rna10011, rna10011 (mRNA) Nannochloropsis gaditana

Overview
Namerna10011
Unique Namerna10011
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length528
Alignment locationKK037259.1:118931..120346 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100674g2.10419.mrna
Orig protein idgnl|cribi|Naga_100674g2.10419
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037259.1supercontigKK037259.1:118931..120346 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100674g2gene9713Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna10011rna10011-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM20694.1cds9980Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna10011 ID=rna10011|Name=rna10011|organism=Nannochloropsis gaditana|type=mRNA|length=528bp
ATGAACCCTCACACAACCTACATTATCTGCCCCTTTCCCCCACCCCCCCT
CCTCCGTTCCGATCCTCAGGTCTACACGGCAGTGGTGGAGCTCTCCGCCC
GTTTGGTCGCCGAGCCCAAGGTCCTGACAGCCGTCAATGAGCTCCTCCTC
GCTTCGTCACACAAGGTGCTGGAGGACCCCCAGGTCGTGGATCACTCCAA
GACCTTTGTGGCGGAGGTGGTGGCCGATGACGCCTTGCAAAGGACAGGTC
AGAGGGAGGGAGGGAGGGAGGGAAGTCAAGGCCTGGTGGCGGAGTGTCTC
CGCCCCCAGTCCCGACGACGCCTGACATGTCCATGGCCCCCGCCGCCTTT
CCTCTTCCCTTCCTTCCCCTCGTCTTCCCTCCTCAGGGGGCACGGCCATA
TGGAACTCGTTTCAATATTCCTTCCAGCCAAAACTGGCCCGGGTGCTTTG
GTTCGGTCTCCTATGCGGGGTCGTGGCATTCATGCGGAGTGGTGGGCGGG
ACGATGGGTTGGGGGGGAATGCGTTTGA
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protein sequence of rna10011

>rna10011-protein ID=rna10011-protein|Name=rna10011|organism=Nannochloropsis gaditana|type=polypeptide|length=286bp
MDTPSPAFRSLFVLVGSGNPSKIAAVRLAFLSLYSSLDPESLHVEGLPVD
SGVSAQPINDEETYRGAIMRAQNVMRLWKEKEGERRRKEEKLGGQMVEGR
GAGKREEQDKRKRGQNERQQGEKGKESNQCTGGTGKPCEICKGCLHVCST
VGAEEGSLLLPDYVVGLEGGVKEEPFPSLCPPLAPPSSPPLHCFAWMAIL
EPRTGRWSGAKTASFPLPGIVATMVRAGVELGEADDRVFGREKSKERDGV
VGLLTGGIVDRAAFYAPAVVLAMIPFGRYRGRYAGG
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mRNA from alignment at KK037259.1:118931..120346+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna10011 ID=rna10011|Name=rna10011|organism=Nannochloropsis gaditana|type=mRNA|length=1416bp|location=Sequence derived from alignment at KK037259.1:118931..120346+ (Nannochloropsis gaditana)
ATAGCCATGCTGATTATTTCGAGCAGGAAACCCCTGAGGACCGCACACGA
GGCTTTTGAGGTCTGTATAATTCGAAAATTTCATACGTGTGCAGATTTCA
CTGATTCGCCCTGCTTTGGTGCTTTGTCGGCGCATAAAACGAACGAGGAA
ACGATCCCCCGTCATGGTTTCACGCACAGGTAGTTGCAGGGAAATTCACA
CGGTGCCATTGAAGTGCGAGGATGGACACCCCAAGCCCTGCTTTCCGCTC
TCTTTTCGTCCTGGTGGGCTCGGGTAACCCAAGCAAGATCGCCGCTGTCC
gtctcgccttcctctccctctatTCCTCCCTCGATCCCGAGTCCCTACAC
GTGGAGGGCTTGCCAGTAGATTCAGGTGTCAGCGCACAACCCATCAACGA
CGAGGAGACGTACCGTGGCGCGATCATGCGGGCGCAGAACGTCATGCggt
tgtggaaggagaaagagggggaaaggaggcgaaaagaagaaaaactTGGA
GGGCAGATGgttgaaggaaggggggcaggaaagagagaagagcaagacaa
gaggaagcgaggtcAAAATGAGCGTCaacaaggagaaaagggtaAAGAAA
GCAACCAATGCACAGGTGGGACGGGAAAACCATGCGAGATATGCAAGGGG
TGCTTACATGTCTGTTCCACGgtgggcgcggaggagggtagcctcctcct
tccagattACGTGGTGGGcctcgagggaggagtgaaggaagaacctttcc
cgtccctttgtcctccccttgcccctccttcctctcctcccctccattgC
TTCGCATGGATGGCCATTTTGGAACCGAGGACGGGCCGTTGGAGTGGCGC
GAAgaccgcctccttccctcttcccgggATAGTGGCGACCATGGTGCGGG
CAGGGGTAGAGCTGGGCGAGGCCGACGACCGGGTATTCGGGCGGGAaaaa
agcaaggaaagagaCGGGGTGGTGGGCCTCTTGACAGGGGGAATTGTGGA
CCGGGCCGCGTTTTACGCCCcggcggtggtgctggcgatGATTCCCTTTG
GGAGGTATCGAGGGAGGTATGCTGGAGGatgagaggtggaggaagaacga
gggtgagagggggaggaagaaaggcagagaaggagggtgagagagggagg
aagaaaggcagaGAATAAGGCATGAACTAtcgagaggaggtggtgagagC
AGGCAATGGAGCCTGTGGCCCTCAGGAAAGGAATCTCTCTAGGAGaacgt
ctccttccctttccccaccgcgGAGCGCGCTTTCACTTGAAAAGGAATGT
TCTCGCCAAAGAAATATGTATACAAACAGATACATATGGATGTGCAGTCA
TActacatatatatatgtagTCATCTTCCCGCTCATGTAAATGTCGACGC
ATCCTTCCCTGGTCGC
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Coding sequence (CDS) from alignment at KK037259.1:118931..120346+

>rna10011 ID=rna10011|Name=rna10011|organism=Nannochloropsis gaditana|type=CDS|length=861bp|location=Sequence derived from alignment at KK037259.1:118931..120346+ (Nannochloropsis gaditana)
ATGGACACCCCAAGCCCTGCTTTCCGCTCTCTTTTCGTCCTGGTGGGCTC
GGGTAACCCAAGCAAGATCGCCGCTGTCCgtctcgccttcctctccctct
atTCCTCCCTCGATCCCGAGTCCCTACACGTGGAGGGCTTGCCAGTAGAT
TCAGGTGTCAGCGCACAACCCATCAACGACGAGGAGACGTACCGTGGCGC
GATCATGCGGGCGCAGAACGTCATGCggttgtggaaggagaaagaggggg
aaaggaggcgaaaagaagaaaaactTGGAGGGCAGATGgttgaaggaagg
ggggcaggaaagagagaagagcaagacaagaggaagcgaggtcAAAATGA
GCGTCaacaaggagaaaagggtaAAGAAAGCAACCAATGCACAGGTGGGA
CGGGAAAACCATGCGAGATATGCAAGGGGTGCTTACATGTCTGTTCCACG
gtgggcgcggaggagggtagcctcctccttccagattACGTGGTGGGcct
cgagggaggagtgaaggaagaacctttcccgtccctttgtcctccccttg
cccctccttcctctcctcccctccattgCTTCGCATGGATGGCCATTTTG
GAACCGAGGACGGGCCGTTGGAGTGGCGCGAAgaccgcctccttccctct
tcccgggATAGTGGCGACCATGGTGCGGGCAGGGGTAGAGCTGGGCGAGG
CCGACGACCGGGTATTCGGGCGGGAaaaaagcaaggaaagagaCGGGGTG
GTGGGCCTCTTGACAGGGGGAATTGTGGACCGGGCCGCGTTTTACGCCCc
ggcggtggtgctggcgatGATTCCCTTTGGGAGGTATCGAGGGAGGTATG
CTGGAGGatga
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Synonyms
Publications