EWM20685.1, cds9988 (CDS) Nannochloropsis gaditana

Overview
NameEWM20685.1
Unique Namecds9988
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037260.1:12418..12594 +
Alignment locationKK037260.1:12847..13074 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM20685.1
ProductProtein of unknown function DUF1764, eukaryotic
Orig transcript idgnl|cribi|Naga_100517g1.9944.mrna
GbkeyCDS
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037260.1supercontigKK037260.1:12418..12594 +
KK037260.1supercontigKK037260.1:12847..13074 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM20685.1 vs. NCBI_GenBank
Match: gi|585100506|gb|EWM20685.1| (Protein of unknown function DUF1764, eukaryotic [Nannochloropsis gaditana])

HSP 1 Score: 275.789 bits (704), Expect = 7.953e-94
Identity = 134/134 (100.00%), Postives = 134/134 (100.00%), Query Frame = 0
Query:    1 MNLGTGGEADMGRARTNTAFRPPRPQSKIKKDSRTCNERSHTNRETADVEDKFAGKEEKNLLTDAVRQAGKEIDGLFNDLTQRKRVAAASATTKKAVVKIKKADSRPPSHTVGKNEGRRYDPQRDDPDVRPCKW 134
            MNLGTGGEADMGRARTNTAFRPPRPQSKIKKDSRTCNERSHTNRETADVEDKFAGKEEKNLLTDAVRQAGKEIDGLFNDLTQRKRVAAASATTKKAVVKIKKADSRPPSHTVGKNEGRRYDPQRDDPDVRPCKW
Sbjct:    1 MNLGTGGEADMGRARTNTAFRPPRPQSKIKKDSRTCNERSHTNRETADVEDKFAGKEEKNLLTDAVRQAGKEIDGLFNDLTQRKRVAAASATTKKAVVKIKKADSRPPSHTVGKNEGRRYDPQRDDPDVRPCKW 134          
BLAST of EWM20685.1 vs. NCBI_GenBank
Match: gi|585100505|gb|EWM20684.1| (Protein of unknown function DUF1764, eukaryotic [Nannochloropsis gaditana])

HSP 1 Score: 264.233 bits (674), Expect = 7.051e-89
Identity = 132/133 (99.25%), Postives = 132/133 (99.25%), Query Frame = 0
Query:    1 MNLGTGGEADMGRARTNTAFRPPRPQSKIKKDSRTCNERSHTNRETADVEDKFAGKEEKNLLTDAVRQAGKEIDGLFNDLTQRKRVAAASATTKKAVVKIKKADSRPPSHTVGKNEGRRYDPQRDDPDVRPCK 133
            MNLGTGGEADMGRARTNTAFRPPRPQSKIKKDSRTCNERSHTNRETADVEDKFAGKEEKNLLTDAVRQAGKEIDGLFNDLTQRKRVAAASATTKKAVVKIKKADSRPPSHTVGKNEGRRYDPQRDDPDVRP K
Sbjct:    1 MNLGTGGEADMGRARTNTAFRPPRPQSKIKKDSRTCNERSHTNRETADVEDKFAGKEEKNLLTDAVRQAGKEIDGLFNDLTQRKRVAAASATTKKAVVKIKKADSRPPSHTVGKNEGRRYDPQRDDPDVRPWK 133          
The following BLAST results are available for this feature:
BLAST of EWM20685.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585100506|gb|EWM20685.1|7.953e-94100.00Protein of unknown function DUF1764, eukaryotic [N... [more]
gi|585100505|gb|EWM20684.1|7.051e-8999.25Protein of unknown function DUF1764, eukaryotic [N... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna10019rna10019Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications