLDPTRPRLVDLLTEEEVQQFRRMPVNSRPVYLITEMNLLAYRILGLSKETSIRINIDNKFQEVLAGWNGMLRVENLRIPFPYTHVVNLLTFIFVFGAPFIYTSRTQNWAENDVLLFASLLLGVAFYGLEDMARKCQHPLGWDLEDHDLEIFGVRLNLDGQEMAKICGVQEPMEFMPYSELFDDLPDFFQVMSYKSYLQTTSVSMEGKIPLIPRRPGKKGSRCIFRRSTVNSTRFDLCKWLSKHCRIVPKESDVHCMERNAKCTLVWAQ 281
MKKLTKFNKDTFVLDPTRPRLVDLLTEEEVQQFRRMPVNSRPVYLITEMNLLAYRILGLSKETSIRINIDNKFQEVLAGWNGMLRVENLRIPFPYTHVVNLLTFIFVFGAPFIYTSRTQNWAENDVLLFASLLLGVAFYGLEDMARKCQHPLGWDLEDHDLEIFGVRLNLDGQEMAKICGVQEPMEFMPYSELFDDLPDFFQVMSYKSYLQTTSVSMEGKIPLIPRRPGKKGSRCIFRRSTVNSTRFDLCKWLSKHCRIVPKESDVHCMERNAKCTLVWAQ
Sbjct: 1 MKKLTKFNKDTFVLDPTRPRLVDLLTEEEVQQFRRMPVNSRPVYLITEMNLLAYRILGLSKETSIRINIDNKFQEVLAGWNGMLRVENLRIPFPYTHVVNLLTFIFVFGAPFIYTSRTQNWAENDVLLFASLLLGVAFYGLEDMARKCQHPLGWDLEDHDLEIFGVRLNLDGQEMAKICGVQEPMEFMPYSELFDDLPDFFQVMSYKSYLQTTSVSMEGKIPLIPRRPGKKGSRCIFRRSTVNSTRFDLCKWLSKHCRIVPKESDVHCMERNAKCTLVWAQ 281
BLAST of EWM20641.1 vs. NCBI_GenBank
Match: gi|676380227|ref|XP_009033392.1| (hypothetical protein AURANDRAFT_61213 [Aureococcus anophagefferens] >gi|323456480|gb|EGB12347.1| hypothetical protein AURANDRAFT_61213 [Aureococcus anophagefferens]) HSP 1 Score: 80.1073 bits (196), Expect = 1.984e-13 Identity = 54/181 (29.83%), Postives = 95/181 (52.49%), Query Frame = 0
Query: 7 FNKDTFVLDPTRPRLVDLLTEEEVQQFRRMPVNSRPVYLITE--MNLLAYRILGLSKETSIRINIDNKFQEVLAGWNGMLRVENLRIPFPYTHVVNLLTFIFVFG--APFIYTSRTQ---NWAENDVLLFASLLLGVAFYGLEDMARKCQHPLGWDLEDHDLEIFGVRLNLDGQEMAKICG 180
+NK T++LDP+RPRLVD+LT EV + + +R V L + M+ L L+++ + QE+L + R+ + +PF YT ++ +L FIFV+ P Y +RT+ +W +L S++ +YG+ +A + ++P + DHDL+ F +L+ + +AK
Sbjct: 178 YNKRTWILDPSRPRLVDMLTPREVATYGTVSSGAR-VMLASHSLMDALQRLAPSLAQDRAFTECSTRNIQELLDAFKSCQRIVDTPLPFTYTLILGVLLFIFVYSVPVPVAYWARTEKRLHWYSMSGIL-PSIVTAFFYYGVMQIAIEIENPFNFADVDHDLDGFADKLHSETLAIAKTVA 356
BLAST of EWM20641.1 vs. NCBI_GenBank
Match: gi|303278418|ref|XP_003058502.1| (membrane protein [Micromonas pusilla CCMP1545] >gi|226459662|gb|EEH56957.1| membrane protein [Micromonas pusilla CCMP1545]) HSP 1 Score: 79.337 bits (194), Expect = 6.332e-13 Identity = 49/153 (32.03%), Postives = 82/153 (53.59%), Query Frame = 0
Query: 18 RPRLVDLLTEEEVQQFRRMPVNSRPVYLITEMNLLA--YRILGLSKETSIRINIDNKFQEVLAGWNGMLRVENLRIPFPYTHVVNLLTFIFVFGAPFIYTSRTQNWAENDVLLFASLLLGVAFYGLEDMARKCQHPLGWDLEDHDLEIFGVRL 168
RP L LLT+ E +F+ + N+R ++ +M + +R LG + +I + + L + M R+ + ++PF Y H+VN L FIFVF APF++T+ + W + S ++ ++FYG+ ++AR + P W HDL G RL
Sbjct: 1201 RPSLGVLLTDAERAEFKALDFNNRANMVVWKMQSIVEHHRRLGHVSDRGA-FDIYHDLEGCLEAYKHMERIVSTKMPFQYLHMVNFLLFIFVFSAPFVFTTGFK-W----LSPIPSCIVAISFYGVAEVARSIEDPYSWVKPCHDLTGVGWRL 1347 HSP 2 Score: 73.9442 bits (180), Expect = 3.759e-11 Identity = 49/164 (29.88%), Postives = 81/164 (49.39%), Query Frame = 0
Query: 8 NKDTFVLDPT-RPRLVDLLTEEEVQQFRRMPVNSRP--VYLITEMNLLAYRILGLSKETSIRINIDNKFQEVLAGWNGMLRVENLRIPFPYTHVVNLLTFIFVFGAPFIYTSRTQNWAENDVLLFASLLLGVAFYGLEDMARKCQHPLGWDLEDHDLEIFGVRL 168
+++ + DPT +P L DLL E + M ++R V + +M + +R LG E + I + + L + M R+ + IPF Y H++ + F FVF APF++ + T W + S ++ V FYG+ +M + Q P W HDL G+R+
Sbjct: 741 DEECVMSDPTGKPPLPDLLKPGEAKTLLAMMPSNRCNWVAMRVQMIVETHRRLGNISERAA-FEIYQQLELCLGAYKAMERIVSTPIPFTYLHMLQFILFFFVFSAPFVFAT-TFRW----IAWLPSAIVAVGFYGINEMGKLIQDPFNWQQPCHDLSGVGLRI 898 HSP 3 Score: 70.8626 bits (172), Expect = 5.167e-10 Identity = 44/153 (28.76%), Postives = 73/153 (47.71%), Query Frame = 0
Query: 19 PRLVDLLT-EEEVQQFRRMPVNSRPVYLITEMNLLA--YRILGLSKETSIRINIDNKFQEVLAGWNGMLRVENLRIPFPYTHVVNLLTFIFVFGAPFIYTSRTQNWAENDVLLFASLLLGVAFYGLEDMARKCQHPLGWDLEDHDLEIFGVRL 168
P L LL E ++ P +RP ++T + + +R LG E ++ ++ Q V++ RV IPF Y + + +TF+F + APFI+T Q + F S LL +AFYG+ + + P W +HD+ G+R+
Sbjct: 1680 PSLGSLLKGASEANEYSEAPFQNRPNMVVTRIQAIVEHHRRLGHICERGA-FDLYSECQLVMSSLKACERVVTTPIPFQYVQICSFVTFLFTYSAPFIFTVSYQY-----ISFFPSCLLAMAFYGINSIGEVIERPFNWTEPNHDIAGVGLRV 1826
BLAST of EWM20641.1 vs. NCBI_GenBank
Match: gi|255076247|ref|XP_002501798.1| (membrane protein [Micromonas commoda] >gi|226517062|gb|ACO63056.1| membrane protein [Micromonas commoda]) HSP 1 Score: 78.9518 bits (193), Expect = 8.059e-13 Identity = 51/153 (33.33%), Postives = 82/153 (53.59%), Query Frame = 0
Query: 18 RPRLVDLLTEEEVQQFRRMPVNSRPVYLITEMNLLA--YRILGLSKETSIRINIDNKFQEVLAGWNGMLRVENLRIPFPYTHVVNLLTFIFVFGAPFIYTSRTQNWAENDVLLFASLLLGVAFYGLEDMARKCQHPLGWDLEDHDLEIFGVRL 168
RP L LLT+EE ++F + N+R ++ M + +R LG E +I + + L + M R+ + ++PF Y H+VN L FIFVF APF++T+ + W + S ++ ++FYG+ ++AR + P W HDL G RL
Sbjct: 1216 RPGLGVLLTDEEKEEFLAIDPNNRANMVVWRMQSIVEHHRRLGHVCERGA-FDIYHDLEGCLEAFKHMERIVSTKMPFQYLHMVNFLLFIFVFSAPFVFTTGFK-W----LSPIPSCIVAISFYGVAEVARSIEDPYSWTKPCHDLTGTGWRL 1362 HSP 2 Score: 76.6406 bits (187), Expect = 4.685e-12 Identity = 51/176 (28.98%), Postives = 91/176 (51.70%), Query Frame = 0
Query: 8 NKDTFVLDPT-RPRLVDLLTEEEVQQFRRMPVNSRPVYLITEMNLLA--YRILGLSKETSIRINIDNKFQEVLAGWNGMLRVENLRIPFPYTHVVNLLTFIFVFGAPFIYTSRTQNWAENDVLLFASLLLGVAFYGLEDMARKCQHPLGWDLEDHDLEIFGVRL---NLDGQEMAK 177
++D +D T +P L DLL E E ++ + ++R ++ + ++ +R LG E + I + + L+ + M R+ + IPF Y H++ + F FVF APF++T+ T +W + S+++ + FYG+ +M + Q P W HDL G+R+ NL E A+
Sbjct: 790 DEDCVKVDATGKPPLPDLLREGESERLLALMPSNRCNWIAMRIQIITETHRRLGNISERAA-FEIYQQLEICLSAYKAMERIVSTPIPFTYLHMLQFILFFFVFSAPFVFTT-TFHW----IGYVPSVIVAIGFYGINEMGKLIQDPFNWQQPCHDLSGLGLRIYRENLKIHEHAE 959 HSP 3 Score: 69.3218 bits (168), Expect = 1.493e-9 Identity = 44/158 (27.85%), Postives = 77/158 (48.73%), Query Frame = 0
Query: 28 EEVQQFRRMPVNSRPVYLITEMNLLA--YRILGLSKETSIRINIDNKFQEVLAGWNGMLRVENLRIPFPYTHVVNLLTFIFVFGAPFIYTSRTQNWAENDVLLFASLLLGVAFYGLEDMARKCQHPLGWDLEDHDLEIFGVRLNLDGQEMAKICGVQE 183
+EV +F +P +R ++T + + +R LG E + ++ + + VLA RV IPF Y + N +TF F + APFI+T Q + F + LL +AFYG+ + + P W +HDL G+R+ + ++ + C ++
Sbjct: 1669 QEVAEFSSIPFQNRANTVVTRIQSIVEHHRRLGHVCERAA-FDLYRECELVLASLKSCERVVTTPIPFQYLQMSNFVTFFFTYSAPFIFTVSYQY-----ISFFPACLLAMAFYGINSVGEVIERPFNWREPNHDLTGVGLRVWRECVQIHRRCASRD 1820 HSP 4 Score: 65.855 bits (159), Expect = 2.097e-8 Identity = 41/154 (26.62%), Postives = 83/154 (53.90%), Query Frame = 0
Query: 18 RPRLVDLLTEE-EVQQFRRMPVNSRPVYLITEMNLL--AYRILGLSKETSIRINIDNKFQEVLAGWNGMLRVENLRIPFPYTHVVNLLTFIFVFGAPFIYTSRTQNWAENDVLLFASLLLGVAFYGLEDMARKCQHPLGWDLEDHDLEIFGVRL 168
+PR+ D++ ++ E+ +F+ + +RP ++++ + +R +G E + +++ Q VL R+ IP+ Y H++N+L F FV+ PF++T+ + W + F S ++ +AFYG+ ++ R + P W+ HDL G R+
Sbjct: 297 KPRVPDIVKDKIELDEFKTLEPWNRPNVCVSKITAIIEHHRRVGNLGERAA-LDVFRDCQLVLDALKSAERIVTTPIPYQYLHMLNILLFFFVYSVPFVFTANFK-W----ITPFPSCVVALAFYGVNEIGRCMEDPYSWEDPCHDLSGVGWRI 444 HSP 5 Score: 62.7734 bits (151), Expect = 2.192e-7 Identity = 43/161 (26.71%), Postives = 75/161 (46.58%), Query Frame = 0
Query: 19 PRLVDLLTEEEVQQFRRMPVNSRPVYLITEMNLLAYRILGLSKETSI----RINIDNKFQEVLAGWNGMLRVENLRIPFPYTHVVNLLTFIFVFGAPFIYTSRTQNWAENDVLLFASLLLGVAFYGLEDMARKCQHPLGWDLEDHDLEIFGVRLNLDGQEM 175
P L LLT EE +++ +PV +R + E+ + R +E + ++ + VLA + R+ IP+ Y H+VNL+ F FVF AP ++T + + S +L + FYG+ ++ R P W +L G R++ + Q +
Sbjct: 2104 PSLATLLTPEERRRYADVPVGNRFNVCVAEIQRIVARN---QREGDLYEKAAYDVYKECDRVLAAFKTCERIVTTPIPYQYVHMVNLVLFFFVFSAPLVFTVTFKR-----LTPLPSGILALGFYGIWEVGRSMMDPFDWMEPCVNLTAIGRRISTEAQRI 2256
BLAST of EWM20641.1 vs. NCBI_GenBank
Match: gi|612392039|ref|XP_007511540.1| (membrane protein [Bathycoccus prasinos] >gi|412988325|emb|CCO17661.1| membrane protein [Bathycoccus prasinos]) HSP 1 Score: 69.707 bits (169), Expect = 1.139e-9 Identity = 48/154 (31.17%), Postives = 78/154 (50.65%), Query Frame = 0
Query: 18 RPRLVDLLTEE-EVQQFRRM-PVNSRPVYLITEMNLL-AYRILGLSKETSIRINIDNKFQEVLAGWNGMLRVENLRIPFPYTHVVNLLTFIFVFGAPFIYTSRTQNWAENDVLLFASLLLGVAFYGLEDMARKCQHPLGWDLEDHDLEIFGVRL 168
+P L+DLL + E++ F + P N + ++++ R LG E ++I +LAG R+ P Y H++ L F FV+ APF +T+ T +W + S LL +AFYG+ ++A+K ++P GW+ HDL G L
Sbjct: 252 KPSLLDLLQDPVEIEAFVHLEPFNRANAVVQKILDIVEKRRRLGQVCERGA-LDIYRDCSGILAGVKTCERITTTPTPNKYAHMLTTLLFFFVYSAPFCFTA-TFDW----LTPMPSALLAMAFYGVAEVAKKMENPFGWEAPSHDLSQLGAEL 399 HSP 2 Score: 67.0106 bits (162), Expect = 8.116e-9 Identity = 42/150 (28.00%), Postives = 75/150 (50.00%), Query Frame = 0
Query: 19 PRLVDLLTEEEVQQFRRMPVNSRPVYLITEMNLL---AYRILGLSKETSIRINIDNKFQEVLAGWNGMLRVENLRIPFPYTHVVNLLTFIFVFGAPFIYTSRTQNWAENDVLLFASLLLGVAFYGLEDMARKCQHPLGWDLEDHDLEIFG 165
P L +LTE E +SRP ++ + L A + +S+ + + D + L N + R+ ++P+ Y H++N F FV+ APFI+T+ W + ++L+ +AFYG ++AR ++P +D + HD+E G
Sbjct: 1168 PSLAVILTESEKDFMCGKLPSSRPALVVAKCQKLVEEARKRNDISERGAFDLYDD--LNDCLVACNNLERISETKMPWIYLHLLNFALFAFVYSAPFIFTAGF-GW----LSPAPAMLIAIAFYGTAEVARNMENPFDYDTDGHDIEAAG 1310
BLAST of EWM20641.1 vs. NCBI_GenBank
Match: gi|145349813|ref|XP_001419322.1| (predicted protein [Ostreococcus lucimarinus CCE9901] >gi|144579553|gb|ABO97615.1| predicted protein [Ostreococcus lucimarinus CCE9901]) HSP 1 Score: 63.1586 bits (152), Expect = 1.573e-7 Identity = 39/151 (25.83%), Postives = 73/151 (48.34%), Query Frame = 0
Query: 20 RLVDLLTEEEVQQFRRMPVNSRPVYLITEMNLLAYRILGLSKETSIRINID--NKFQEVLAGWNGMLRVENLRIPFPYTHVVNLLTFIFVFGAPFIYTSRTQNWAENDVLLFASLLLGVAFYGLEDMARKCQHPLGWDLEDHDLEIFGVRL 168
+L DL+ E E + + +PV++ P ++ +N + + G S + R + + K L G++RV + +P + H++ +L F +VF PF+ + Q W + +L+ +AFYG+ + + P W HDL G R+
Sbjct: 521 KLCDLVRESEHPELKSLPVHAFPTWVGMRLNAI-FEEYGRSGAMTERFSAEAYRKVCNSLQAMQGLMRVVSTPVPNRFRHLLQVLLFFYVFTMPFVLSVSYQ-W----ITSVPVILVALAFYGIAETSTSMMEPFSWTGPRHDLSGMGSRM 665 The following BLAST results are available for this feature:
BLAST of EWM20641.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 6
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|