EWM20693.1, cds9977 (CDS) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	EWM20693.1
Unique Name	cds9977
Type	CDS
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Alignment location	KK037259.1:114590..114908 -
Alignment location	KK037259.1:114352..114425 -

Link to JBrowse

Properties


Property Name	Value
Protein id	EWM20693.1
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100674g5.10418.mrna
Gbkey	CDS

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
KK037259.1	supercontig	KK037259.1:114590..114908 -
KK037259.1	supercontig	KK037259.1:114352..114425 -

Analyses

This CDS is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST analysis for N. gaditana B-31	2020-04-07
InterPro analysis for N. gaditana B-31	2020-04-06
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

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BLAST of EWM20693.1 vs. NCBI_GenBank
Match: gi|585100516|gb|EWM20693.1| (hypothetical protein Naga_100674g5 [Nannochloropsis gaditana])

HSP 1 Score: 259.225 bits (661), Expect = 1.874e-87
Identity = 130/130 (100.00%), Postives = 130/130 (100.00%), Query Frame = 0

Query:    1 MLCASHASSVAVMSHSSLTHSRLPFDRIGFRFCHDRAPSYPLPSCCPLPSLFHTRIRTPTPRPGQACMERAPFKASASSCCRQRSTWRTKSSVQAGQACDGCRGRRAHRQGDPGASRTAHSSPSWGHRGG 130
            MLCASHASSVAVMSHSSLTHSRLPFDRIGFRFCHDRAPSYPLPSCCPLPSLFHTRIRTPTPRPGQACMERAPFKASASSCCRQRSTWRTKSSVQAGQACDGCRGRRAHRQGDPGASRTAHSSPSWGHRGG
Sbjct:    1 MLCASHASSVAVMSHSSLTHSRLPFDRIGFRFCHDRAPSYPLPSCCPLPSLFHTRIRTPTPRPGQACMERAPFKASASSCCRQRSTWRTKSSVQAGQACDGCRGRRAHRQGDPGASRTAHSSPSWGHRGG 130

The following BLAST results are available for this feature:

BLAST of EWM20693.1 vs. NCBI_GenBank

BLAST of EWM20693.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1


Match Name	E-value	Identity	Description
gi\|585100516\|gb\|EWM20693.1\|	1.874e-87	100.00	hypothetical protein Naga_100674g5 [Nannochloropsi...	[more]

Relationships

This CDS is a part of the following mRNA feature(s):


Feature Name	Unique Name	Species	Type
rna10008	rna10008	Nannochloropsis gaditana (N. gaditana B-31)	mRNA

Sequences

Synonyms

Publications