EWM20696.1, cds9979 (CDS) Nannochloropsis gaditana

Overview
NameEWM20696.1
Unique Namecds9979
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037259.1:117170..117334 +
Alignment locationKK037259.1:117722..118084 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM20696.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100674g3.10421.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037259.1supercontigKK037259.1:117170..117334 +
KK037259.1supercontigKK037259.1:117722..118084 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM20696.1 vs. NCBI_GenBank
Match: gi|585100519|gb|EWM20696.1| (hypothetical protein Naga_100674g3 [Nannochloropsis gaditana])

HSP 1 Score: 355.525 bits (911), Expect = 4.011e-124
Identity = 175/175 (100.00%), Postives = 175/175 (100.00%), Query Frame = 0
Query:    1 MNPHTTYIICPFPPPPLLRSDPQVYTAVVELSARLVAEPKVLTAVNELLLASSHKVLEDPQVVDHSKTFVAEVVADDALQRTGQREGGREGSQGLVAECLRPQSRRRLTCPWPPPPFLFPSFPSSSLLRGHGHMELVSIFLPAKTGPGALVRSPMRGRGIHAEWWAGRWVGGECV 175
            MNPHTTYIICPFPPPPLLRSDPQVYTAVVELSARLVAEPKVLTAVNELLLASSHKVLEDPQVVDHSKTFVAEVVADDALQRTGQREGGREGSQGLVAECLRPQSRRRLTCPWPPPPFLFPSFPSSSLLRGHGHMELVSIFLPAKTGPGALVRSPMRGRGIHAEWWAGRWVGGECV
Sbjct:    1 MNPHTTYIICPFPPPPLLRSDPQVYTAVVELSARLVAEPKVLTAVNELLLASSHKVLEDPQVVDHSKTFVAEVVADDALQRTGQREGGREGSQGLVAECLRPQSRRRLTCPWPPPPFLFPSFPSSSLLRGHGHMELVSIFLPAKTGPGALVRSPMRGRGIHAEWWAGRWVGGECV 175          
BLAST of EWM20696.1 vs. NCBI_GenBank
Match: gi|223994337|ref|XP_002286852.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220978167|gb|EED96493.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 63.5438 bits (153), Expect = 1.010e-8
Identity = 30/66 (45.45%), Postives = 41/66 (62.12%), Query Frame = 0
Query:   18 LRSDPQVYTAVVELSARLVAEPKVLTAVNELLLASSHKVLEDPQVVDHSKTFVAEVVADDALQRTG 83
            L +D +VY  + +L  ++  E  VL A  +LL  S+H+ L DP V+DHS  F  EVV DD +QRTG
Sbjct:  140 LVNDEEVYAELTKLVVQIGEEKDVLQATQKLLTESAHRTLNDPDVLDHSMEFATEVVGDDVVQRTG 205          
BLAST of EWM20696.1 vs. NCBI_GenBank
Match: gi|397624251|gb|EJK67321.1| (hypothetical protein THAOC_11664 [Thalassiosira oceanica])

HSP 1 Score: 58.151 bits (139), Expect = 8.413e-7
Identity = 29/66 (43.94%), Postives = 39/66 (59.09%), Query Frame = 0
Query:   18 LRSDPQVYTAVVELSARLVAEPKVLTAVNELLLASSHKVLEDPQVVDHSKTFVAEVVADDALQRTG 83
            L +D +VY  +  L  ++  EP+VL A   LL  S+H  L D  V++HS  F   VV DDA+QRTG
Sbjct:  235 LINDDEVYRELTRLVVKIGEEPEVLDATQNLLSKSAHNTLNDRDVLEHSMEFATVVVGDDAVQRTG 300          
The following BLAST results are available for this feature:
BLAST of EWM20696.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 3
Match NameE-valueIdentityDescription
gi|585100519|gb|EWM20696.1|4.011e-124100.00hypothetical protein Naga_100674g3 [Nannochloropsi... [more]
gi|223994337|ref|XP_002286852.1|1.010e-845.45predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|397624251|gb|EJK67321.1|8.413e-743.94hypothetical protein THAOC_11664 [Thalassiosira oc... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna10010rna10010Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications