EWM20719.1, cds9954 (CDS) Nannochloropsis gaditana

Overview
NameEWM20719.1
Unique Namecds9954
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037259.1:55766..56184 -
Alignment locationKK037259.1:55494..55597 -
Alignment locationKK037259.1:55283..55385 -
Alignment locationKK037259.1:55133..55202 -
Alignment locationKK037259.1:54797..54897 -
Alignment locationKK037259.1:54464..54538 -
Alignment locationKK037259.1:54081..54199 -
Alignment locationKK037259.1:53626..53719 -
Alignment locationKK037259.1:53279..53396 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM20719.1
ProductCyclic nucleotide-binding domain protein
Orig transcript idgnl|cribi|Naga_100385g1.2321.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037259.1supercontigKK037259.1:55766..56184 -
KK037259.1supercontigKK037259.1:55494..55597 -
KK037259.1supercontigKK037259.1:55283..55385 -
KK037259.1supercontigKK037259.1:55133..55202 -
KK037259.1supercontigKK037259.1:54797..54897 -
KK037259.1supercontigKK037259.1:54464..54538 -
KK037259.1supercontigKK037259.1:54081..54199 -
KK037259.1supercontigKK037259.1:53626..53719 -
KK037259.1supercontigKK037259.1:53279..53396 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR018490cNMP-bd-like
IPR000595cNMP-bd_dom
IPR014710RmlC-like_jellyroll
Homology
[Close]
BLAST of EWM20719.1 vs. NCBI_GenBank
Match: gi|585100565|gb|EWM20719.1| (Cyclic nucleotide-binding domain protein [Nannochloropsis gaditana])

HSP 1 Score: 834.713 bits (2155), Expect = 0.000e+0
Identity = 400/400 (100.00%), Postives = 400/400 (100.00%), Query Frame = 0 
Query:    1 MTMNLAKFPCCFYISSGRASTTSMSSISEDVSICRNKKMIFAQQHRLRPRRQASGRFSTPCVHHDHTSFLVVMCLATLSLLTMNVDAFLLAHSTALQSPPSYFYSFSSAPRPTSFSSVARPTRGRGSVRGKNLVSSGWKSQHRQATRTSLDASTMVSPNRKTNHRMPLSPMPREDALEAWRTFVNDNLNDSGRDVRVSVQMADAMFDCGDIQAGEAGAYLIEEGPGEDGEPPDRASMKTSRGRELFFLLDGQVRIQVRGQKVARLGKGDFLGEASFVSNRRGPRSVTAICSGETGAHYLVWNQAKLQAFFEGRTEGGDEDGFLRRNLLHQDEKRRALRNALNEYWVQQLSKKLAHTMGTYERSWRPTDALEDDERQFEGNFGYRNQSAFGVSGPADALSK 400
            MTMNLAKFPCCFYISSGRASTTSMSSISEDVSICRNKKMIFAQQHRLRPRRQASGRFSTPCVHHDHTSFLVVMCLATLSLLTMNVDAFLLAHSTALQSPPSYFYSFSSAPRPTSFSSVARPTRGRGSVRGKNLVSSGWKSQHRQATRTSLDASTMVSPNRKTNHRMPLSPMPREDALEAWRTFVNDNLNDSGRDVRVSVQMADAMFDCGDIQAGEAGAYLIEEGPGEDGEPPDRASMKTSRGRELFFLLDGQVRIQVRGQKVARLGKGDFLGEASFVSNRRGPRSVTAICSGETGAHYLVWNQAKLQAFFEGRTEGGDEDGFLRRNLLHQDEKRRALRNALNEYWVQQLSKKLAHTMGTYERSWRPTDALEDDERQFEGNFGYRNQSAFGVSGPADALSK
Sbjct:    1 MTMNLAKFPCCFYISSGRASTTSMSSISEDVSICRNKKMIFAQQHRLRPRRQASGRFSTPCVHHDHTSFLVVMCLATLSLLTMNVDAFLLAHSTALQSPPSYFYSFSSAPRPTSFSSVARPTRGRGSVRGKNLVSSGWKSQHRQATRTSLDASTMVSPNRKTNHRMPLSPMPREDALEAWRTFVNDNLNDSGRDVRVSVQMADAMFDCGDIQAGEAGAYLIEEGPGEDGEPPDRASMKTSRGRELFFLLDGQVRIQVRGQKVARLGKGDFLGEASFVSNRRGPRSVTAICSGETGAHYLVWNQAKLQAFFEGRTEGGDEDGFLRRNLLHQDEKRRALRNALNEYWVQQLSKKLAHTMGTYERSWRPTDALEDDERQFEGNFGYRNQSAFGVSGPADALSK 400
[Close]
BLAST of EWM20719.1 vs. NCBI_GenBank
Match: gi|553194209|ref|XP_005855907.1| (hypothetical protein NGA_0556100, partial [Nannochloropsis gaditana CCMP526] >gi|422293151|gb|EKU20451.1| hypothetical protein NGA_0556100, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 144.436 bits (363), Expect = 2.313e-39
Identity = 68/68 (100.00%), Postives = 68/68 (100.00%), Query Frame = 0 
Query:  141 QHRQATRTSLDASTMVSPNRKTNHRMPLSPMPREDALEAWRTFVNDNLNDSGRDVRVSVQMADAMFDC 208
            QHRQATRTSLDASTMVSPNRKTNHRMPLSPMPREDALEAWRTFVNDNLNDSGRDVRVSVQMADAMFDC
Sbjct:    9 QHRQATRTSLDASTMVSPNRKTNHRMPLSPMPREDALEAWRTFVNDNLNDSGRDVRVSVQMADAMFDC 76
[Close]
BLAST of EWM20719.1 vs. NCBI_GenBank
Match: gi|298710389|emb|CBJ25453.1| (alternative oxidase, mitochondrial protein [Ectocarpus siliculosus])

HSP 1 Score: 68.9366 bits (167), Expect = 5.831e-9
Identity = 51/181 (28.18%), Postives = 81/181 (44.75%), Query Frame = 0 
Query:  204 AMFDCGDIQAGEAGAYLIEEGPGEDGEPPDRASMKTSRGRELFFLLDGQVRIQVRGQKVARLGKGDFLGEASFVSNRRGPRSVTAICSGETGAHYLVWNQAKLQAFFEGRTEGGDEDGFLRRNLLHQDEKRRALRNALNEYWVQQLSKKLAHTMGTYERSWRPTDALEDDERQFEGNFGYR 384
            A+   G++ + +    LI +G   D EP DR         +L+ L DG+ RI+V+G+ VA +  GDF+GEASF S R  PR+ T     +     + W    LQAF +                   + K    + AL   W++ L+ KL   M       +    L ++++   G++GYR
Sbjct:   36 ALLKVGEVISLKGSELLISQGDTYD-EPGDR---------QLYLLSDGECRIEVKGKPVASIAPGDFVGEASFTSGRVQPRTATVRAKSDE-IRVMAWTWRDLQAFMD-------------------NPKNLRTKAALQAIWMEGLAGKLNDVMSAL--GGQSVVELAEEDKTRAGDYGYR 184
The following BLAST results are available for this feature:
BLAST of EWM20719.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 3
Match NameE-valueIdentityDescription
gi|585100565|gb|EWM20719.1|0.000e+0100.00Cyclic nucleotide-binding domain protein [Nannochl... [more]
gi|553194209|ref|XP_005855907.1|2.313e-39100.00hypothetical protein NGA_0556100, partial [Nannoch... [more]
gi|298710389|emb|CBJ25453.1|5.831e-928.18alternative oxidase, mitochondrial protein [Ectoca... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9985rna9985Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications