EWM20651.1, cds10022 (CDS) Nannochloropsis gaditana

Overview
NameEWM20651.1
Unique Namecds10022
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037261.1:2182..2466 +
Alignment locationKK037261.1:2695..2802 +
Alignment locationKK037261.1:3093..3223 +
Alignment locationKK037261.1:3601..3745 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM20651.1
ProductProtein of unknown function DUF1640
Orig transcript idgnl|cribi|Naga_101145g1.1278.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037261.1supercontigKK037261.1:2182..2466 +
KK037261.1supercontigKK037261.1:2695..2802 +
KK037261.1supercontigKK037261.1:3093..3223 +
KK037261.1supercontigKK037261.1:3601..3745 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR024461DUF1640
Homology
BLAST of EWM20651.1 vs. NCBI_GenBank
Match: gi|585100453|gb|EWM20651.1| (Protein of unknown function DUF1640 [Nannochloropsis gaditana])

HSP 1 Score: 444.891 bits (1143), Expect = 6.010e-158
Identity = 222/222 (100.00%), Postives = 222/222 (100.00%), Query Frame = 0
Query:    1 MSLMLHPWRRWRRLGDRCLYRGLSSSFSSSSSSSSSSSSPSSPSSPSSSSSPPPLFSTPFNASPTLSGTPSAPSSQIHASLLGPGKAVVSFDTMKMCDSLQEAGFSKAQAQTVLRVLVAGMEECTLRSTAMIATRRDLLDLKSDLSERLFGSTMRFDVAQRHNKEVIERDLQSLRSDVNASIHAEIQKIEREMSNLEKVLTDRHLTRRELMEQRVSVLQVAW 222
            MSLMLHPWRRWRRLGDRCLYRGLSSSFSSSSSSSSSSSSPSSPSSPSSSSSPPPLFSTPFNASPTLSGTPSAPSSQIHASLLGPGKAVVSFDTMKMCDSLQEAGFSKAQAQTVLRVLVAGMEECTLRSTAMIATRRDLLDLKSDLSERLFGSTMRFDVAQRHNKEVIERDLQSLRSDVNASIHAEIQKIEREMSNLEKVLTDRHLTRRELMEQRVSVLQVAW
Sbjct:    1 MSLMLHPWRRWRRLGDRCLYRGLSSSFSSSSSSSSSSSSPSSPSSPSSSSSPPPLFSTPFNASPTLSGTPSAPSSQIHASLLGPGKAVVSFDTMKMCDSLQEAGFSKAQAQTVLRVLVAGMEECTLRSTAMIATRRDLLDLKSDLSERLFGSTMRFDVAQRHNKEVIERDLQSLRSDVNASIHAEIQKIEREMSNLEKVLTDRHLTRRELMEQRVSVLQVAW 222          
BLAST of EWM20651.1 vs. NCBI_GenBank
Match: gi|553187452|ref|XP_005854614.1| (hypothetical protein NGA_0165400, partial [Nannochloropsis gaditana CCMP526] >gi|422294447|gb|EKU21747.1| hypothetical protein NGA_0165400, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 354.369 bits (908), Expect = 7.023e-123
Identity = 174/175 (99.43%), Postives = 174/175 (99.43%), Query Frame = 0
Query:   48 SSSSPPPLFSTPFNASPTLSGTPSAPSSQIHASLLGPGKAVVSFDTMKMCDSLQEAGFSKAQAQTVLRVLVAGMEECTLRSTAMIATRRDLLDLKSDLSERLFGSTMRFDVAQRHNKEVIERDLQSLRSDVNASIHAEIQKIEREMSNLEKVLTDRHLTRRELMEQRVSVLQVAW 222
            SS SPPPLFSTPFNASPTLSGTPSAPSSQIHASLLGPGKAVVSFDTMKMCDSLQEAGFSKAQAQTVLRVLVAGMEECTLRSTAMIATRRDLLDLKSDLSERLFGSTMRFDVAQRHNKEVIERDLQSLRSDVNASIHAEIQKIEREMSNLEKVLTDRHLTRRELMEQRVSVLQVAW
Sbjct:    1 SSPSPPPLFSTPFNASPTLSGTPSAPSSQIHASLLGPGKAVVSFDTMKMCDSLQEAGFSKAQAQTVLRVLVAGMEECTLRSTAMIATRRDLLDLKSDLSERLFGSTMRFDVAQRHNKEVIERDLQSLRSDVNASIHAEIQKIEREMSNLEKVLTDRHLTRRELMEQRVSVLQVAW 175          
BLAST of EWM20651.1 vs. NCBI_GenBank
Match: gi|953499884|emb|CEG38525.1| (Uncharacterized membrane protein [Plasmopara halstedii])

HSP 1 Score: 92.0485 bits (227), Expect = 1.956e-19
Identity = 49/133 (36.84%), Postives = 83/133 (62.41%), Query Frame = 0
Query:   89 VSFDTMKMCDSLQEAGFSKAQAQTVLRVLVAGMEECTLRSTAMIATRRDLLDLKSDLSERLFGSTMRFDVAQRHNKEVIERDLQSLRSDVNASIHAEIQKIEREMSNLE-KVLTDRHLTRRELMEQRVSVLQV 220
            + FDT  +  SLQE GFS  Q++ +L V+   M +  +    ++AT+ + ++LK++LSER+F ST++FD+AQRH++E++ERD  +L+ D+      +  KI  E++ LE K L  +      L E R+S+ +V
Sbjct:   52 LHFDTHHVVQSLQEKGFSIQQSEAILDVMKDAMADSLVAQARILATKSEHVELKAELSERVFNSTLKFDIAQRHSRELLERDFNTLKQDIRMLEKIDFDKIRMEIAELEKKFLLQKQAEDETLNELRLSMEKV 184          
BLAST of EWM20651.1 vs. NCBI_GenBank
Match: gi|673044185|ref|XP_008876053.1| (hypothetical protein, variant [Aphanomyces invadans] >gi|574468333|gb|ETV95352.1| hypothetical protein, variant [Aphanomyces invadans])

HSP 1 Score: 92.0485 bits (227), Expect = 2.108e-19
Identity = 53/164 (32.32%), Postives = 92/164 (56.10%), Query Frame = 0
Query:   58 TPFNASPTLSGTPSAPSSQIHASLLGPGKAVVSFDTMKMCDSLQEAGFSKAQAQTVLRVLVAGMEECTLRSTAMIATRRDLLDLKSDLSERLFGSTMRFDVAQRHNKEVIERDLQSLRSDVNASIHAEIQKIEREMSNLEKVLTDRHLTRRELMEQRVSVLQVA 221
            T  N   TLSG+             GP +A + FD+ +    LQ  GFS  Q++ VL  L + M+E       M+AT+ + + LKS+L++R+F ST++FD+AQRH ++++ERD  +L+ D+      +  K+  E+ ++EK    R L ++++ ++ V  L +A
Sbjct:   32 TSVNTMTTLSGSDGQ----------GP-RATLPFDSNRFVTQLQHQGFSAEQSEAVLDALKSTMKEALDVQDGMLATKSEHVQLKSELTDRVFNSTLKFDIAQRHMRDLLERDFNNLKQDIRMIEKNDFDKVRNEIVDMEK----RFLLQKQITDRMVHKLHLA 180          
BLAST of EWM20651.1 vs. NCBI_GenBank
Match: gi|673044183|ref|XP_008876052.1| (hypothetical protein H310_11241 [Aphanomyces invadans] >gi|574468332|gb|ETV95351.1| hypothetical protein H310_11241 [Aphanomyces invadans])

HSP 1 Score: 92.4337 bits (228), Expect = 2.471e-19
Identity = 53/164 (32.32%), Postives = 92/164 (56.10%), Query Frame = 0
Query:   58 TPFNASPTLSGTPSAPSSQIHASLLGPGKAVVSFDTMKMCDSLQEAGFSKAQAQTVLRVLVAGMEECTLRSTAMIATRRDLLDLKSDLSERLFGSTMRFDVAQRHNKEVIERDLQSLRSDVNASIHAEIQKIEREMSNLEKVLTDRHLTRRELMEQRVSVLQVA 221
            T  N   TLSG+             GP +A + FD+ +    LQ  GFS  Q++ VL  L + M+E       M+AT+ + + LKS+L++R+F ST++FD+AQRH ++++ERD  +L+ D+      +  K+  E+ ++EK    R L ++++ ++ V  L +A
Sbjct:   32 TSVNTMTTLSGSDGQ----------GP-RATLPFDSNRFVTQLQHQGFSAEQSEAVLDALKSTMKEALDVQDGMLATKSEHVQLKSELTDRVFNSTLKFDIAQRHMRDLLERDFNNLKQDIRMIEKNDFDKVRNEIVDMEK----RFLLQKQITDRMVHKLHLA 180          
BLAST of EWM20651.1 vs. NCBI_GenBank
Match: gi|675165507|ref|XP_008891638.1| (hypothetical protein, variant [Phytophthora parasitica INRA-310] >gi|566027275|gb|ETI50186.1| hypothetical protein, variant [Phytophthora parasitica P1569] >gi|567964584|gb|ETK90069.1| hypothetical protein, variant [Phytophthora parasitica] >gi|567993285|gb|ETL43466.1| hypothetical protein, variant [Phytophthora parasitica] >gi|568022585|gb|ETL96649.1| hypothetical protein, variant [Phytophthora parasitica] >gi|568052937|gb|ETM49794.1| hypothetical protein, variant [Phytophthora parasitica] >gi|568107750|gb|ETN22374.1| hypothetical protein, variant [Phytophthora parasitica INRA-310] >gi|570330961|gb|ETO78909.1| hypothetical protein, variant [Phytophthora parasitica P1976] >gi|570954693|gb|ETP19950.1| hypothetical protein, variant [Phytophthora parasitica CJ01A1] >gi|570989744|gb|ETP47893.1| hypothetical protein, variant [Phytophthora parasitica P10297] >gi|970632048|gb|KUF78457.1| hypothetical protein AM587_10007003 [Phytophthora nicotianae])

HSP 1 Score: 91.2781 bits (225), Expect = 7.339e-19
Identity = 48/131 (36.64%), Postives = 83/131 (63.36%), Query Frame = 0
Query:   91 FDTMKMCDSLQEAGFSKAQAQTVLRVLVAGMEECTLRSTAMIATRRDLLDLKSDLSERLFGSTMRFDVAQRHNKEVIERDLQSLRSDVNASIHAEIQKIEREMSNLE-KVLTDRHLTRRELMEQRVSVLQV 220
            FDT  +  SLQ+ GFS  Q++ +L+V+   M +     + ++AT+ + ++LK++LSER+F ST++FD+AQRH++E++ERD  +L+ D+      +  KI  E++ LE K L  +      L E R+S+ +V
Sbjct:   79 FDTHNVVKSLQDKGFSPDQSEAILQVMKDAMADSLEAQSRILATKSEHVELKAELSERVFNSTLKFDIAQRHSRELLERDFNTLKQDIRMLEKIDFDKIRMEIAELEKKFLLQKQAEDETLNELRLSMEKV 209          
BLAST of EWM20651.1 vs. NCBI_GenBank
Match: gi|695389191|ref|XP_009519371.1| (hypothetical protein PHYSODRAFT_478596 [Phytophthora sojae] >gi|348684268|gb|EGZ24083.1| hypothetical protein PHYSODRAFT_478596 [Phytophthora sojae])

HSP 1 Score: 88.9669 bits (219), Expect = 1.553e-18
Identity = 42/108 (38.89%), Postives = 72/108 (66.67%), Query Frame = 0
Query:   91 FDTMKMCDSLQEAGFSKAQAQTVLRVLVAGMEECTLRSTAMIATRRDLLDLKSDLSERLFGSTMRFDVAQRHNKEVIERDLQSLRSDVNASIHAEIQKIEREMSNLEK 198
            FDT  +  SLQE GF+  Q++ +L+V+   M       + ++AT+ + ++LK++LSER+F ST++FD+AQRH++E++ERD  +L+ D+      +  KI  E++ LEK
Sbjct:   27 FDTHNVVKSLQERGFTVDQSEAILQVMKEAMAASLEAQSRILATKSEHVELKAELSERVFNSTLKFDIAQRHSRELLERDFNTLKQDIRMLEKIDFDKIRMEIAELEK 134          
BLAST of EWM20651.1 vs. NCBI_GenBank
Match: gi|1173952063|gb|OQR99814.1| (hypothetical protein ACHHYP_04332 [Achlya hypogyna])

HSP 1 Score: 88.9669 bits (219), Expect = 3.003e-18
Identity = 45/111 (40.54%), Postives = 68/111 (61.26%), Query Frame = 0
Query:   88 VVSFDTMKMCDSLQEAGFSKAQAQTVLRVLVAGMEECTLRSTAMIATRRDLLDLKSDLSERLFGSTMRFDVAQRHNKEVIERDLQSLRSDVNASIHAEIQKIEREMSNLEK 198
            V  FD+ K    LQ  GFS  QA+ +L  L + MEE        +AT+ D L LKS+LSER+F +T++FD+AQRH KE+++RD  +L+ ++     A+  K+  E+  +EK
Sbjct:   32 VYPFDSHKFVTQLQYQGFSLEQAEAILEALKSTMEEGLETQETGLATKADHLTLKSELSERVFNTTLKFDIAQRHMKEILDRDFDNLKQEIRIIEKADFDKVLAEIMQVEK 142          
BLAST of EWM20651.1 vs. NCBI_GenBank
Match: gi|301105481|ref|XP_002901824.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262099162|gb|EEY57214.1| conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 89.3521 bits (220), Expect = 3.679e-18
Identity = 42/108 (38.89%), Postives = 72/108 (66.67%), Query Frame = 0
Query:   91 FDTMKMCDSLQEAGFSKAQAQTVLRVLVAGMEECTLRSTAMIATRRDLLDLKSDLSERLFGSTMRFDVAQRHNKEVIERDLQSLRSDVNASIHAEIQKIEREMSNLEK 198
            FDT  +  SLQ+ GFS  Q++ +L V+   M +     + ++AT+ + ++LK++LSER+F ST++FD+AQRH++E++ERD  +L+ D+      +  KI  E++ LEK
Sbjct:   82 FDTHNVVKSLQDRGFSTDQSEAILHVMKDAMADSLEAQSRILATKSEHVELKAELSERVFNSTLKFDIAQRHSRELLERDFNTLKQDIRMLEKIDFDKIRMEIAELEK 189          
BLAST of EWM20651.1 vs. NCBI_GenBank
Match: gi|698802574|ref|XP_009834316.1| (hypothetical protein, variant [Aphanomyces astaci] >gi|574110693|gb|ETV76191.1| hypothetical protein, variant [Aphanomyces astaci])

HSP 1 Score: 87.4261 bits (215), Expect = 1.344e-17
Identity = 44/131 (33.59%), Postives = 82/131 (62.60%), Query Frame = 0
Query:   91 FDTMKMCDSLQEAGFSKAQAQTVLRVLVAGMEECTLRSTAMIATRRDLLDLKSDLSERLFGSTMRFDVAQRHNKEVIERDLQSLRSDVNASIHAEIQKIEREMSNLEKVLTDRHLTRRELMEQRVSVLQVA 221
            FD+ +    LQ  GFS  Q++ VL  L + M+E  +   A++AT+ + + LKS+L++R+F ST++FD+AQRH ++++ERD  +L+ D+      +  K+  E+ ++EK    R L ++++ ++ V  L +A
Sbjct:   50 FDSNRFVTQLQYQGFSVEQSEAVLDALRSTMKEALVSQDALLATKSEHVQLKSELTDRVFNSTLKFDIAQRHMRDLLERDFNNLKQDIRMIEKNDFDKVRNEIVDMEK----RFLMQKQITDRMVHKLHLA 176          
The following BLAST results are available for this feature:
BLAST of EWM20651.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585100453|gb|EWM20651.1|6.010e-158100.00Protein of unknown function DUF1640 [Nannochlorops... [more]
gi|553187452|ref|XP_005854614.1|7.023e-12399.43hypothetical protein NGA_0165400, partial [Nannoch... [more]
gi|953499884|emb|CEG38525.1|1.956e-1936.84Uncharacterized membrane protein [Plasmopara halst... [more]
gi|673044185|ref|XP_008876053.1|2.108e-1932.32hypothetical protein, variant [Aphanomyces invadan... [more]
gi|673044183|ref|XP_008876052.1|2.471e-1932.32hypothetical protein H310_11241 [Aphanomyces invad... [more]
gi|675165507|ref|XP_008891638.1|7.339e-1936.64hypothetical protein, variant [Phytophthora parasi... [more]
gi|695389191|ref|XP_009519371.1|1.553e-1838.89hypothetical protein PHYSODRAFT_478596 [Phytophtho... [more]
gi|1173952063|gb|OQR99814.1|3.003e-1840.54hypothetical protein ACHHYP_04332 [Achlya hypogyna... [more]
gi|301105481|ref|XP_002901824.1|3.679e-1838.89conserved hypothetical protein [Phytophthora infes... [more]
gi|698802574|ref|XP_009834316.1|1.344e-1733.59hypothetical protein, variant [Aphanomyces astaci]... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna10053rna10053Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications