EWM20764.1, cds9908 (CDS) Nannochloropsis gaditana

Overview
NameEWM20764.1
Unique Namecds9908
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationKK037258.1:39593..39721 -
Alignment locationKK037258.1:39104..39185 -
Alignment locationKK037258.1:38693..38781 -
Alignment locationKK037258.1:38353..38454 -
Alignment locationKK037258.1:37995..38180 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM20764.1
Productcellulase 2
Orig transcript idgnl|cribi|Naga_100907g1.10527.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
KK037258.1supercontigKK037258.1:39593..39721 -
KK037258.1supercontigKK037258.1:39104..39185 -
KK037258.1supercontigKK037258.1:38693..38781 -
KK037258.1supercontigKK037258.1:38353..38454 -
KK037258.1supercontigKK037258.1:37995..38180 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0004553hydrolase activity, hydrolyzing O-glycosyl compounds
Vocabulary: Biological Process
TermDefinition
GO:0005975carbohydrate metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR017853Glycoside_hydrolase_SF
IPR001547Glyco_hydro_5
IPR013781Glyco_hydro_catalytic_dom
Homology
BLAST of EWM20764.1 vs. NCBI_GenBank
Match: gi|585100640|gb|EWM20764.1| (cellulase 2 [Nannochloropsis gaditana])

HSP 1 Score: 401.364 bits (1030), Expect = 1.301e-141
Identity = 195/195 (100.00%), Postives = 195/195 (100.00%), Query Frame = 0
Query:    1 MQSLRIASVAGLLLSMACAPVSAEVPGGALRGGNSTTRSLAPQCLYKDTLEWTSSPNGAVLLNGNAFHIKGISWFGIEKGEEMLHGLNKRPMGDILDFVKTKFNVIRVPFSVKFALSDPLTKRPDRYIVGFGLEDKTSFEILDIFVAECGKRGIFIMLDQHDIVGEKAELWYEVRRAGEGRGKTFSIEGNRDNLG 195
            MQSLRIASVAGLLLSMACAPVSAEVPGGALRGGNSTTRSLAPQCLYKDTLEWTSSPNGAVLLNGNAFHIKGISWFGIEKGEEMLHGLNKRPMGDILDFVKTKFNVIRVPFSVKFALSDPLTKRPDRYIVGFGLEDKTSFEILDIFVAECGKRGIFIMLDQHDIVGEKAELWYEVRRAGEGRGKTFSIEGNRDNLG
Sbjct:    1 MQSLRIASVAGLLLSMACAPVSAEVPGGALRGGNSTTRSLAPQCLYKDTLEWTSSPNGAVLLNGNAFHIKGISWFGIEKGEEMLHGLNKRPMGDILDFVKTKFNVIRVPFSVKFALSDPLTKRPDRYIVGFGLEDKTSFEILDIFVAECGKRGIFIMLDQHDIVGEKAELWYEVRRAGEGRGKTFSIEGNRDNLG 195          
BLAST of EWM20764.1 vs. NCBI_GenBank
Match: gi|585108749|gb|EWM26661.1| (cellulase 2 [Nannochloropsis gaditana])

HSP 1 Score: 93.5893 bits (231), Expect = 6.531e-19
Identity = 52/132 (39.39%), Postives = 77/132 (58.33%), Query Frame = 0
Query:   44 CLYKDTLEWTSSPNGAVLLNGNAFHIKGISWFGIEKGEEMLHGLNKRPMGDILD-FVKTKFNVIRVPFSVKFALSDPLTKRPDRYIVGFGLEDKTSFEILDIFVAECGKRGIFIMLDQHDIVGEKA-ELWYE 173
            C     L W+S  +G +  N   F +KGISWFG E       GLN   +  IL+ F++ KFN +R+P SV F L+ P   +P++  VG GL+ KT +EILD  + +   RG+ +MLD H +  ++A +LWY+
Sbjct:   69 CFDSFDLAWSSGKDGQIYANTAPFFVKGISWFGCEGHGYTFTGLNFTTVDTILNFFLQHKFNTVRIPVSVAFGLA-PKDFKPNQRFVGKGLKGKTIWEILDEVIDQAALRGLMVMLDMHTLGPQEATDLWYD 199          
BLAST of EWM20764.1 vs. NCBI_GenBank
Match: gi|585100881|gb|EWM20925.1| (cellulase 2 [Nannochloropsis gaditana])

HSP 1 Score: 88.9669 bits (219), Expect = 2.726e-17
Identity = 55/134 (41.04%), Postives = 75/134 (55.97%), Query Frame = 0
Query:   47 KDTLEWTSSPNGAVLLNGNAFHIKGISWFGIEKGEEMLHGLN---KRPMGDILDFVKTK-FNVIRVPFSVKFALS-DPLTKRPDRYIVGFGLEDKTSFEILDIFVAECGKRGIFIMLDQHDIVGEK--AELWYE 173
            K  L WTS     VL+N   F IKGI+WFG E  ++ +HGL     + + D LD +    FN IR+PFSVK AL+ D     P        L   TS +I+D  V E GKRG+ +MLDQH +  ++  ++LWY+
Sbjct:   13 KGPLTWTSE-RRMVLVNNRQFRIKGINWFGFETPDKCVHGLWGGLSKTLTDYLDLLAFHGFNAIRLPFSVKLALALDTTYPEPGFVQADASLSSLTSGQIMDKLVEEAGKRGMMVMLDQHRLDPDRGISDLWYD 145          
BLAST of EWM20764.1 vs. NCBI_GenBank
Match: gi|802747061|gb|KKA75130.1| (hypothetical protein PRIPAC_4513 [Pristionchus pacificus])

HSP 1 Score: 85.5001 bits (210), Expect = 3.004e-17
Identity = 49/138 (35.51%), Postives = 78/138 (56.52%), Query Frame = 0
Query:   39 SLAPQCLYKDTLEWTSSPNGAVLLNGNAFHIKGISWFGIEKGEEMLHGLNKRPMGDILDFVK-TKFNVIRVPFSVKFALSDPLTKRPDRYIVGFGLEDKTSFEILDIFVAECGKRGIFIMLDQHDIV--GEKAELWYE 173
            +++ QC+  + L+WT++  G +L+NG    +KGI++FG E      HG+    +   LDF+K   FN IRVPFS++   ++P +          GL  K++ ++LD+F+    +RG  IMLD H I   G  +ELWY 
Sbjct:   16 TMSQQCV--NQLQWTTA-GGNILVNGQPLVLKGINYFGFETETYTPHGIWSYDLNVYLDFIKNNNFNAIRVPFSLEMVKNNP-SNLNINCATNPGLCGKSALQLLDVFIDRAAERGFLIMLDNHRITPGGGISELWYN 149          
BLAST of EWM20764.1 vs. NCBI_GenBank
Match: gi|66826505|ref|XP_646607.1| (hypothetical protein DDB_G0270190 [Dictyostelium discoideum AX4] >gi|60474508|gb|EAL72445.1| hypothetical protein DDB_G0270190 [Dictyostelium discoideum AX4])

HSP 1 Score: 87.8113 bits (216), Expect = 8.015e-17
Identity = 53/138 (38.41%), Postives = 74/138 (53.62%), Query Frame = 0
Query:   43 QCLYKDTLEWTSSPNGAVLLNGNAFHIKGISWFGIEKGEEMLHGLNKRPMGDILD-FVKTKFNVIRVPFSVKFALSDPLTKRPDR--YIVGFGLEDKTSFEILDIFVAECGKRGIFIMLDQH--DIVGEKAELWYEVR 175
            QC  KD L W S  +  + LNG    I+GI+WFG+E G     GL  + +  ILD  V T FN +R+PFSV   ++    + P+   Y +   L+ KT+ E+L    +E GKRGI I+L+QH  D     + LWY   
Sbjct:   26 QCWNKDNLSWRSGGDRKLTLNGVEITIQGIAWFGMETGTFSPGGLQSQSVESILDILVATGFNALRLPFSVDMLINK---RYPNHINYSLNPNLQGKTALEVLQYITSESGKRGILIVLEQHRFDPADYISPLWYTTE 160          
BLAST of EWM20764.1 vs. NCBI_GenBank
Match: gi|585109023|gb|EWM26893.1| (cellulase 2 [Nannochloropsis gaditana])

HSP 1 Score: 83.9593 bits (206), Expect = 1.335e-15
Identity = 65/192 (33.85%), Postives = 90/192 (46.88%), Query Frame = 0
Query:    4 LRIASVAGLLLSMACAPVSAEVPGGALRGGNSTT---RSLA----------PQCLYKDTLEWTSSPNGAVLLNGNAFHIKGISWFGIEKGE-EMLHGLNKRPMGDILDF-VKTKFNVIRVPFSVKFALSDPLTKRPDRYIVGFGLEDKTSFEILDIFVAECGKRGIFIMLDQHDIVGEK-AELWYEVRRAGE 179
            +R+A+   L L    +P  +          NS T   R LA          P  L K+ L WT + N  + +NG  FH+KG+SWFG+E G+  ML GLN R + +IL F V   FN IRVPFS K+AL      R   Y     +   +  + L+ F+       I +MLD H +  ++  ELWY      E
Sbjct:    8 MRLATQGVLALLPTSSPEGSITDASLASATNSVTPLLRGLAYPSFTKAMHGPIDLGKEELTWTGT-NKELRVNGKTFHLKGLSWFGLEVGDSNMLLGLNNRGLDEILQFLVDNNFNAIRVPFSTKWALDYDTGVR--GYFRDGDINQLSRRQFLNKFIERAADFKILVMLDSHRLNDQEIPELWYSQEYTQE 196          
BLAST of EWM20764.1 vs. NCBI_GenBank
Match: gi|585108543|gb|EWM26490.1| (cellulase 2 [Nannochloropsis gaditana])

HSP 1 Score: 83.9593 bits (206), Expect = 1.505e-15
Identity = 67/213 (31.46%), Postives = 102/213 (47.89%), Query Frame = 0
Query:    1 MQSLRIASVAGLLLSMACAPVSAEVPGGALRGGNS---TTRSLA----------PQCLYKDTLEWTSSPNGAVLLNGNAFHIKGISWFGIEKGEEMLHGLNKRPMGDILDFVKTK-FNVIRVPFSVKFALSDPLTKRPDRYIVGFGLEDKTSFEILDIFVAECGKRGIFIMLDQHDIVGE-KAELWYEVRRA----GEGRGKTFSIEGNRDNL 194
            M ++    V  LLL+ + +  +A+   G L   N     TR LA          P  L   +L+WTS   G +LLNG  FH+KG+S+FG E   E+ HGL       I  F++ + FN +R+PFS   AL     K+ +   +   L D T+ E++   + +  + GI IMLD H +  +   ELWY+ + +     E      +  G+R NL
Sbjct:    7 MDAISSVIVTFLLLTASPSFSNADDTMGGLVNMNPRLRATRQLAKASGSSKVSTPADLCVASLDWTSE-GGEILLNGQPFHLKGVSYFGFETPNEVPHGLWSVTRDQIFGFLRNESFNAVRLPFSTALALEP--NKKVNANTIEKELHDLTALELIGNIIDKAAEYGILIMLDMHRLNEDFIPELWYDDKYSMDDVKEAWDNLLTAFGDRWNL 216          
BLAST of EWM20764.1 vs. NCBI_GenBank
Match: gi|470501173|ref|XP_004347125.1| (cellulase (glycosyl hydrolase family 5) subfamily protein [Acanthamoeba castellanii str. Neff] >gi|440800708|gb|ELR21743.1| cellulase (glycosyl hydrolase family 5) subfamily protein [Acanthamoeba castellanii str. Neff])

HSP 1 Score: 83.5741 bits (205), Expect = 2.769e-15
Identity = 53/152 (34.87%), Postives = 77/152 (50.66%), Query Frame = 0
Query:   29 ALRGGNSTTRSLAPQCLYKDTLEWTSSPNGAVLLNGNAFHIKGISWFGIEKGEEMLHGL-NKRPMGDILDFVKT-KFNVIRVPFSVKFALSDPLTKRPD--RYIVGFGLEDKTSFEILDIFVAECGKRGIFIMLDQHDIVGE---KAELWYE 173
            AL    ST +S    C     L +TS+  GA+ LNG  F +KG SWFG E G +++HGL   R   ++LDF+ T  FN IR+PF +   L+D    +P    Y     L+  +S +++D  V     RG+ IM D H  + +   +   WY 
Sbjct:   26 ALMSQTSTAQSAT--CYAPSALNFTSA-QGALWLNGQPFKLKGTSWFGFETGNKVVHGLWTSRSYLNLLDFLATNNFNAIRIPFYLDLVLND---AQPSSINYGANPDLQGLSSMQVMDKVVQAAAARGLLIMFDLHSFLPDTNIQDNTWYN 171          
BLAST of EWM20764.1 vs. NCBI_GenBank
Match: gi|470261800|ref|XP_004360506.1| (putative cellulase [Dictyostelium fasciculatum] >gi|328874289|gb|EGG22655.1| putative cellulase [Dictyostelium fasciculatum])

HSP 1 Score: 83.5741 bits (205), Expect = 2.964e-15
Identity = 48/140 (34.29%), Postives = 76/140 (54.29%), Query Frame = 0
Query:   36 TTRSLAPQCLYKDTLEWTSSPNGAVLLNGNAFHIKGISWFGIEKGEEMLHGLNKRPMGDILD-FVKTKFNVIRVPFSVKFALSDPLTKRPDRYIVGFGLEDKTSFEILDIFVAECGKRGIFIMLDQH--DIVGEKAELWY 172
            +T +LA  C   D+L+W +S    ++LNG    ++GI+WFG+E       GL +  +  +LD  V   FN +R+PFS+   L+D    + + Y +  GL+ KT+ ++LD  VA    RGI  + +QH  D      +LWY
Sbjct:   18 STIALADTCFNIDSLQWRTS-GSKMMLNGVEIRVQGIAWFGLETDSFSPGGLQQTSVEALLDILVNQNFNALRLPFSIDMILNDRWPSKIN-YGLNPGLQGKTALQVLDYIVAASAARGILAIPEQHRFDASAYIPDLWY 155          
BLAST of EWM20764.1 vs. NCBI_GenBank
Match: gi|470422180|ref|XP_004337474.1| (cellulase (glycosyl hydrolase family 5) subfamily protein [Acanthamoeba castellanii str. Neff] >gi|440794295|gb|ELR15461.1| cellulase (glycosyl hydrolase family 5) subfamily protein [Acanthamoeba castellanii str. Neff])

HSP 1 Score: 79.7221 bits (195), Expect = 4.615e-14
Identity = 48/137 (35.04%), Postives = 63/137 (45.99%), Query Frame = 0
Query:   41 APQCLYKDTLEWTSSPNGAVLLNGNAFHIKGISWFGIEKGEEMLHGLNKRPMGDILDFVKTK-FNVIRVPFSVKFALSDPLTKRPDRYIVGFGLEDKTSFEILDIFVAECGKRGIFIMLDQHDIVGEKAE---LWYE 173
            A  C     L +TS   G + +NGN   IKG SWFG E      HGL  +     LDF+    FN IR+PF +  A++D      D Y     L+  TS +++D  +     RGI IMLD H    +      LWY 
Sbjct:   22 ADACFATTALNFTSE-QGGLWVNGNRLRIKGASWFGFETSINAPHGLWSKSYTFFLDFLADNGFNAIRLPFHLALAINDATPGSID-YSANSDLQGLTSLQVMDKIIQAAADRGILIMLDLHSFTADSYASDGLWYN 156          
The following BLAST results are available for this feature:
BLAST of EWM20764.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Position :
0
Zoom :
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01SequenceEWM20764.1EWM26661.1EWM20925.1KKA75130.1XP_646607.1EWM26893.1EWM26490.1XP_004347125.1XP_004360506.1XP_004337474.1
Match NameE-valueIdentityDescription
gi|585100640|gb|EWM20764.1|1.301e-141100.00cellulase 2 [Nannochloropsis gaditana][more]
gi|585108749|gb|EWM26661.1|6.531e-1939.39cellulase 2 [Nannochloropsis gaditana][more]
gi|585100881|gb|EWM20925.1|2.726e-1741.04cellulase 2 [Nannochloropsis gaditana][more]
gi|802747061|gb|KKA75130.1|3.004e-1735.51hypothetical protein PRIPAC_4513 [Pristionchus pac... [more]
gi|66826505|ref|XP_646607.1|8.015e-1738.41hypothetical protein DDB_G0270190 [Dictyostelium d... [more]
gi|585109023|gb|EWM26893.1|1.335e-1533.85cellulase 2 [Nannochloropsis gaditana][more]
gi|585108543|gb|EWM26490.1|1.505e-1531.46cellulase 2 [Nannochloropsis gaditana][more]
gi|470501173|ref|XP_004347125.1|2.769e-1534.87cellulase (glycosyl hydrolase family 5) subfamily ... [more]
gi|470261800|ref|XP_004360506.1|2.964e-1534.29putative cellulase [Dictyostelium fasciculatum] >g... [more]
gi|470422180|ref|XP_004337474.1|4.615e-1435.04cellulase (glycosyl hydrolase family 5) subfamily ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna9939rna9939Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications