rna10010, rna10010 (mRNA) Nannochloropsis gaditana

Overview
Namerna10010
Unique Namerna10010
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length738
Alignment locationKK037259.1:117170..118084 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100674g3.10421.mrna
Orig protein idgnl|cribi|Naga_100674g3.10421
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037259.1supercontigKK037259.1:117170..118084 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100674g3gene9712Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna10010rna10010-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM20696.1cds9979Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna10010 ID=rna10010|Name=rna10010|organism=Nannochloropsis gaditana|type=mRNA|length=738bp
ATGAATCGTCCCAAGCCGGGCGGGGTCTCGCCCGTGCGAAAATTCGTGGG
CAAGAATTTCCTGAAGCGGGTGGCGGAGGAAGGGAAGGATGTTCTGGTGC
TGGTCACCCGTCCCCTCTGTCCCTCCTGCCTGGACCTGGCTCTCTCCTTC
GAGCTCCTCGGGAAGGCCCTGCAGGCGGACACGCGCGTGGTGCTGGGAAA
GATCGACGCCCTTCTGAACGACCTCCCTCCCTCCGTCCTCTCCCCCTCCC
TCTCCCCAGCCCTCCCTCTCCTCCTCCTCTTCCCCGCCAAGAACAAGCCC
TGGGACGAGGGCGGGGGGGAGGGAGGGAGGGAGGGAGGGGGGCTGCCGGC
TTTCGTCACCCTGCCTGACCCCTCCCCCGCCCTCCACGACTTGGCGGAAT
TTCTCTCCCGGGAAGGATCTTTTGGGAGCGAGTTGAAGATCGCGACGCTA
GAGCAGATGGGCGCCTTGGCCATCGACGAGGAAGTCGTCAGGGCACGTCT
CGAAGCTCAGGAACGCAGGGTGTTGCGCAACCATTTGCGGCGACGATATT
CGCACCCTCTTCTCGACAAGATCGCCGGCGAAGTCGTCTTTGACGGGCAT
CGATGGCACACGTGGCTGGGAGGGTTGTCCCTCCTCATCAACCTTGCCTT
TTTTTTGTCCTGGTATGCGGTCTCGAGTACGGCCGCCGCGAAGAAGAAAA
GGGGGAAAAAGTTAGCACATGGGCAAAAGGCAGACTAG
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protein sequence of rna10010

>rna10010-protein ID=rna10010-protein|Name=rna10010|organism=Nannochloropsis gaditana|type=polypeptide|length=175bp
MNPHTTYIICPFPPPPLLRSDPQVYTAVVELSARLVAEPKVLTAVNELLL
ASSHKVLEDPQVVDHSKTFVAEVVADDALQRTGQREGGREGSQGLVAECL
RPQSRRRLTCPWPPPPFLFPSFPSSSLLRGHGHMELVSIFLPAKTGPGAL
VRSPMRGRGIHAEWWAGRWVGGECV
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mRNA from alignment at KK037259.1:117170..118084+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna10010 ID=rna10010|Name=rna10010|organism=Nannochloropsis gaditana|type=mRNA|length=915bp|location=Sequence derived from alignment at KK037259.1:117170..118084+ (Nannochloropsis gaditana)
ATGAACCCTCACACAACCTACATTatctgcccctttcccccaccccccct
cctccgttccGATCCTCAGGTCTACACGGCAGTGGTGGAGCTCTCCGCCC
GTTTGGTCGCCGAGCCCAAGGTCCTGACAGCCGTCAatgagctcctcctc
gcttcgtCACacaaggtagggagggagggcgggagggaaggagggaggga
atcagggaggggagggtggttTCTCAGTCTGGCTGGCTCTTGGTGAGAGG
GGTGAAAGCGGCGGGTGAAACCACCCAGCACGCTACGACGACGTTTTTCC
CTAGTTCCCTTATGTCCTTCAAAACTAACTTTTTGATTGTATGTTGTATT
ATTATCCGTCATGATGATTCCTCCAATCATTCCTTCTGATACAATCCTAT
GACCTTTACTCTTGGACACGGGCTTGGTCCTGGGccttcccgcctgccct
ctttcttcccctccttgccccttgcccctccccctgtgcccccttcctcc
ggtCACCCTCGTTCGCTTTTATACCCCCTGTTGCTCCGGCATTGCCCCGT
AGGTGCTGGAGGACCCCCAGGTCGTGGATCACTCCAAGACCTTtgtggcg
gaggtggtggccgatGACGCCTTGCAAAGGACAggtcagagggagggagg
gagggagggaagtcaAGGCCTGGTGGCGGAGTGTCTCCGCCCCCAGTCCC
GACGACGCCTGACATGTCCatggcccccgccgcctttcctcttcccttcc
ttcccctcgtcttccctcctcagggGGCACGGCCATATGGAACTCGTTTC
AATATTCCTTCCAGCCAAAACTGGCCCGGGTGCTTTGGTTCGGTCTCCTA
TGCGGGGTCGTGGCATTCATGCGGAGTGGTGGGCGGGACGATGGGTTGGG
GGGGAATGCGTTTGA
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Coding sequence (CDS) from alignment at KK037259.1:117170..118084+

>rna10010 ID=rna10010|Name=rna10010|organism=Nannochloropsis gaditana|type=CDS|length=1056bp|location=Sequence derived from alignment at KK037259.1:117170..118084+ (Nannochloropsis gaditana)
ATGAACCCTCACACAACCTACATTatctgcccctttcccccaccccccct
cctccgttccGATCCTCAGGTCTACACGGCAGTGGTGGAGCTCTCCGCCC
GTTTGGTCGCCGAGCCCAAGGTCCTGACAGCCGTCAatgagctcctcctc
gcttcgtCACacaagGTGCTGGAGGACCCCCAGGTCGTGGATCACTCCAA
GACCTTtgtggcggaggtggtggccgatGACGCCTTGCAAAGGACAggtc
agagggagggagggagggagggaagtcaAGGCCTGGTGGCGGAGTGTCTC
CGCCCCCAGTCCCGACGACGCCTGACATGTCCatggcccccgccgccttt
cctcttcccttccttcccctcgtcttccctcctcagggGGCACGGCCATA
TGGAACTCGTTTCAATATTCCTTCCAGCCAAAACTGGCCCGGGTGCTTTG
GTTCGGTCTCCTATGCGGGGTCGTGGCATTCATGCGGAGTGGTGGGCGGG
ACGATGGGTTGGGGGGGAATGCGTTTGAATGAACCCTCACACAACCTACA
TTatctgcccctttcccccaccccccctcctccgttccGATCCTCAGGTC
TACACGGCAGTGGTGGAGCTCTCCGCCCGTTTGGTCGCCGAGCCCAAGGT
CCTGACAGCCGTCAatgagctcctcctcgcttcgtCACacaagGTGCTGG
AGGACCCCCAGGTCGTGGATCACTCCAAGACCTTtgtggcggaggtggtg
gccgatGACGCCTTGCAAAGGACAggtcagagggagggagggagggaggg
aagtcaAGGCCTGGTGGCGGAGTGTCTCCGCCCCCAGTCCCGACGACGCC
TGACATGTCCatggcccccgccgcctttcctcttcccttccttcccctcg
tcttccctcctcagggGGCACGGCCATATGGAACTCGTTTCAATATTCCT
TCCAGCCAAAACTGGCCCGGGTGCTTTGGTTCGGTCTCCTATGCGGGGTC
GTGGCATTCATGCGGAGTGGTGGGCGGGACGATGGGTTGGGGGGGAATGC
GTTTGA
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Synonyms
Publications