EWM20741.1, cds9929 (CDS) Nannochloropsis gaditana

Overview
NameEWM20741.1
Unique Namecds9929
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037258.1:108518..108978 -
Alignment locationKK037258.1:108124..108406 -
Alignment locationKK037258.1:107775..107910 -
Alignment locationKK037258.1:107131..107216 -
Alignment locationKK037258.1:106298..107013 -
Alignment locationKK037258.1:106099..106228 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM20741.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100249g4.5587.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037258.1supercontigKK037258.1:108518..108978 -
KK037258.1supercontigKK037258.1:108124..108406 -
KK037258.1supercontigKK037258.1:107775..107910 -
KK037258.1supercontigKK037258.1:107131..107216 -
KK037258.1supercontigKK037258.1:106298..107013 -
KK037258.1supercontigKK037258.1:106099..106228 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM20741.1 vs. NCBI_GenBank
Match: gi|585100603|gb|EWM20741.1| (hypothetical protein Naga_100249g4 [Nannochloropsis gaditana])

HSP 1 Score: 1239.56 bits (3206), Expect = 0.000e+0
Identity = 603/603 (100.00%), Postives = 603/603 (100.00%), Query Frame = 0
Query:    1 MRRDDDDAVADQDKSDESYQETGHETEAFVETLMTMSSSYESESESISPSPMQSNVSSTSHMRMQAPHYRERSSRHPTPSLSLAEHETAEGEMKSRGYKKENRRLEKQEDRDNTTEVGPAMDREGHDQFHCSGACDIGLCECYQKAPPDALEKEASTSENPAGFNVLPRLSFTGRSSFVPLLSSPSLDQIMELIDIRAMVPLYLQAFRELLQKGMLNRKRGIILLKYWREVKIQFGGNCDPTHGLFAEVQGAFWIADKELGSPSSILDGAVSDAERRRLWMSHANRLGGEGAKIPDDRPSFFRELVQGALGNPGTRQTGLFKALDRHAQVNLFLFENRVVELSPGEFVSLIMFEPAPPSRHIPPQHPVARTRPLQEPICSTPSLPSRASLFPSRTTSDPPFEEQERERRHAGGRGGASRPTEQEEGLVAGTGAAGQDEERAEEEGNQANESLYAAVSLTSPVSSPSSLPSAPSVLSSEPSSSSDTALHPHFSLHAAAPITTIPLPLPQPPHHFVQETSSAQSLFEPNLRPLASPSEIPPLQWSPMQRDRPKKEAAKDEELGGKPAETSVAAKILAKKRMMTHKATYICHMSRTSVDDMHVQNK 603
            MRRDDDDAVADQDKSDESYQETGHETEAFVETLMTMSSSYESESESISPSPMQSNVSSTSHMRMQAPHYRERSSRHPTPSLSLAEHETAEGEMKSRGYKKENRRLEKQEDRDNTTEVGPAMDREGHDQFHCSGACDIGLCECYQKAPPDALEKEASTSENPAGFNVLPRLSFTGRSSFVPLLSSPSLDQIMELIDIRAMVPLYLQAFRELLQKGMLNRKRGIILLKYWREVKIQFGGNCDPTHGLFAEVQGAFWIADKELGSPSSILDGAVSDAERRRLWMSHANRLGGEGAKIPDDRPSFFRELVQGALGNPGTRQTGLFKALDRHAQVNLFLFENRVVELSPGEFVSLIMFEPAPPSRHIPPQHPVARTRPLQEPICSTPSLPSRASLFPSRTTSDPPFEEQERERRHAGGRGGASRPTEQEEGLVAGTGAAGQDEERAEEEGNQANESLYAAVSLTSPVSSPSSLPSAPSVLSSEPSSSSDTALHPHFSLHAAAPITTIPLPLPQPPHHFVQETSSAQSLFEPNLRPLASPSEIPPLQWSPMQRDRPKKEAAKDEELGGKPAETSVAAKILAKKRMMTHKATYICHMSRTSVDDMHVQNK
Sbjct:    1 MRRDDDDAVADQDKSDESYQETGHETEAFVETLMTMSSSYESESESISPSPMQSNVSSTSHMRMQAPHYRERSSRHPTPSLSLAEHETAEGEMKSRGYKKENRRLEKQEDRDNTTEVGPAMDREGHDQFHCSGACDIGLCECYQKAPPDALEKEASTSENPAGFNVLPRLSFTGRSSFVPLLSSPSLDQIMELIDIRAMVPLYLQAFRELLQKGMLNRKRGIILLKYWREVKIQFGGNCDPTHGLFAEVQGAFWIADKELGSPSSILDGAVSDAERRRLWMSHANRLGGEGAKIPDDRPSFFRELVQGALGNPGTRQTGLFKALDRHAQVNLFLFENRVVELSPGEFVSLIMFEPAPPSRHIPPQHPVARTRPLQEPICSTPSLPSRASLFPSRTTSDPPFEEQERERRHAGGRGGASRPTEQEEGLVAGTGAAGQDEERAEEEGNQANESLYAAVSLTSPVSSPSSLPSAPSVLSSEPSSSSDTALHPHFSLHAAAPITTIPLPLPQPPHHFVQETSSAQSLFEPNLRPLASPSEIPPLQWSPMQRDRPKKEAAKDEELGGKPAETSVAAKILAKKRMMTHKATYICHMSRTSVDDMHVQNK 603          
BLAST of EWM20741.1 vs. NCBI_GenBank
Match: gi|553193038|ref|XP_005855698.1| (hypothetical protein NGA_0645100 [Nannochloropsis gaditana CCMP526] >gi|422293365|gb|EKU20665.1| hypothetical protein NGA_0645100 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 949.118 bits (2452), Expect = 0.000e+0
Identity = 484/562 (86.12%), Postives = 488/562 (86.83%), Query Frame = 0
Query:   62 MRMQAPHYRERSSRHPTPSLSLAEHETAEGEMKSRGYKKENRRLEKQEDRDNTTEVGPAMDREGHDQFHCSGACDIGLCECYQKAPPDALEKEASTSENPAGFNVLPRLSFTGRSSFVPLLSSPSLDQIMELIDIRAMVPLYLQAFRELLQKGMLNRKRGIILLKYWREVKIQFGGNCDPTHGLFAEVQGAFWIADKELGSPSSILD----------------------GAVSDAERRRLW-MSHANRLGGEGAK---------------------------------------IPDDRPSFFRELVQGALGNPGTRQTGLFKALDRHAQVNLFLFENRVVELSPGEFVSLIMFEPAPPSRHIPPQHPVARTRPLQEPICSTPSLPSRASLFPSRTTSDPPFEEQERERRHAGGRGGASRPTEQEEGLVAGTGAAGQDEERAEEEGNQANESLYAAVSLTSPVSSPSSLPSAPSVLSSEPSSSSDTALHPHFSLHAAAPITTIPLPLPQPPHHFVQETSSAQSLFEPNLRPLASPSEIPPLQWSPMQRDRPKKEAAKDEELG 561
            MRMQAPHYRERSSRHPTPSLSLAEHETAEGEMKSRGYKKENRRLEKQEDRDNTTEVGPAMDREGHDQFHCSGACDIGLCECYQKAPPDALEKEASTSENPAGFNVLPRLSFTGRSSFVPLLSSPSLDQIMELIDIRAMVPLYLQAFRELLQKGMLNRKRGIILLKYWREVKIQFGGNCDPTHGLFAEVQGAFWIADKELGSPSSILD                      GA SDA  ++L   S A R+   G K                                       +PDDRPSFFRELVQGALGNPGTRQTGLFKALDRHAQVNLFLFENRVVELSPGEFVSLIMFEPAPPSRHIPPQHPVARTRPLQEPICSTPSLPSRASLFPSRTTSDPPFEEQERERRHAGGRGGASRPTEQEEGLVAGTGAAGQDEERAEEEGNQANESLYAAVSLTSPVSSPSSLPSAPSVLSSEPSSSSDTALHPHFSLHAAAPITTIPLPLPQPPHHF QETSSAQSLFEPNLRPLASPSEIPPLQWSPMQRDRPKKEAAKDEELG
Sbjct:    1 MRMQAPHYRERSSRHPTPSLSLAEHETAEGEMKSRGYKKENRRLEKQEDRDNTTEVGPAMDREGHDQFHCSGACDIGLCECYQKAPPDALEKEASTSENPAGFNVLPRLSFTGRSSFVPLLSSPSLDQIMELIDIRAMVPLYLQAFRELLQKGMLNRKRGIILLKYWREVKIQFGGNCDPTHGLFAEVQGAFWIADKELGSPSSILDGAVSDAERRRLWMSHANRLGGEGAKSDAIFKQLNDGSRAIRMECLGGKERRLVVNDVYLTYFRRPEEFMKDAWARRCLIGFLLAATVVPDDRPSFFRELVQGALGNPGTRQTGLFKALDRHAQVNLFLFENRVVELSPGEFVSLIMFEPAPPSRHIPPQHPVARTRPLQEPICSTPSLPSRASLFPSRTTSDPPFEEQERERRHAGGRGGASRPTEQEEGLVAGTGAAGQDEERAEEEGNQANESLYAAVSLTSPVSSPSSLPSAPSVLSSEPSSSSDTALHPHFSLHAAAPITTIPLPLPQPPHHFAQETSSAQSLFEPNLRPLASPSEIPPLQWSPMQRDRPKKEAAKDEELG 562          
BLAST of EWM20741.1 vs. NCBI_GenBank
Match: gi|585100606|gb|EWM20744.1| (Zn(2)-C6 fungal-type DNA-binding domain protein [Nannochloropsis gaditana])

HSP 1 Score: 116.316 bits (290), Expect = 1.056e-23
Identity = 57/109 (52.29%), Postives = 74/109 (67.89%), Query Frame = 0
Query:  185 PSLDQIMELIDIRAMVPLYLQAFRELLQKGMLNRKRGIILLKYWREVKIQFGGNCDPTHGLFAEVQGAFWIADKELGSPSSILDGAVSDAERRRLWMSHANRLGGEGAK 293
            P LD ++E  D+ AMVPLYLQAF++L Q+G+LNRKR I LLK W ++ +   G+CDPT G FAEV+ AF I D EL  P  +       AE+ RLW + A+R+ GEGAK
Sbjct:  171 PYLDLVIERSDLPAMVPLYLQAFQDLFQEGVLNRKRAIGLLKSWVDLGVMMDGDCDPTFGAFAEVKAAFQINDLELEDPECLAYEPPLHAEKGRLWAARADRVLGEGAK 279          

HSP 2 Score: 67.3958 bits (163), Expect = 3.936e-8
Identity = 35/97 (36.08%), Postives = 56/97 (57.73%), Query Frame = 0
Query:  295 PDDRPSFFRELVQGALGNPGTRQTGLFKALDRHAQVNLFLFENRVVELSPGEFVSLIMFEPAPPSRHIPPQHPVARTRPLQEPICSTPSLPSRASLF 391
            P+DR ++F+ L    L     ++T   K  DR  ++ L+L +++VV++ P E+ SL + EPAPPSRH+  +  V R R    P C++ S    AS+F
Sbjct:  346 PEDRLAYFKLLHFATLSTSLMKRTAFLKIFDRQGRMTLYLSDHQVVKMGPNEYASLCVTEPAPPSRHVTTRPDVTRLRSTHHP-CNSSS----ASMF 437          
The following BLAST results are available for this feature:
BLAST of EWM20741.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 3
Match NameE-valueIdentityDescription
gi|585100603|gb|EWM20741.1|0.000e+0100.00hypothetical protein Naga_100249g4 [Nannochloropsi... [more]
gi|553193038|ref|XP_005855698.1|0.000e+086.12hypothetical protein NGA_0645100 [Nannochloropsis ... [more]
gi|585100606|gb|EWM20744.1|1.056e-2352.29Zn(2)-C6 fungal-type DNA-binding domain protein [N... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9960rna9960Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications